mRNA_H-elongata_contig94829.16894.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94829.16894.1
Unique NamemRNA_H-elongata_contig94829.16894.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: D8LQ23_ECTSI (Exostosin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ23_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.310e-11
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 FCFCPRGDSSTSRRIFDAVAAGCIPVVTSRVVTSLPFYE 117
            FCFCPRGD+ +SRRIFDAVAAGC P+VT   V  LPF E
Sbjct:  397 FCFCPRGDTESSRRIFDAVAAGCTPIVTEASVAVLPFSE 435
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: A0A6H5LR87_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LR87_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 4.100e-9
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 FCFCPRGDSSTSRRIFDAVAAGCIPVVTSRVVTSLPFYE 117
            FCF PRGD+ +SRR+FDA+AAGC P+VT   V  LPF +
Sbjct:  200 FCFSPRGDTESSRRLFDAIAAGCTPIVTEATVPMLPFSQ 238
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: A0A6H5KWD0_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.180e-9
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 FCFCPRGDSSTSRRIFDAVAAGCIPVVTSRVVTSLPFYE 117
            FCF PRGD+ +SRR+FDA+AAGC P+VT   V  LPF +
Sbjct:  191 FCFSPRGDTESSRRLFDAIAAGCTPIVTEATVAVLPFSQ 229
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: A0A6H5JMN7_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.640e-9
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 FCFCPRGDSSTSRRIFDAVAAGCIPVVTSRVVTSLPFYE 117
            FCF PRGD+ +SRR+FDA+AAGC P+VT   V  LPF +
Sbjct:  163 FCFSPRGDTESSRRLFDAIAAGCTPIVTEATVPMLPFSQ 201
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: A0A7S0GXC2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GXC2_MICPS)

HSP 1 Score: 54.7 bits (130), Expect = 1.500e-7
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 FCFCPRGDSSTSRRIFDAVAAGCIPVVTSR-VVTSLPF 111
            FC+ PRGD+ TSRRIFDAVAAGCIPVV S  +   LPF
Sbjct:  173 FCWVPRGDNPTSRRIFDAVAAGCIPVVVSDDIARYLPF 210
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: A0A7S0SXP0_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SXP0_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 2.540e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 FCFCPRGDSSTSRRIFDAVAAGCIPVVTSR-VVTSLPF 111
            +C+ PRGD+ TSRR+FDA+AAGCIPVV S  +   LPF
Sbjct:  407 YCWVPRGDNPTSRRMFDALAAGCIPVVVSDDIARYLPF 444
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: A0A0M0JFT8_9EUKA (Exostosin domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFT8_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 3.470e-6
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    4 CFCPRGDSSTSRRIFDAVAAGCIPVVTSRVVTSLP 108
            CF PRGD+ TSRR+FDA+A GC+PVV  +VV  LP
Sbjct:  965 CFVPRGDTDTSRRLFDALATGCVPVVV-KVVGGLP 998
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: A0A7S4GD31_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GD31_9EUGL)

HSP 1 Score: 50.8 bits (120), Expect = 3.480e-6
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 FCFCPRGDSSTSRRIFDAVAAGCIPVVTSRVVTSLPFYE 117
            FC  PRGD+ TS+RIF+++AAGC+P++ S  + SLPF +
Sbjct:  348 FCLAPRGDTPTSQRIFNSIAAGCVPIIVSDGI-SLPFID 385
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: A0A7S1HFZ4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HFZ4_HEMAN)

HSP 1 Score: 50.4 bits (119), Expect = 4.760e-6
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 CFCPRGDSSTSRRIFDAVAAGCIPVVTSR---VVTSLPF 111
            CFCP+GD+ TS R+F+AVAAGC+P+V S    + T++PF
Sbjct:  495 CFCPQGDAPTSGRVFEAVAAGCVPLVISPRDLMPTNMPF 533
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BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Match: C5K4E6_PERM5 (Exostosin domain-containing protein (Fragment) n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5K4E6_PERM5)

HSP 1 Score: 47.4 bits (111), Expect = 8.260e-6
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 FCFCPRGDSSTSRRIFDAVAAGCIPVVTSRVVTSLPF 111
            FCF PRG++  +RRIFDA+ +GCIPVV S  +   PF
Sbjct:   22 FCFIPRGNTPWTRRIFDAIISGCIPVVLSNAIV-FPF 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94829.16894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LQ23_ECTSI8.310e-1171.79Exostosin domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5LR87_9PHAE4.100e-961.54Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KWD0_9PHAE6.180e-961.54Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMN7_9PHAE6.640e-961.54Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S0GXC2_MICPS1.500e-771.05Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0SXP0_9CHLO2.540e-663.16Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A0M0JFT8_9EUKA3.470e-665.71Exostosin domain-containing protein n=1 Tax=Chryso... [more]
A0A7S4GD31_9EUGL3.480e-653.85Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1HFZ4_HEMAN4.760e-656.41Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
C5K4E6_PERM58.260e-656.76Exostosin domain-containing protein (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94829contigH-elongata_contig94829:120..239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue8.6e-09
Seed eggNOG ortholog2880.D8LQ23
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931343.2581146-CDS-H-elongata_contig94829:119..2391622931343.2581146-CDS-H-elongata_contig94829:119..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94829 120..239 +
1691679797.8096817-CDS-H-elongata_contig94829:119..2391691679797.8096817-CDS-H-elongata_contig94829:119..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94829 120..239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94829.16894.1prot_H-elongata_contig94829.16894.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94829 120..239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94829.16894.1

>prot_H-elongata_contig94829.16894.1 ID=prot_H-elongata_contig94829.16894.1|Name=mRNA_H-elongata_contig94829.16894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
FCFCPRGDSSTSRRIFDAVAAGCIPVVTSRVVTSLPFYE*
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mRNA from alignment at H-elongata_contig94829:120..239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94829.16894.1 ID=mRNA_H-elongata_contig94829.16894.1|Name=mRNA_H-elongata_contig94829.16894.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig94829:120..239+ (Himanthalia elongata Himel1 dioecious)
TTCTGCTTCTGCCCCAGGGGTGATTCCAGCACCAGCCGAAGGATCTTTGA
TGCTGTCGCTGCCGGGTGCATCCCGGTTGTCACTTCACGAGTAGTTACCT
CCTTGCCTTTCTACGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig94829:120..239+

>mRNA_H-elongata_contig94829.16894.1 ID=mRNA_H-elongata_contig94829.16894.1|Name=mRNA_H-elongata_contig94829.16894.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig94829:120..239+ (Himanthalia elongata Himel1 dioecious)
TTCTGCTTCTGCCCCAGGGGTGATTCCAGCACCAGCCGAAGGATCTTTGA
TGCTGTCGCTGCCGGGTGCATCCCGGTTGTCACTTCACGAGTAGTTACCT
CCTTGCCTTTCTACGAGTGATTCTGCTTCTGCCCCAGGGGTGATTCCAGC
ACCAGCCGAAGGATCTTTGATGCTGTCGCTGCCGGGTGCATCCCGGTTGT
CACTTCACGAGTAGTTACCTCCTTGCCTTTCTACGAGTGA
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