mRNA_H-elongata_contig95648.16969.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95648.16969.1
Unique NamemRNA_H-elongata_contig95648.16969.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: A0A6H5JIB4_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIB4_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 4.650e-65
Identity = 108/134 (80.60%), Postives = 123/134 (91.79%), Query Frame = 1
Query:    4 AKYINHALPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLTGKGTEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEALRLLDGIL 405
            AKY+   LP+IK SL+DS+AGVRRNAAFCAGT+AQGGG+ IVPYY E+LQALHPLF+LT KGTEGGVVDNAAAAVARMIM +P ++PMDQVLPVF+SALPLK+DRSENE VYTCLLGLIH+RHPEALRLLD I+
Sbjct:  901 AKYVGQVLPIIKLSLVDSSAGVRRNAAFCAGTLAQGGGEVIVPYYPELLQALHPLFALTSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENETVYTCLLGLIHLRHPEALRLLDPIM 1034          
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: A0A835ZQ81_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ81_9STRA)

HSP 1 Score: 152 bits (383), Expect = 5.890e-40
Identity = 71/134 (52.99%), Postives = 99/134 (73.88%), Query Frame = 1
Query:    7 KYINHALPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLTGKG-TEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEALRLLDGIL 405
            +Y+   +P +++ L DS++ V RN  FCAG +A+G G++I P+ LE+LQ L P+F   GKG TEGG++DNAAAAVAR++M +P ++PM+QVLP  +SALPLK D  ENE VY C++GL+ MRHP AL  L  I+
Sbjct: 1349 RYVPSVMPAVRKGLKDSDSRVVRNTCFCAGVLAEGAGESITPHVLELLQLLAPIFQKAGKGSTEGGLLDNAAAAVARIVMAAPGAVPMEQVLPALLSALPLKVDAQENETVYGCVIGLLKMRHPAALASLPAIM 1482          
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: A0A7S2D6V2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6V2_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.720e-38
Identity = 70/128 (54.69%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 SAKYINHALPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLTGKGTEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEAL 384
            +A +I   LP++   L D++AGVRRNAAFC G MA    + + P+YL +LQ LHPLF +        V+DNAAAAVARM+  S  S+P  QVLPVF+  LPLK D +ENEAVY CL GLI MRHP+A+
Sbjct:    4 AAPFIPALLPVVITGLQDNSAGVRRNAAFCCGVMALASPETVAPHYLTLLQHLHPLFQMDPT-LHAAVIDNAAAAVARMMTASLASMPTAQVLPVFLGCLPLKDDMNENEAVYACLAGLIEMRHPDAM 130          
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: A0A1D6JWX3_MAIZE (ARM repeat superfamily protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6JWX3_MAIZE)

HSP 1 Score: 128 bits (322), Expect = 4.020e-33
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   10 YINHALPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLTGKGTEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEALRLLDGILGEWA 417
            Y++  +PL+ + L  S+A  RRNAAFCAG + + GG A + YY +IL++LH LFS     ++  V DNAA A+ARMIM  PQSIP++QVLPVF+ ALPLK D  E+  VY C+ GL+   HP+ L L+  ++  +A
Sbjct:  180 YVDKIMPLVLKELASSDATNRRNAAFCAGEICKNGGAAALKYYGDILRSLHNLFS--NSESDDAVRDNAAGAIARMIMVQPQSIPLNQVLPVFIKALPLKEDHEESMTVYGCVCGLLLSSHPQILPLVPDVIHVFA 313          
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: A0A067CRP9_SAPPC (Importin N-terminal domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRP9_SAPPC)

HSP 1 Score: 132 bits (332), Expect = 4.220e-33
Identity = 66/136 (48.53%), Postives = 93/136 (68.38%), Query Frame = 1
Query:   10 YINHALPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLTGKGTEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEALRLLDGILGEWA 417
            Y+   LPL+ ++    N  V+RNAAF  G + +  G ++ P YL++LQALHPLF+      E GVVDNAA+AVA+MIMT P S+P+D V+PVF+ ALPLKAD +E E+V+TCLLGL+  ++P  L  +  +   +A
Sbjct:  892 YVPTVLPLMLKACAGENTSVQRNAAFALGMLVKMSGASLAPQYLQVLQALHPLFA----SEEEGVVDNAASAVAKMIMTHPDSVPLDAVMPVFLKALPLKADFTETESVFTCLLGLLQAQNPVVLNAMPQVAAIFA 1023          
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: A0A453IGA0_AEGTS (Uncharacterized protein n=6 Tax=Poaceae TaxID=4479 RepID=A0A453IGA0_AEGTS)

HSP 1 Score: 123 bits (309), Expect = 1.330e-32
Identity = 65/136 (47.79%), Postives = 88/136 (64.71%), Query Frame = 1
Query:   10 YINHALPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLTGKGTEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEALRLLDGILGEWA 417
            Y++  +PL  + L  S A  RRNAAFC G + +  G A + YY +ILQ LH LF+ + +     V DNAA A+ARMIM  PQSIP++QVLPVF+ ALPLK D  E+ AVY+CL  L+   HP+ L L+  ++  +A
Sbjct:   32 YVDKIMPLALKELASSEATNRRNAAFCVGELCKNSGAAALKYYPDILQGLHRLFANSEQDL--AVRDNAAGAIARMIMVQPQSIPLNQVLPVFIKALPLKEDHEESMAVYSCLCNLLLSSHPQILTLVPDVIHVFA 165          
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: Q10NR4_ORYSJ (HEAT repeat family protein, expressed n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10NR4_ORYSJ)

HSP 1 Score: 125 bits (313), Expect = 1.930e-32
Identity = 64/136 (47.06%), Postives = 87/136 (63.97%), Query Frame = 1
Query:   10 YINHALPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLTGKGTEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEALRLLDGILGEWA 417
            Y++  +PL+ + L  S A  RRNAAFC G M + GG A + YY +IL  LH LF+      +  V DNAA A+ARMIM  PQSIP++QVLPVF+ ALPLK D  E+  VY+C+  L+   HP+ L L+  ++  +A
Sbjct:  140 YVDKIMPLVLKELASSEATNRRNAAFCVGEMCKNGGAAALKYYGDILHGLHRLFA--DSEPDDAVRDNAAGAIARMIMVQPQSIPLNQVLPVFIKALPLKEDHEESMVVYSCVCNLLLSSHPQILPLVPDVINAFA 273          
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: A0A7R9Z5S6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z5S6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.210e-32
Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   25 LPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLT-GKG-TEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEAL 384
            LP +   L D +  V+RN+AFCAG   +G G+ + P Y +ILQA+ PLF +   +G      VDNAAAAV+RMIM SP ++PM QVLP  + ALPLK D +EN+ VY CLLGL+ M  P+A+
Sbjct:   55 LPAVIAGLADPDDNVKRNSAFCAGVCCEGLGETVAPQYGQILQAISPLFGIDPAQGDASAAAVDNAAAAVSRMIMASPGNVPMSQVLPALLKALPLKNDMTENDTVYKCLLGLLQMNQPDAV 176          
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: A0A7S2VZD1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZD1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.510e-32
Identity = 64/121 (52.89%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   28 PLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLTGKGTEGGV--VDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEAL 384
            P I   L DS+  V+RNAAFC G   +G GD IV  Y +ILQA+ PLF+L    ++     +DNAAAA++RMIM SP ++PM QVLPV + ALPLK D +ENE VY CLLGL+ M   +A+
Sbjct:  159 PAIMAGLADSDDNVKRNAAFCTGVSCEGLGDLIVTVYPQILQAISPLFALDQNTSDSSAAAIDNAAAAISRMIMASPANVPMGQVLPVLLRALPLKNDMTENETVYQCLLGLLQMNQEDAV 279          
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Match: A0A1R3GRI7_COCAP (Armadillo-like helical n=3 Tax=Malvaceae TaxID=3629 RepID=A0A1R3GRI7_COCAP)

HSP 1 Score: 125 bits (314), Expect = 7.990e-32
Identity = 66/138 (47.83%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    4 AKYINHALPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEILQALHPLFSLTGKGTEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSALPLKADRSENEAVYTCLLGLIHMRHPEALRLLDGILGEWA 417
            A YI+  +PL+ + L  S+A  RRNAAFCAG +A+ GG++ + YY +IL+ L+PLF  +    +  V DNAA AVARMIM  PQSIP++QVLPVF+ ALPLK D  E+  VY C+  L+   +P+ L L+  ++  +A
Sbjct:  195 ASYIDRLMPLVLKELASSSATNRRNAAFCAGELAKNGGESTLKYYNDILRGLYPLFGESEP--DDAVRDNAAGAVARMIMVHPQSIPLNQVLPVFLRALPLKEDHEESMTVYNCVSMLVLSSNPQILSLVPELVNIFA 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95648.16969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIB4_9PHAE4.650e-6580.60Importin N-terminal domain-containing protein n=2 ... [more]
A0A835ZQ81_9STRA5.890e-4052.99Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S2D6V2_9STRA2.720e-3854.69Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1D6JWX3_MAIZE4.020e-3348.53ARM repeat superfamily protein n=1 Tax=Zea mays Ta... [more]
A0A067CRP9_SAPPC4.220e-3348.53Importin N-terminal domain-containing protein n=2 ... [more]
A0A453IGA0_AEGTS1.330e-3247.79Uncharacterized protein n=6 Tax=Poaceae TaxID=4479... [more]
Q10NR4_ORYSJ1.930e-3247.06HEAT repeat family protein, expressed n=1 Tax=Oryz... [more]
A0A7R9Z5S6_9STRA3.210e-3250.82Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2VZD1_9STRA4.510e-3252.89Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1R3GRI7_COCAP7.990e-3247.83Armadillo-like helical n=3 Tax=Malvaceae TaxID=362... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95648contigH-elongata_contig95648:42..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue3.4e-52
Seed eggNOG ortholog2880.D7FQF7
KEGG koko:K20221
KEGG TC1.I.1
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0140104,GO:0140142
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImportin-beta, N-terminal domain
Ec32 orthologEc-01_006300.1
Exons2
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931351.0146043-CDS-H-elongata_contig95648:41..3431622931351.0146043-CDS-H-elongata_contig95648:41..343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95648 42..343 -
1691679801.1528487-CDS-H-elongata_contig95648:41..3431691679801.1528487-CDS-H-elongata_contig95648:41..343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95648 42..343 -
1622931351.0291338-CDS-H-elongata_contig95648:641..7561622931351.0291338-CDS-H-elongata_contig95648:641..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95648 642..756 -
1691679801.164603-CDS-H-elongata_contig95648:641..7561691679801.164603-CDS-H-elongata_contig95648:641..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95648 642..756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95648.16969.1prot_H-elongata_contig95648.16969.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95648 42..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95648.16969.1

>prot_H-elongata_contig95648.16969.1 ID=prot_H-elongata_contig95648.16969.1|Name=mRNA_H-elongata_contig95648.16969.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
SAKYINHALPLIKRSLMDSNAGVRRNAAFCAGTMAQGGGDAIVPYYLEIL
QALHPLFSLTGKGTEGGVVDNAAAAVARMIMTSPQSIPMDQVLPVFMSAL
PLKADRSENEAVYTCLLGLIHMRHPEALRLLDGILGEWA
back to top

mRNA from alignment at H-elongata_contig95648:42..756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95648.16969.1 ID=mRNA_H-elongata_contig95648.16969.1|Name=mRNA_H-elongata_contig95648.16969.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=715bp|location=Sequence derived from alignment at H-elongata_contig95648:42..756- (Himanthalia elongata Himel1 dioecious)
TCGGCAAAATACATCAACCACGCACTGCCGCTGATAAAGCGCAGTCTAAT GGACTCCAATGCGGGGGTTAGAAGAAACGCCGCGTTCTGCGCAGGGACCA TGGCTCAGGGGGGAGGTAAAAAAAGGAGAGAAGTAAGAAGGAGCAAGCAC AAGCAGTGCCAAACGCTCAGCGGAGGCCCTCGCGAGCCGACACATTCCGG ACGTTACATGGAGTTGTGTGCCGTGGCATAGTGCACTCTGAACCACCCTC GGTTTCAGCACCAGACTTGAACTCCTTTTTCGGCTGTAGGTGATTTATTT TTTATTTATTTCTGGAAGGAGGGGTAGTTGCGTGCATTGCCAGAGTCTTA TATTCTCTCTCGCCCATAACCCTCTACGTCAAATCTACCTTCTTCGTGGT TGCGTTGCTGCAGGAGATGCGATCGTACCGTACTACCTCGAGATACTGCA GGCGCTGCACCCGCTTTTTTCTTTGACGGGCAAGGGCACCGAGGGGGGAG TGGTGGACAATGCGGCCGCGGCCGTCGCGCGAATGATCATGACGTCCCCG CAGAGCATCCCCATGGATCAGGTGCTTCCCGTGTTTATGTCGGCACTGCC GCTGAAGGCCGATCGCAGCGAGAACGAAGCGGTGTACACGTGTCTCCTGG GGCTGATCCACATGCGCCATCCGGAAGCGTTGCGATTGCTCGACGGTATT CTGGGTGAGTGGGCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig95648:42..756-

>mRNA_H-elongata_contig95648.16969.1 ID=mRNA_H-elongata_contig95648.16969.1|Name=mRNA_H-elongata_contig95648.16969.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig95648:42..756- (Himanthalia elongata Himel1 dioecious)
TCGGCAAAATACATCAACCACGCACTGCCGCTGATAAAGCGCAGTCTAAT
GGACTCCAATGCGGGGGTTAGAAGAAACGCCGCGTTCTGCGCAGGGACCA
TGGCTCAGGGGGGAGTCGGCAAAATACATCAACCACGCACTGCCGCTGAT
AAAGCGCAGTCTAATGGACTCCAATGCGGGGGTTAGAAGAAACGCCGCGT
TCTGCGCAGGGACCATGGCTCAGGGGGGAGGAGATGCGATCGTACCGTAC
TACCTCGAGATACTGCAGGCGCTGCACCCGCTTTTTTCTTTGACGGGCAA
GGGCACCGAGGGGGGAGTGGTGGACAATGCGGCCGCGGCCGTCGCGCGAA
TGATCATGACGTCCCCGCAGAGCATCCCCATGGATCAGGTGCTTCCCGTG
TTTATGTCGGCACTGCCGCTGAAGGCCGATCGCAGCGAGAACGAAGCGGT
GTACACGTGTCTCCTGGGGCTGATCCACATGCGCCATCCGGAAGCGTTGC
GATTGCTCGACGGTATTCTGGGTGAGTGGGCAGAGATGCGATCGTACCGT
ACTACCTCGAGATACTGCAGGCGCTGCACCCGCTTTTTTCTTTGACGGGC
AAGGGCACCGAGGGGGGAGTGGTGGACAATGCGGCCGCGGCCGTCGCGCG
AATGATCATGACGTCCCCGCAGAGCATCCCCATGGATCAGGTGCTTCCCG
TGTTTATGTCGGCACTGCCGCTGAAGGCCGATCGCAGCGAGAACGAAGCG
GTGTACACGTGTCTCCTGGGGCTGATCCACATGCGCCATCCGGAAGCGTT
GCGATTGCTCGACGGTATTCTGGGTGAGTGGGCA
back to top