mRNA_H-elongata_contig95268.16934.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95268.16934.1
Unique NamemRNA_H-elongata_contig95268.16934.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95268.16934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95268contigH-elongata_contig95268:1500..2501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size437
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95268.16934.1prot_H-elongata_contig95268.16934.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95268 1518..2501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931347.423737-UTR-H-elongata_contig95268:1499..15171622931347.423737-UTR-H-elongata_contig95268:1499..1517Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95268 1500..1517 +
1691679799.6371639-UTR-H-elongata_contig95268:1499..15171691679799.6371639-UTR-H-elongata_contig95268:1499..1517Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95268 1500..1517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931347.4734535-CDS-H-elongata_contig95268:1517..16821622931347.4734535-CDS-H-elongata_contig95268:1517..1682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95268 1518..1682 +
1691679799.6508143-CDS-H-elongata_contig95268:1517..16821691679799.6508143-CDS-H-elongata_contig95268:1517..1682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95268 1518..1682 +
1622931347.4857106-CDS-H-elongata_contig95268:2249..25011622931347.4857106-CDS-H-elongata_contig95268:2249..2501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95268 2250..2501 +
1691679799.6681533-CDS-H-elongata_contig95268:2249..25011691679799.6681533-CDS-H-elongata_contig95268:2249..2501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95268 2250..2501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95268.16934.1

>prot_H-elongata_contig95268.16934.1 ID=prot_H-elongata_contig95268.16934.1|Name=mRNA_H-elongata_contig95268.16934.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MSGTAATTTTDVNSSSSTDNDDEGGPVRAIYNAGIATVDGCSFVGTGEDG
TDGGAIYNSVTSTELMVTDSSFSDFIVTGCGGAIYAEGAASVTLKRNTFL
RNTASASGGCVYAESGVAVEIEGGSFRLSSASEGAAVAF
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mRNA from alignment at H-elongata_contig95268:1500..2501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95268.16934.1 ID=mRNA_H-elongata_contig95268.16934.1|Name=mRNA_H-elongata_contig95268.16934.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1002bp|location=Sequence derived from alignment at H-elongata_contig95268:1500..2501+ (Himanthalia elongata Himel1 dioecious)
TTCAACACGACCCTCTTGATGTCGGGGACGGCGGCGACGACGACGACGGA
CGTCAACTCGTCCTCAAGCACCGATAACGATGACGAAGGCGGACCCGTGA
GGGCGATCTACAACGCGGGTATCGCCACCGTGGACGGCTGCTCGTTTGTG
GGGACGGGGGAGGATGGCACCGACGGGGGAGCGGTGAGTCGAATTTAGGA
TAGAGTGGAATGATGCCACGTGACGTGGCTAGATTTGGCGGTTTATTTTT
TGTTTGGTTGGGAGTGGCGGTCTAAGCCCGAAAAACATATGGTCGTGTAT
AGAGTACACCGAAGCGTGGGTGGTGGGCGAACAAGATGGACATTTTATTA
TATAATCCATGATCCCGCTGTTTCGAGGAATATAGCTGAATTTGTGGCGA
TGACATATTTACGCTAAGAAAGTACACATATTTTACTTCTACTTCCCTCT
CCTCCCAAAACTATTTCCGTGAGGGCAACATATGATCCAATGGTCACCGA
CAGACAGCAGCTTGACTCCTACCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCACCCCCACCCCCCCCCCCCCCACCCCACTCCCC
CCCACGCCCACCCCCCCCCGCCTATCCACTTCGCGNNNNNNNNNNAAAAA
TTTTCCCGGGGGGCAAAAATATGACCCAATGGCCCCCCACCAACACCCCC
TTGCTCCCCCCCCCCCCCCCCCCCCCCGCCTTTTGTCCCCTCCTTCAAAG
ATCTACAACTCCGTGACGTCAACCGAGCTGATGGTCACCGACAGCAGCTT
CTCGGATTTCATCGTGACGGGCTGCGGCGGAGCTATCTACGCGGAGGGCG
CCGCCTCTGTCACCCTCAAGCGGAACACCTTCTTGCGGAACACTGCCAGT
GCCTCGGGCGGCTGCGTCTACGCTGAGTCGGGGGTGGCGGTCGAAATCGA
GGGGGGAAGCTTCCGGCTAAGCTCCGCGTCGGAGGGGGCCGCGGTTGCGT
TC
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Coding sequence (CDS) from alignment at H-elongata_contig95268:1500..2501+

>mRNA_H-elongata_contig95268.16934.1 ID=mRNA_H-elongata_contig95268.16934.1|Name=mRNA_H-elongata_contig95268.16934.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig95268:1500..2501+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGGGACGGCGGCGACGACGACGACGGACGTCAACTCGTCCTCAAG
CACCGATAACGATGACGAAGGCGGACCCGTGAGGGCGATCTACAACGCGG
GTATCGCCACCGTGGACGGCTGCTCGTTTGTGGGGACGGGGGAGGATGGC
ACCGACGGGGGAGCGATGTCGGGGACGGCGGCGACGACGACGACGGACGT
CAACTCGTCCTCAAGCACCGATAACGATGACGAAGGCGGACCCGTGAGGG
CGATCTACAACGCGGGTATCGCCACCGTGGACGGCTGCTCGTTTGTGGGG
ACGGGGGAGGATGGCACCGACGGGGGAGCGATCTACAACTCCGTGACGTC
AACCGAGCTGATGGTCACCGACAGCAGCTTCTCGGATTTCATCGTGACGG
GCTGCGGCGGAGCTATCTACGCGGAGGGCGCCGCCTCTGTCACCCTCAAG
CGGAACACCTTCTTGCGGAACACTGCCAGTGCCTCGGGCGGCTGCGTCTA
CGCTGAGTCGGGGGTGGCGGTCGAAATCGAGGGGGGAAGCTTCCGGCTAA
GCTCCGCGTCGGAGGGGGCCGCGGTTGCGTTCATCTACAACTCCGTGACG
TCAACCGAGCTGATGGTCACCGACAGCAGCTTCTCGGATTTCATCGTGAC
GGGCTGCGGCGGAGCTATCTACGCGGAGGGCGCCGCCTCTGTCACCCTCA
AGCGGAACACCTTCTTGCGGAACACTGCCAGTGCCTCGGGCGGCTGCGTC
TACGCTGAGTCGGGGGTGGCGGTCGAAATCGAGGGGGGAAGCTTCCGGCT
AAGCTCCGCGTCGGAGGGGGCCGCGGTTGCGTTC
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