mRNA_H-elongata_contig95589.16963.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95589.16963.1
Unique NamemRNA_H-elongata_contig95589.16963.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95589.16963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95589contigH-elongata_contig95589:1256..1803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95589.16963.1prot_H-elongata_contig95589.16963.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95589 1455..1803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931349.9864042-UTR-H-elongata_contig95589:1255..14541622931349.9864042-UTR-H-elongata_contig95589:1255..1454Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95589 1256..1454 -
1691679800.6489215-UTR-H-elongata_contig95589:1255..14541691679800.6489215-UTR-H-elongata_contig95589:1255..1454Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95589 1256..1454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931350.0122263-CDS-H-elongata_contig95589:1454..15081622931350.0122263-CDS-H-elongata_contig95589:1454..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95589 1455..1508 -
1691679800.6605875-CDS-H-elongata_contig95589:1454..15081691679800.6605875-CDS-H-elongata_contig95589:1454..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95589 1455..1508 -
1622931350.0419276-CDS-H-elongata_contig95589:1575..18031622931350.0419276-CDS-H-elongata_contig95589:1575..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95589 1576..1803 -
1691679800.678908-CDS-H-elongata_contig95589:1575..18031691679800.678908-CDS-H-elongata_contig95589:1575..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95589 1576..1803 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95589.16963.1

>prot_H-elongata_contig95589.16963.1 ID=prot_H-elongata_contig95589.16963.1|Name=mRNA_H-elongata_contig95589.16963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
GVEEDVFVAADPATGVAEERAEGSLALPVQTEGDEPIAPVAAARSVEAMM
GNAGTRADAVAVTTMPELAAADTTTKGSRRKYPPQQWRMRWRS*
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mRNA from alignment at H-elongata_contig95589:1256..1803-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95589.16963.1 ID=mRNA_H-elongata_contig95589.16963.1|Name=mRNA_H-elongata_contig95589.16963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=548bp|location=Sequence derived from alignment at H-elongata_contig95589:1256..1803- (Himanthalia elongata Himel1 dioecious)
GGCGTCGAAGAGGACGTCTTCGTGGCGGCTGACCCGGCGACGGGCGTGGC
AGAGGAGAGAGCTGAAGGGAGCCTCGCGCTACCAGTACAGACCGAAGGGG
ACGAACCGATCGCTCCGGTAGCAGCCGCACGATCAGTGGAAGCGATGATG
GGGAATGCGGGGACTCGCGCGGACGCGGTTGCAGTGACCACGATGCCGGA
GCTGGCCGCCGCTGACACGACAACGAAGGTGGCAGGAATTGAGGGGGGGG
ATACACCGGCCACCAACCCCGTCGTGTTGAGGGAGGGGGTGGGAGGGATC
GAGGCGGAAGTACCCGCCGCAACAGTGGCGAATGCGGTGGCGATCGTAAC
GGCAGCAGCGATGATAATCGTCCCACAAGCGACGAGAATCCGCCAGATCG
GAAACGATACGGAGGAGGCAAGGGGGAGAGTTGTAGCGGTAGTTCAGCGC
GGTTGCGTAAGCAACGCGAGTAGGATAGGCCAATCCAGCGTCCCCAGGGA
TAGCTCCCCTTAATTAAGGGGGGAGAATTTGCAAACCGGTGTGGCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig95589:1256..1803-

>mRNA_H-elongata_contig95589.16963.1 ID=mRNA_H-elongata_contig95589.16963.1|Name=mRNA_H-elongata_contig95589.16963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig95589:1256..1803- (Himanthalia elongata Himel1 dioecious)
GGCGTCGAAGAGGACGTCTTCGTGGCGGCTGACCCGGCGACGGGCGTGGC
AGAGGAGAGAGCTGAAGGGAGCCTCGCGCTACCAGTACAGACCGAAGGGG
ACGAACCGATCGCTCCGGTAGCAGCCGCACGATCAGTGGAAGCGATGATG
GGGAATGCGGGGACTCGCGCGGACGCGGTTGCAGTGACCACGATGCCGGA
GCTGGCCGCCGCTGACACGACAACGAAGGGCGTCGAAGAGGACGTCTTCG
TGGCGGCTGACCCGGCGACGGGCGTGGCAGAGGAGAGAGCTGAAGGGAGC
CTCGCGCTACCAGTACAGACCGAAGGGGACGAACCGATCGCTCCGGTAGC
AGCCGCACGATCAGTGGAAGCGATGATGGGGAATGCGGGGACTCGCGCGG
ACGCGGTTGCAGTGACCACGATGCCGGAGCTGGCCGCCGCTGACACGACA
ACGAAGGGATCGAGGCGGAAGTACCCGCCGCAACAGTGGCGAATGCGGTG
GCGATCGTAAGGATCGAGGCGGAAGTACCCGCCGCAACAGTGGCGAATGC
GGTGGCGATCGTAA
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