mRNA_H-elongata_contig95268.16933.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95268.16933.1
Unique NamemRNA_H-elongata_contig95268.16933.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95268.16933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95268contigH-elongata_contig95268:287..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931347.374024-CDS-H-elongata_contig95268:286..3791622931347.374024-CDS-H-elongata_contig95268:286..379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95268 287..379 +
1691679799.6114924-CDS-H-elongata_contig95268:286..3791691679799.6114924-CDS-H-elongata_contig95268:286..379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95268 287..379 +
1622931347.3862102-CDS-H-elongata_contig95268:586..7571622931347.3862102-CDS-H-elongata_contig95268:586..757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95268 587..757 +
1691679799.6204257-CDS-H-elongata_contig95268:586..7571691679799.6204257-CDS-H-elongata_contig95268:586..757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95268 587..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95268.16933.1prot_H-elongata_contig95268.16933.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95268 287..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95268.16933.1

>prot_H-elongata_contig95268.16933.1 ID=prot_H-elongata_contig95268.16933.1|Name=mRNA_H-elongata_contig95268.16933.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
VESTAFYSNTEPGANLTIAAAAEISAANGSQIENRRGEALDMTCEGNVPS
ECEVVTSVSTLLFEATVGCHVCDQEGQTAAGLDNATG*
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mRNA from alignment at H-elongata_contig95268:287..757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95268.16933.1 ID=mRNA_H-elongata_contig95268.16933.1|Name=mRNA_H-elongata_contig95268.16933.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=471bp|location=Sequence derived from alignment at H-elongata_contig95268:287..757+ (Himanthalia elongata Himel1 dioecious)
GTGGAGTCGACGGCGTTTTATTCGAACACGGAGCCTGGGGCCAACCTCAC
CATCGCGGCCGCGGCGGAGATCAGCGCCGCGAACGGTTCACAGGTAAGCG
TGGAACTCCCACTTGTGTGCGTGTCTGTCTTGAAGTATCTCACGAATCTC
ATGACACAAAAGAGTCTTTCGTGGCAAATAAAGTCATTTGTGCCCCAACC
CCTTATCCCCACAAACCACCTGTCTTGCCCTTAATCGTCCCCTGTCCCCT
GTCCTGTCTTGTCCGTCCCCGGCCTCACAAAAACGCACGGCGGCCGTAAG
ATCGAGAACCGAAGAGGGGAAGCTCTGGACATGACGTGCGAAGGCAACGT
GCCTTCGGAATGCGAGGTGGTGACCTCCGTGTCGACCCTCCTGTTCGAGG
CCACGGTGGGCTGTCATGTCTGCGACCAAGAGGGGCAGACGGCGGCGGGC
TTGGACAACGCCACCGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig95268:287..757+

>mRNA_H-elongata_contig95268.16933.1 ID=mRNA_H-elongata_contig95268.16933.1|Name=mRNA_H-elongata_contig95268.16933.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig95268:287..757+ (Himanthalia elongata Himel1 dioecious)
GTGGAGTCGACGGCGTTTTATTCGAACACGGAGCCTGGGGCCAACCTCAC
CATCGCGGCCGCGGCGGAGATCAGCGCCGCGAACGGTTCACAGGTGGAGT
CGACGGCGTTTTATTCGAACACGGAGCCTGGGGCCAACCTCACCATCGCG
GCCGCGGCGGAGATCAGCGCCGCGAACGGTTCACAGATCGAGAACCGAAG
AGGGGAAGCTCTGGACATGACGTGCGAAGGCAACGTGCCTTCGGAATGCG
AGGTGGTGACCTCCGTGTCGACCCTCCTGTTCGAGGCCACGGTGGGCTGT
CATGTCTGCGACCAAGAGGGGCAGACGGCGGCGGGCTTGGACAACGCCAC
CGGGTAGATCGAGAACCGAAGAGGGGAAGCTCTGGACATGACGTGCGAAG
GCAACGTGCCTTCGGAATGCGAGGTGGTGACCTCCGTGTCGACCCTCCTG
TTCGAGGCCACGGTGGGCTGTCATGTCTGCGACCAAGAGGGGCAGACGGC
GGCGGGCTTGGACAACGCCACCGGGTAG
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