mRNA_H-elongata_contig95342.16941.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95342.16941.1
Unique NamemRNA_H-elongata_contig95342.16941.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig95342.16941.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.340e-17
Identity = 37/62 (59.68%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 AAKAATKAIFEHHMSEVQRINKKAYDKLNTTPHDGLANYACRMNVIWDQTMSNMAESLNNMI 186
            AA+AATKA+F+HHM+EV+++N KA+ +LN   H+  ANYACR NVIW+Q+ SNMAES+N+++
Sbjct:  343 AAQAATKALFDHHMNEVEKLNPKAFIELNKREHNTWANYACRKNVIWEQSGSNMAESVNSLV 404
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BLAST of mRNA_H-elongata_contig95342.16941.1 vs. uniprot
Match: A0A6H5JA84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA84_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.800e-13
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   40 MSEVQRINKKAYDKLNTTPHDGLANYACRMNVIWDQTMSNMAESLNNMI 186
            M+EVQ +N  A+ KLN TPH+  ANYAC+ NVIWDQT SN +ESLN +I
Sbjct:    1 MNEVQNLNPAAFKKLNDTPHNTWANYACKNNVIWDQTTSNFSESLNKLI 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95342.16941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4I0_9PHAE9.340e-1759.68SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JA84_9PHAE2.800e-1363.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95342contigH-elongata_contig95342:1803..1988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931347.9030178-CDS-H-elongata_contig95342:1802..19881622931347.9030178-CDS-H-elongata_contig95342:1802..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95342 1803..1988 +
1691679799.818356-CDS-H-elongata_contig95342:1802..19881691679799.818356-CDS-H-elongata_contig95342:1802..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95342 1803..1988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95342.16941.1prot_H-elongata_contig95342.16941.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95342 1803..1988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95342.16941.1

>prot_H-elongata_contig95342.16941.1 ID=prot_H-elongata_contig95342.16941.1|Name=mRNA_H-elongata_contig95342.16941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
AAKAATKAIFEHHMSEVQRINKKAYDKLNTTPHDGLANYACRMNVIWDQT
MSNMAESLNNMI
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mRNA from alignment at H-elongata_contig95342:1803..1988+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95342.16941.1 ID=mRNA_H-elongata_contig95342.16941.1|Name=mRNA_H-elongata_contig95342.16941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig95342:1803..1988+ (Himanthalia elongata Himel1 dioecious)
GCGGCGAAGGCGGCAACCAAGGCTATCTTCGAGCATCACATGAGTGAGGT
GCAGAGGATCAACAAAAAAGCGTACGACAAGCTCAACACCACTCCGCACG
ACGGACTGGCAAACTACGCGTGCCGGATGAATGTAATCTGGGACCAAACA
ATGTCCAACATGGCAGAGTCGTTGAACAATATGATC
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Coding sequence (CDS) from alignment at H-elongata_contig95342:1803..1988+

>mRNA_H-elongata_contig95342.16941.1 ID=mRNA_H-elongata_contig95342.16941.1|Name=mRNA_H-elongata_contig95342.16941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig95342:1803..1988+ (Himanthalia elongata Himel1 dioecious)
GCGGCGAAGGCGGCAACCAAGGCTATCTTCGAGCATCACATGAGTGAGGT
GCAGAGGATCAACAAAAAAGCGTACGACAAGCTCAACACCACTCCGCACG
ACGGACTGGCAAACTACGCGTGCCGGATGAATGTAATCTGGGACCAAACA
ATGTCCAACATGGCAGAGTCGTTGAACAATATGATCGCGGCGAAGGCGGC
AACCAAGGCTATCTTCGAGCATCACATGAGTGAGGTGCAGAGGATCAACA
AAAAAGCGTACGACAAGCTCAACACCACTCCGCACGACGGACTGGCAAAC
TACGCGTGCCGGATGAATGTAATCTGGGACCAAACAATGTCCAACATGGC
AGAGTCGTTGAACAATATGATC
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