mRNA_H-elongata_contig95210.16928.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig95210.16928.1
Unique NamemRNA_H-elongata_contig95210.16928.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig95210.16928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig95210contigH-elongata_contig95210:486..2104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1047
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig95210.16928.1prot_H-elongata_contig95210.16928.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig95210 491..808 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931346.669436-UTR-H-elongata_contig95210:485..4901622931346.669436-UTR-H-elongata_contig95210:485..490Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95210 486..490 -
1691679799.290395-UTR-H-elongata_contig95210:485..4901691679799.290395-UTR-H-elongata_contig95210:485..490Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95210 486..490 -
1622931346.700947-UTR-H-elongata_contig95210:808..9231622931346.700947-UTR-H-elongata_contig95210:808..923Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95210 809..923 -
1691679799.3085692-UTR-H-elongata_contig95210:808..9231691679799.3085692-UTR-H-elongata_contig95210:808..923Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95210 809..923 -
1622931346.7196527-UTR-H-elongata_contig95210:1189..14751622931346.7196527-UTR-H-elongata_contig95210:1189..1475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95210 1190..1475 -
1691679799.3180785-UTR-H-elongata_contig95210:1189..14751691679799.3180785-UTR-H-elongata_contig95210:1189..1475Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95210 1190..1475 -
1622931346.7350516-UTR-H-elongata_contig95210:1781..21041622931346.7350516-UTR-H-elongata_contig95210:1781..2104Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95210 1782..2104 -
1691679799.3277311-UTR-H-elongata_contig95210:1781..21041691679799.3277311-UTR-H-elongata_contig95210:1781..2104Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig95210 1782..2104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931346.6862626-CDS-H-elongata_contig95210:490..8081622931346.6862626-CDS-H-elongata_contig95210:490..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95210 491..808 -
1691679799.2994077-CDS-H-elongata_contig95210:490..8081691679799.2994077-CDS-H-elongata_contig95210:490..808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig95210 491..808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig95210.16928.1

>prot_H-elongata_contig95210.16928.1 ID=prot_H-elongata_contig95210.16928.1|Name=mRNA_H-elongata_contig95210.16928.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MPCARTGYLVMLYEVTRADEVTRADAGLYITPDRISTMFYLNFCEADVSK
TNISRESAFATLKADSVAAKALLSNAKDGVFFKLLRDVQNGEEEELLLSY
RYTLG*
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mRNA from alignment at H-elongata_contig95210:486..2104-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig95210.16928.1 ID=mRNA_H-elongata_contig95210.16928.1|Name=mRNA_H-elongata_contig95210.16928.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1619bp|location=Sequence derived from alignment at H-elongata_contig95210:486..2104- (Himanthalia elongata Himel1 dioecious)
ACAGGGGAATTCACCGCGGCAAGCCTCATCCTGGAGAGTAGCCCCTTGAC
GTCTGTCCACCTTGGTGGTCGATCTGGACGTCCGGCTTGTGAGTCCAAGA
ACTACTACCTCCCTCAGGTGTCGTCCATCCTCGTTTCTCACAAGACAACC
AAATTTGTGTGTCATGGCAGTGGTATGGCGGCGCATACTATCCGGAAGGC
GAAGACCCCTCGTGTTGAAAGTCCTCGTCGCCCTGATTTGGAAGCCGCCG
GCGTCGTCATTTCCGCGCAGCACCCAGACAGGGGCACTTTCCTACCGCAT
GCGGATGATCGCCTAATCAAACGGTAAAAAAATTAGGTGGAAGGATCGGG
GACGCCGTTGTGTGCATTCAAACTATAACTTCCACCACGATTGGTGGTTT
CACAGTTCGGTTGGTGCCGCTTCGATTAAACCACTGTTATAATATTTTCC
TAGCTATTTCAATGGTGCTAATCTCATGCGGCGTTGGCGATGTGGTCACA
TGTAGCACCCTGTTCATGTTTATTTCTATTTACAAACAAGACGCAACATG
TTCGGTTACCATCGCACCAACGATGAAGTGACGACATCCGTTCGTGCCCT
TTTCTCGTATCTTTGTTGTCGGGTTGTAGCTTTTCGGATCCCGGCGATGC
TTTCCTCGTCACATAGGCAGGCAAGGACGACATTGATGATCTTGTTATTA
GTGAAGGGCGAACTTACATAGGCTTAGTGGCTGATGCGGGTAAACTAGAG
GAAATTTCTGCGCGACTTGGATTGGCGTGCGCGACGGCCGTCGAGAGAGG
ATGGTTTTCGACGTTGAACCAGCCGCCTGTGACCGTGGGAGTGGACCGCC
TCCCAGTCTGCGTTCCAAGAGCCAACATTTCGTCTAACGCGGCCAAAGCT
TTGGCGGAGAAGGAGGTAAATTTCGTGAATGATGACGAACACGTGACAGA
TGCCGCTCATGGTCGCACGGATCGAGGCCGATATACACGGCCTAGAGATC
AAGGTGTGTTCATGAGGGCCCCATCTTTCTCTTCATCATTGTATAGCTTT
CAGATATGAGACATGTAATGCTGGCTTTATATTTCTCCATAGTCCCCTGA
CAGGTTATTGTGTTTTTTTACGCGTCTAACCTTTACTTCGTCGCCTGTTC
CTATGATCAATGGCGCCCGTTTATCTCTCAGGAATCTTCGTTGAACGACC
TCGGAGTCTTTGCTGCACGGGACTTGACAAAGGCGGAGTTCCCGCCGTTG
CACGTGATGGGTTCCTTCGCAGTCTTAGATTACGCTGACGTTGACAATGC
CATGCGCGCGGACGGGATACCTCGTTATGTTGTATGAGGTGACAAGAGCG
GATGAGGTGACAAGAGCAGATGCAGGCTTGTATATTACGCCTGATCGCAT
CAGCACTATGTTCTACCTAAATTTTTGCGAGGCGGACGTCTCAAAAACCA
ATATTTCTAGGGAGTCAGCATTTGCGACCCTTAAGGCTGATAGTGTGGCG
GCGAAAGCTCTCCTGTCGAACGCTAAAGACGGAGTGTTTTTCAAACTCTT
GCGTGACGTGCAAAACGGGGAAGAGGAAGAGTTGTTGCTATCATACCGAT
ATACATTAGGTTAGAGACG
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Coding sequence (CDS) from alignment at H-elongata_contig95210:486..2104-

>mRNA_H-elongata_contig95210.16928.1 ID=mRNA_H-elongata_contig95210.16928.1|Name=mRNA_H-elongata_contig95210.16928.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig95210:486..2104- (Himanthalia elongata Himel1 dioecious)
ATGCCATGCGCGCGGACGGGATACCTCGTTATGTTGTATGAGGTGACAAG
AGCGGATGAGGTGACAAGAGCAGATGCAGGCTTGTATATTACGCCTGATC
GCATCAGCACTATGTTCTACCTAAATTTTTGCGAGGCGGACGTCTCAAAA
ACCAATATTTCTAGGGAGTCAGCATTTGCGACCCTTAAGGCTGATAGTGT
GGCGGCGAAAGCTCTCCTGTCGAACGCTAAAGACGGAGTGTTTTTCAAAC
TCTTGCGTGACGTGCAAAACGGGGAAGAGGAAGAGTTGTTGCTATCATAC
CGATATACATTAGGTTAGATGCCATGCGCGCGGACGGGATACCTCGTTAT
GTTGTATGAGGTGACAAGAGCGGATGAGGTGACAAGAGCAGATGCAGGCT
TGTATATTACGCCTGATCGCATCAGCACTATGTTCTACCTAAATTTTTGC
GAGGCGGACGTCTCAAAAACCAATATTTCTAGGGAGTCAGCATTTGCGAC
CCTTAAGGCTGATAGTGTGGCGGCGAAAGCTCTCCTGTCGAACGCTAAAG
ACGGAGTGTTTTTCAAACTCTTGCGTGACGTGCAAAACGGGGAAGAGGAA
GAGTTGTTGCTATCATACCGATATACATTAGGTTAG
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