mRNA_H-elongata_contig95344.16942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95344.16942.1
Unique NamemRNA_H-elongata_contig95344.16942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: A0A6H5KCM6_9PHAE (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM6_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.010e-38
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1
Query:   13 QLRRLFCVLSRYETLSATSDGYQMAFPAAGFRLLRQLLAVECECFASPLNNTLPSRFCSVAFDADKFFGSEGNFF 237
            QLRRLFCVLSRYETLSATSDGYQMAFPA+GFRLLR L++V+CECFASPLN TL SRFCSVA+D DKFFGSEGNFF
Sbjct:   36 QLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRHLVSVDCECFASPLNCTL-SRFCSVAYDTDKFFGSEGNFF 109          
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: D7FSB3_ECTSI (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB3_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 9.310e-35
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 1
Query:   16 LRRLFCVLSRYETLSATSDGYQMAFPAAGFRLLRQLLAVECECFASPLNNTLPSRFCSVAFDADKFFGSEGNFF 237
            LRRLFCVLSRYETLSATSDGYQMAFPA+GFRLLR L++V+CECFASPLN TL SRFCSVA+D DKFFGSEGNFF
Sbjct:  413 LRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRHLVSVDCECFASPLNCTL-SRFCSVAYDTDKFFGSEGNFF 485          
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: A0A7S0VBN6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VBN6_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 1.780e-13
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   25 LFCVLSRYETLSATSD---GYQMAFPAAGFRLLRQLLAVECECFASPLNNTLPSRFCSVAFDADKFFGSEGNFF 237
            ++CVL RY +L+       G+QMA P   +  LR    ++ ECFASPLN TLP +FCS  FD D+ FGS+GNFF
Sbjct:  433 IWCVLHRYNSLAGPEGHGGGWQMAMPPPVYEYLRHTFQIQVECFASPLNCTLP-KFCSAFFDTDEPFGSQGNFF 505          
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: A0A6T8JQC7_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8JQC7_HEMAN)

HSP 1 Score: 71.2 bits (173), Expect = 9.970e-13
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   22 RLFCVLSRYETLSATSDGYQMAFPAAGFRLLRQLLAVECECFASPLNNTLPSRFCSVAFDADKFFGSEGNFF 237
            RLFC+L RYE++  T  GYQ + P A F  L+    VE ECFASPLN TLPS + S   D D FFGS G+FF
Sbjct:  174 RLFCLLQRYESIGGT--GYQASAPKAVFDCLKDEFGVEHECFASPLNCTLPS-WGSAFKDTDSFFGSHGSFF 242          
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: A0A7J6LN67_PEROL (mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LN67_PEROL)

HSP 1 Score: 71.2 bits (173), Expect = 1.060e-12
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   19 RRLFCVLSRYETL----SATSDGYQMAFPAAGFRLLRQLLAVECECFASPLNNTLPSRFCSVAFDADKFFGSEGNFF 237
            +R++ +L RY TL    S    G+Q+A PAA   L++    V  ECFASPLN T+PS FCS+ +D D+FFGS G+FF
Sbjct:  200 QRIWLLLHRYNTLFGSKSGEGRGWQLATPAAAMELMKVRCDVTHECFASPLNATMPS-FCSLFYDTDRFFGSVGSFF 275          
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: A0A7J6NNL3_PEROL (mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NNL3_PEROL)

HSP 1 Score: 70.9 bits (172), Expect = 1.490e-12
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   22 RLFCVLSRYETL----SATSDGYQMAFPAAGFRLLRQLLAVECECFASPLNNTLPSRFCSVAFDADKFFGSEGNFF 237
            R++ +L RY TL    S    G+Q+A PAA   L++    V  ECFASPLN T+PS FCS+ +D D+FFGS G+FF
Sbjct:  217 RIWLLLHRYNTLFGSKSGEGRGWQLATPAAAMELMKVRYDVTHECFASPLNATMPS-FCSLFYDTDRFFGSVGSFF 291          
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: C5KBX9_PERM5 (PCIF1_WW domain-containing protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KBX9_PERM5)

HSP 1 Score: 68.6 bits (166), Expect = 2.540e-12
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   19 RRLFCVLSRYETLSATS----DGYQMAFPAAGFRLLRQLLAVECECFASPLNNTLPSRFCSVAFDADKFFGSEGNFF 237
            +R++ +L RY TL  +      G+Q+A PA    L++    V  ECFASPLN T+PS FCS+ +D D+FFGS G+FF
Sbjct:   12 QRIWLLLHRYNTLFGSKCGEGRGWQLATPAEAMELMQVRYGVSHECFASPLNATMPS-FCSLFYDTDRFFGSVGSFF 87          
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: A0A482S948_9ARCH (PCIF1_WW domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S948_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 2.690e-11
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   34 VLSRYETLSATSDGYQMAFPAAGFRLLRQLLAVECECFASPLN 162
            +LSRYETLS  S+GYQMAFP  GF  LR+   V  ECFASPLN
Sbjct:    1 MLSRYETLSGKSEGYQMAFPDVGFAYLRETWGVNTECFASPLN 43          
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: A0A7S1X499_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X499_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 2.990e-10
Identity = 38/71 (53.52%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   25 LFCVLSRYETLSATSDGYQMAFPAAGFRLLRQLLAVECECFASPLNNTLPSRFCSVAFDADKFFGSEGNFF 237
            L+C+L+RYE LS    GYQ A   AGFR LR  +AV+ ECFASPLN       CS   D D  FGS G+FF
Sbjct:  210 LWCLLARYEALSG--HGYQAALCEAGFRALRSAMAVDFECFASPLNCHYGPH-CSAFPDTDAPFGSLGSFF 277          
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Match: A0A196SNR9_BLAHN (PCIF1_WW domain-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SNR9_BLAHN)

HSP 1 Score: 64.3 bits (155), Expect = 3.190e-10
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   25 LFCVLSRYETLSATSDGYQMAFPAAGFRLLRQLLAVECECFASPLNN-TLPSRFCSVAFDADKFFGSEGNFF 237
            L  +L RY T+S T  GYQMA P + F LL+    ++ ECFASP+N+  L + +CS   D D  FGS+G+FF
Sbjct:  245 LLLLLLRYNTISGTVRGYQMALPTSVFELLQSKYHLQHECFASPMNSCALLNSYCSRFRDTDAPFGSKGSFF 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95344.16942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KCM6_9PHAE4.010e-3888.00PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
D7FSB3_ECTSI9.310e-3587.84PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S0VBN6_9CHLO1.780e-1350.00Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A6T8JQC7_HEMAN9.970e-1355.56Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7J6LN67_PEROL1.060e-1249.35mRNA (2'-O-methyladenosine-N(6)-)-methyltransferas... [more]
A0A7J6NNL3_PEROL1.490e-1250.00mRNA (2'-O-methyladenosine-N(6)-)-methyltransferas... [more]
C5KBX9_PERM52.540e-1246.75PCIF1_WW domain-containing protein (Fragment) n=1 ... [more]
A0A482S948_9ARCH2.690e-1167.44PCIF1_WW domain-containing protein n=1 Tax=archaeo... [more]
A0A7S1X499_9CHLO2.990e-1053.52Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A196SNR9_BLAHN3.190e-1047.22PCIF1_WW domain-containing protein n=1 Tax=Blastoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95344contigH-elongata_contig95344:1195..2039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.3e-29
Seed eggNOG ortholog2880.D7FSB3
Preferred namePCIF1
KEGG koko:K17584
GOsGO:0003002,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0007275,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0008150,GO:0009888,GO:0009892,GO:0009953,GO:0010563,GO:0010921,GO:0010923,GO:0015630,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035220,GO:0035222,GO:0035295,GO:0035303,GO:0035305,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044092,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0045936,GO:0048190,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0060429,GO:0065007,GO:0065009,GO:0070013
EggNOG free text desc.negative regulation of phosphatase activity
EggNOG OGs28P6D@1,2QVT7@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphorylated CTD interacting factor 1, WW domain
Ec32 orthologEc-20_004880.1
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931347.946476-CDS-H-elongata_contig95344:1194..13701622931347.946476-CDS-H-elongata_contig95344:1194..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95344 1195..1370 +
1691679799.8278255-CDS-H-elongata_contig95344:1194..13701691679799.8278255-CDS-H-elongata_contig95344:1194..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95344 1195..1370 +
1622931347.9648657-CDS-H-elongata_contig95344:1978..20391622931347.9648657-CDS-H-elongata_contig95344:1978..2039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95344 1979..2039 +
1691679799.8393075-CDS-H-elongata_contig95344:1978..20391691679799.8393075-CDS-H-elongata_contig95344:1978..2039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95344 1979..2039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95344.16942.1prot_H-elongata_contig95344.16942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95344 1195..2039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95344.16942.1

>prot_H-elongata_contig95344.16942.1 ID=prot_H-elongata_contig95344.16942.1|Name=mRNA_H-elongata_contig95344.16942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
STVHQLRRLFCVLSRYETLSATSDGYQMAFPAAGFRLLRQLLAVECECFA
SPLNNTLPSRFCSVAFDADKFFGSEGNFF
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mRNA from alignment at H-elongata_contig95344:1195..2039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95344.16942.1 ID=mRNA_H-elongata_contig95344.16942.1|Name=mRNA_H-elongata_contig95344.16942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=845bp|location=Sequence derived from alignment at H-elongata_contig95344:1195..2039+ (Himanthalia elongata Himel1 dioecious)
TCCACCGTCCACCAGCTGCGGCGCCTGTTCTGTGTGCTATCGCGATACGA GACGCTCTCCGCGACCTCGGACGGTTACCAGATGGCTTTTCCGGCGGCTG GGTTTCGGCTACTGAGGCAGCTCTTGGCGGTGGAGTGCGAGTGTTTCGCT AGCCCGCTGAACAACACATTACCAAGGTTTTTTAACAGAGAAATATAACG ATCGTTGAATGTGAGGTTGTGTACTTGTAGGCAGGGAGGCCTTCCTTCTG CGGAATGGACACTCGACTGCTCTCTCATCGCTCTGTTATCGAAGCGGTAA TCTATTAGTATTATAGTATAGTATTAATAAAACAGTGGTTTGATGTTTCT GCTCCGTAGAAACTCGCGCTACGGTAAGGGCTGTAAGGGCTGCAGGTGGT GACCGCATTGAGCGCGCCGTATTTTGAACCACCCTTTCCCCCTCCCCCTC CCACCCTCCCCCCTTTAAATAACAGTAATTAAGCAAACCTGGAGAGGCGT GTGTTTCGGAAATGTTTTCGTGTTGGTAACAGTGAAACTCTTATTCAGAA TGGAACTGGTTTACCTTGCCTATGCACGGAGAGGGTTCGGTCCCGAAGGG GAACATTTTTATGTGGTGCACGACGCGATTCGAGCTACGAATTGCTTAGA GAAGGGCGCCTCCTTATTCTCTATGTCAGATAAAATATTAAATCTCCTTA CTCTGTAATCAGCCAAAAAAATGCGCGTATGTGTGTTGGCGGGGTGGGGG GGGGTTCTATCCCCACTTTACGTTTATCAACGAGCAGGTTCTGTTCGGTC GCGTTCGATGCTGACAAGTTCTTCGGCAGCGAAGGAAACTTCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig95344:1195..2039+

>mRNA_H-elongata_contig95344.16942.1 ID=mRNA_H-elongata_contig95344.16942.1|Name=mRNA_H-elongata_contig95344.16942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig95344:1195..2039+ (Himanthalia elongata Himel1 dioecious)
TCCACCGTCCACCAGCTGCGGCGCCTGTTCTGTGTGCTATCGCGATACGA
GACGCTCTCCGCGACCTCGGACGGTTACCAGATGGCTTTTCCGGCGGCTG
GGTTTCGGCTACTGAGGCAGCTCTTGGCGGTGGAGTGCGAGTGTTTCGCT
AGCCCGCTGAACAACACATTACCAAGTCCACCGTCCACCAGCTGCGGCGC
CTGTTCTGTGTGCTATCGCGATACGAGACGCTCTCCGCGACCTCGGACGG
TTACCAGATGGCTTTTCCGGCGGCTGGGTTTCGGCTACTGAGGCAGCTCT
TGGCGGTGGAGTGCGAGTGTTTCGCTAGCCCGCTGAACAACACATTACCA
AGCAGGTTCTGTTCGGTCGCGTTCGATGCTGACAAGTTCTTCGGCAGCGA
AGGAAACTTCTTCCAGGTTCTGTTCGGTCGCGTTCGATGCTGACAAGTTC
TTCGGCAGCGAAGGAAACTTCTTC
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