mRNA_H-elongata_contig95383.16944.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95383.16944.1
Unique NamemRNA_H-elongata_contig95383.16944.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95383.16944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95383contigH-elongata_contig95383:28..485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931348.09139-CDS-H-elongata_contig95383:27..1891622931348.09139-CDS-H-elongata_contig95383:27..189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95383 28..189 -
1691679799.89121-CDS-H-elongata_contig95383:27..1891691679799.89121-CDS-H-elongata_contig95383:27..189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95383 28..189 -
1622931348.1109395-CDS-H-elongata_contig95383:389..4851622931348.1109395-CDS-H-elongata_contig95383:389..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95383 390..485 -
1691679799.9013367-CDS-H-elongata_contig95383:389..4851691679799.9013367-CDS-H-elongata_contig95383:389..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95383 390..485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95383.16944.1prot_H-elongata_contig95383.16944.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95383 28..485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95383.16944.1

>prot_H-elongata_contig95383.16944.1 ID=prot_H-elongata_contig95383.16944.1|Name=mRNA_H-elongata_contig95383.16944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
EHKSEYGKQQPQPPSQHQSSAWGAGGHQRGAKSGGGRRQPGGSRARSSYR
GVSGSAPPHGSNSAITGRDVGMSGGEDETRKGKAVG
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mRNA from alignment at H-elongata_contig95383:28..485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95383.16944.1 ID=mRNA_H-elongata_contig95383.16944.1|Name=mRNA_H-elongata_contig95383.16944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=458bp|location=Sequence derived from alignment at H-elongata_contig95383:28..485- (Himanthalia elongata Himel1 dioecious)
GAGCACAAGTCCGAGTACGGGAAGCAGCAGCCGCAACCGCCGTCGCAACA
TCAGAGCTCAGCATGGGGGGCGGGCGGTCACCAGAGAGGGGCGAAGGTAT
TGATGTTTTATGGCTTTTACTTGTTTCATATGTAAGTGGGAGTGTGCCTT
GTTTTTGTGTTAGAGGTATGCATGTGTGTATATATATATATATATAAATG
CGTGTGTTAAAAAGGTTGTTTGCTCGCACCGTACATCCCCCTCCCCCCTT
CAAACGAAAAACCTTACCGTCTCTACGCAAACCCCAACGCCATCAGAGTG
GTGGCGGCAGGCGGCAGCCGGGAGGCAGCCGGGCAAGGTCCTCCTACAGA
GGAGTATCGGGCTCGGCGCCGCCCCACGGAAGCAACTCTGCCATTACAGG
CCGCGATGTGGGTATGTCCGGTGGAGAGGATGAAACCCGAAAGGGCAAGG
CAGTGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig95383:28..485-

>mRNA_H-elongata_contig95383.16944.1 ID=mRNA_H-elongata_contig95383.16944.1|Name=mRNA_H-elongata_contig95383.16944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig95383:28..485- (Himanthalia elongata Himel1 dioecious)
GAGCACAAGTCCGAGTACGGGAAGCAGCAGCCGCAACCGCCGTCGCAACA
TCAGAGCTCAGCATGGGGGGCGGGCGGTCACCAGAGAGGGGCGAAGGAGC
ACAAGTCCGAGTACGGGAAGCAGCAGCCGCAACCGCCGTCGCAACATCAG
AGCTCAGCATGGGGGGCGGGCGGTCACCAGAGAGGGGCGAAGAGTGGTGG
CGGCAGGCGGCAGCCGGGAGGCAGCCGGGCAAGGTCCTCCTACAGAGGAG
TATCGGGCTCGGCGCCGCCCCACGGAAGCAACTCTGCCATTACAGGCCGC
GATGTGGGTATGTCCGGTGGAGAGGATGAAACCCGAAAGGGCAAGGCAGT
GGGGAGTGGTGGCGGCAGGCGGCAGCCGGGAGGCAGCCGGGCAAGGTCCT
CCTACAGAGGAGTATCGGGCTCGGCGCCGCCCCACGGAAGCAACTCTGCC
ATTACAGGCCGCGATGTGGGTATGTCCGGTGGAGAGGATGAAACCCGAAA
GGGCAAGGCAGTGGGG
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