mRNA_H-elongata_contig9444.16867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9444.16867.1
Unique NamemRNA_H-elongata_contig9444.16867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: D7FKN4_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN4_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 8.280e-54
Identity = 152/372 (40.86%), Postives = 168/372 (45.16%), Query Frame = 1 
Query:    1 GRVIGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVMEYRCAIQARWTERREAQLKQEREA-----FHSAPPHETGSGLL-----------------------------------------------------------------------------------------------------------------SVGSRA-----------------------------------VLKPPPLSAGACSTPA----EAYLERGRGRVEDPWRDFADDGRNGGSSTSGLEGREGGEEDFEAAERRRVDAAAELQRQKEQEEWD 645
            GR+IGRGACSVVNLA+HKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENG CS LV FFGAFKRPDGSIRVVLEYMDRGSLADV EYR  IQARW  RR+   ++ +EA        A  HE  +G +                                                                                                                 S GSR+                                    L+P  LS GA +TPA    E  LERGRG+VE PW D   DG  GG     LE     ++  EAAERRRV+AAAEL+RQKEQEEWD
Sbjct:   63 GRIIGRGACSVVNLARHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGCCSHLVDFFGAFKRPDGSIRVVLEYMDRGSLADVTEYRTHIQARWNARRKGVERESKEAGPTEVAKKAGVHEGAAGKVPQIGGENGEGLSHRTETFPLSDEAEVAFPPERGQDGGGLERLATHPQVSDDXXXMPATLERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSGSVVKNLAVNGSGSSSGSRSNGVAHQTRQHRQHRTGSFSSNSSIGESQQQQEANISLEPLMLSEGALATPAAGVKETLLERGRGQVEAPWLDDNGDGGAGGRPALRLEQELEEDDRPEAAERRRVEAAAELERQKEQEEWD 434
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: A0A835YQN1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQN1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.030e-17
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    4 RVIGRGACSVVNLAK--HKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVM 267
            R +GRGACSVV+ A+  H+   +  AVKVF+LLD E++RQL +EI  L+RS E   C+ LV F GA++RP+G + +VLEYMDRGSL D++
Sbjct:   57 RTLGRGACSVVHPARLVHEGLERPCAVKVFNLLDEEQQRQLSQEIQILVRSHEE-RCTALVRFLGAYQRPEGKVSIVLEYMDRGSLQDLI 145
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: A0A7S2UX05_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX05_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.840e-15
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 RVIGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVME 270
            R+IG+GACS V L +H   G L+AVK F+  DREKR+QL +EI TL +      C  L+ F GA+ +    I VVLEYMDRGSL DV++
Sbjct:   58 RIIGQGACSTVQLMRHVRDGTLYAVKRFNFYDREKRKQLMQEINTLHQM----DCQALIEFHGAYTK-SSHIYVVLEYMDRGSLTDVIQ 141
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: D7FTM4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM4_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.060e-14
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    4 RVIGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVM 267
            R +GRGACSVV  A+H +T +L+A+KVFS+ D++KR QL +E+ TL  S+E   C  L+         DGSI VVLEYMDRGSL+DV+
Sbjct:   78 RELGRGACSVVKQAQHVETRELYAIKVFSVFDKDKRSQLLKEVETL-SSME---CPSLINL-------DGSIHVVLEYMDRGSLSDVI 154
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: A0A7S0SXD7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXD7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.750e-13
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 GRVIGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVME 270
            G +IGRG  S+V    H  TG   A+KV +L DR KR QL REI TL     +  C  L+ F+GAF R +G+I + LEYMD GSLA+V++
Sbjct:   60 GEIIGRGCSSIVIYGIHSPTGTPLALKVINLFDRSKRDQLIREIATLY----DAQCPNLITFYGAFYR-EGAITIALEYMDGGSLANVLD 144
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: A0A482S9U0_9ARCH (Protein kinase domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9U0_9ARCH)

HSP 1 Score: 76.3 bits (186), Expect = 2.010e-13
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    1 GRVIGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVM 267
            G +IGRG+  VV    H  TG   A+K+ +L DR KR QL REI TL     +  C  L+ F+GAF R +GSI + LEYMD GSLA+V+
Sbjct:   61 GEMIGRGSSGVVLRGMHAPTGTPLALKIINLFDRSKREQLIREICTLY----DAQCPNLITFYGAFYR-EGSITIALEYMDGGSLANVL 144
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: A0A7S3H825_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H825_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.260e-13
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    1 GRVIGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVMEYRCAIQAR 294
            G  IG+GACS VN+A+HK TG+++A+K+F++ D+ +  QL  EI  LL S +   C  L+   GAF   +GSI V+LEYMD+GSL  +M+ +  I  R
Sbjct:   69 GNRIGQGACSSVNVARHKRTGEVYAIKMFNVYDKGQASQLYNEI-LLLTSFQ---CDCLISLKGAF-HDEGSIGVILEYMDKGSLEFLMDEKIEISER 161
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: A0A7S1UEJ8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEJ8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.750e-13
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   10 IGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVM 267
            IGRGACS V LAK +  G+L+A+K+F++ D  KRRQL  E+    +SL N  C  L+GF+GAF    G +  VLEYMD G+L DV+
Sbjct:   79 IGRGACSQVQLAKSRTDGRLYALKIFNIFDGPKRRQLWTEV----KSLWNVHCPALIGFYGAFL-DGGRVCCVLEYMDCGTLEDVI 159
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: A0A7S2C4M9_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C4M9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.480e-12
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    7 VIGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVMEY 273
            V+GRGACS V  A H+ TG+++ VK F++ D++KR  L +E+  LL    +  C  +V +FG +   D  + VVLE+MDRGS+ D++++
Sbjct:   46 VLGRGACSEVKRATHRRTGEVYVVKCFNMFDKDKRAMLMKEVKFLL----DIDCQTIVKWFGTYMDHDDQVNVVLEFMDRGSVEDLVKH 130
[Close]
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Match: A0A6V1SQ10_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SQ10_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 1.530e-12
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 GRVIGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRSLENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVM 267
            G VIG GA SVV  A H  TG   A+KV ++ D+ KR QL +EI TL     N  C  L+ F+GAF R +GSI + LEYM+ GSLA+V+
Sbjct:   61 GEVIGSGASSVVLQAVHLPTGTPLALKVINMFDKSKRNQLIQEICTLY----NADCPSLITFYGAFYR-EGSITIALEYMNGGSLANVL 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9444.16867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKN4_ECTSI8.280e-5440.86Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835YQN1_9STRA1.030e-1754.44Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2UX05_9STRA8.840e-1551.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FTM4_ECTSI1.060e-1453.41Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S0SXD7_9STRA1.750e-1348.89Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A482S9U0_9ARCH2.010e-1349.44Protein kinase domain-containing protein n=1 Tax=a... [more]
A0A7S3H825_9STRA2.260e-1345.92Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A7S1UEJ8_9STRA2.750e-1351.16Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2C4M9_9STRA1.480e-1241.57Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6V1SQ10_HETAK1.530e-1250.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9444contigH-elongata_contig9444:2079..6833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue1e-47
Seed eggNOG ortholog2880.D7FKN4
EggNOG free text desc.MAP kinase kinase activity
EggNOG OGsKOG0581@1,KOG0581@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-09_000880.1
Exons6
Model size648
Cds size645
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9444.16867.1prot_H-elongata_contig9444.16867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9444 2080..6833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931340.5490804-CDS-H-elongata_contig9444:2079..21571622931340.5490804-CDS-H-elongata_contig9444:2079..2157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 2080..2157 -
1691679796.4540007-CDS-H-elongata_contig9444:2079..21571691679796.4540007-CDS-H-elongata_contig9444:2079..2157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 2080..2157 -
1622931340.5658233-CDS-H-elongata_contig9444:2484..27151622931340.5658233-CDS-H-elongata_contig9444:2484..2715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 2485..2715 -
1691679796.463142-CDS-H-elongata_contig9444:2484..27151691679796.463142-CDS-H-elongata_contig9444:2484..2715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 2485..2715 -
1622931340.5807202-CDS-H-elongata_contig9444:3150..31981622931340.5807202-CDS-H-elongata_contig9444:3150..3198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 3151..3198 -
1691679796.4730697-CDS-H-elongata_contig9444:3150..31981691679796.4730697-CDS-H-elongata_contig9444:3150..3198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 3151..3198 -
1622931340.5929465-CDS-H-elongata_contig9444:4697..48241622931340.5929465-CDS-H-elongata_contig9444:4697..4824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 4698..4824 -
1691679796.4860492-CDS-H-elongata_contig9444:4697..48241691679796.4860492-CDS-H-elongata_contig9444:4697..4824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 4698..4824 -
1622931340.6223614-CDS-H-elongata_contig9444:5963..60701622931340.6223614-CDS-H-elongata_contig9444:5963..6070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 5964..6070 -
1691679796.5043314-CDS-H-elongata_contig9444:5963..60701691679796.5043314-CDS-H-elongata_contig9444:5963..6070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 5964..6070 -
1622931340.6348667-CDS-H-elongata_contig9444:6779..68331622931340.6348667-CDS-H-elongata_contig9444:6779..6833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 6780..6833 -
1691679796.5161066-CDS-H-elongata_contig9444:6779..68331691679796.5161066-CDS-H-elongata_contig9444:6779..6833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9444 6780..6833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9444.16867.1

>prot_H-elongata_contig9444.16867.1 ID=prot_H-elongata_contig9444.16867.1|Name=mRNA_H-elongata_contig9444.16867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
GRVIGRGACSVVNLAKHKDTGQLFAVKVFSLLDREKRRQLDREIGTLLRS
LENGSCSQLVGFFGAFKRPDGSIRVVLEYMDRGSLADVMEYRCAIQARWT
ERREAQLKQEREAFHSAPPHETGSGLLSVGSRAVLKPPPLSAGACSTPAE
AYLERGRGRVEDPWRDFADDGRNGGSSTSGLEGREGGEEDFEAAERRRVD
AAAELQRQKEQEEWD
back to top

mRNA from alignment at H-elongata_contig9444:2079..6833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9444.16867.1 ID=mRNA_H-elongata_contig9444.16867.1|Name=mRNA_H-elongata_contig9444.16867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4755bp|location=Sequence derived from alignment at H-elongata_contig9444:2079..6833- (Himanthalia elongata Himel1 dioecious)
GGCCGCGTCATTGGGCGAGGGGCGTGTTCTGTGGTCAACCTCGCCAAGCA
TAAGGTACTGTGCAATAAATTGATATGGAGTACACAAGAGATGTGTGTAT
ATGGTGGGATTTTCTTACCCCAGGGGGACGGGGTGTACTGTAAAATAATA
TATATGTAGGCATAGATATACCACTACACCCACCAATGGTAAACTTTTTT
GACCGATTCTCTCTATAAAACCCCCCTATAGTCTGAATTTCGTGTAGAGT
GCCAGGTGCATAGAATAACCCTTTTATCGAAAAAGTAAAGAGGACCTGAA
AACCCGGTGATTTTGACCCCCGGGTTTGGTTATATTAGGGAGGGGTGGTA
TACCAGGGGGGGGTGATATTTACCCTGTCACCTACTGCGCCGGTCAGCGG
CCTAAGTTTTGCATGACTTCCCAAGAGGTTCGGTGCTCAACTAGAGAAGC
TCGTGAAAATTGGTGACAGGGGGCGCCAACTTGTTAAGTCCATGGGGGAA
GTGGTGGAAGACTGGCAAGAAATTGACCGGATGATTATCTCAACATCCTC
TCCTGATTCTGTACGACTCGCATCCACGGTGACGCCTGCCAGTAATGATT
TATGTTCAGTGTCTTCCCTTGCCTTGGCCTTTTTGTAGGCAATACCTTCG
GCGTTTTTGTTTCTTGTTTTGAGTGTGGGTGGATTAATTTGCTTTATATG
GGTTGAAAGAAACGTGTGTGTTTTTTTTTTATAATCTGGTTTTATTCATT
TTGTTGGTTCCAGGACACGGGTCAACTGTTCGCCGTGAAGGTGTTCAGCT
TGCTCGACAGGGAGAAGCGGCGCCAGCTCGACAGGGAGATTGGGACGCTC
CTGCGATCCTTGGAGAACGGGTGCGTGGCTCTCCCATGCTTTTTGCTTTT
GCTGAAGCGCGTCGATTAGTGTACCCCGCACCGCCTGCCTCTCTCGTCAC
CTTCACAACCTGCGCCCCCTTACGAGTGATTTCCACACTGCCCACCTCTA
GTTTACCACGAAAACTCGAAAGGGCACGGGTTTTCGTTTAATAAGGCGTT
TCGTTATATTTATTATGTCGATGATGCCTCCTATCGGCGGAGAAGCTTCG
AGTTTAGGAAAGGGTGAGCGAATTTTCCTTGCCCCCCCCTCCCCTCAAGC
CTCGTGAGGTCATAGTCTCAAAAGGGACAGCGGGAGCAAGCGACGTTCAA
CTATTGGATGACGATGTGTAGGAGCGTGTTGAACTTGGATCGCGATAAAA
TTTCTTAGGGAGGCGTTTACCAACCGAGGAGGGCCACCGGCAAGGTGTGA
TAGGCGTCGATACAATAGACGGCATTGATAATGCTAATCTACCCTATCGA
CAGAGAGGTAAATTATAGTGAAGTAATATAGAGAGAGAGAGTACCGGTAT
ATTTGCAGTTTGTACTTCGTTTGTACTGTATATTGTAATCTTCCGTTCTA
AGTCTCTATATACCAGATATTATATAATCACAGTATGTGTTAAACCATAT
GAAGTACAGTATGTTCTTTACGATGTATATGATACATTATAGTGTATAAT
GGACTCTCTTGGGCATTTTCGGTGTCCCACAACCCCCTTACGGTAGAAAA
AATCGCTGGGCTAGAGTTGGAAACCGGACACTGCAAGTTTCGCTATACAG
TAGCATGTATGGTGGGGGGGGGGTTGTTTTTTTGTTCTCCTGAGATCTCG
GCACCAAACGTTTCTCGTAGCTTGTATTTGCACCATTATATTTCTGGTAT
CTCTGAACTATCCAGCAATAGCGGGGGGGAAAGGGAACTTGCTCAAGAAT
CACCGAATCGAGGGGAGGGCGGGTGAAGCCCGTTTTCTTCCGAGGGCAAA
CCGTAAGCTTTTACCCCATCAAAAGCACCACAACCGGGAATACATCGGTT
GGATCCCTGGTAGGGGATTCCTTTTTATCTTCCCCTCCCCAAATCCGGGA
TGCTTTCGCCAACCCTCACCCCTCTCTTCCTTCTTCTCTCCCTTCCTCTC
TCATTTCAGATCCTGCAGTCAGCTAGTCGGCTTCTTCGGCGCGTTCAAGA
GGCCAGACGGGAGCATCAGGGTCGTGCTCGAGTACATGGACAGGGGCAGC
CTAGCAGACGTCATGGAGTACCGTTGCGCGATACAGGTAAGGCCATCAGC
GTCCAGACGGTAGAGGGGGGTAGGGAGAAGAGCAAGGAGGATCTGGTGCT
CTTTCTCTCTCTCTTTCTCTTTGATAGCATGCCCTTCTCCGTGCGCCGCA
AATCATGGAACCTCTCGTCGGGGTTAAAACAGAGCCACGGAGTGTACACG
GCGTGTGTCAGGCTCTAAACAAATTAAAAAGAGATAAAAACACAAAATTA
TGTACACACTCGAACTTGACCATTCGTGGGACACATTCGAACCTGACGAT
AGTTGGCCCCCTGGATTGTACCTCTCATGGTGCTAAGAAGGCGTGGACGT
TCGGAGGGTTGGAATGAGTTCAAGTTTTTCTAAATAAAAAAGGTTATGGG
TGTTCGGAAGGTTTGATTGAGTTTATAGTATGTTTTTCAGACGATAATAA
CACATAAGCAAAACATATCTGGTAAAAAAAATGGGAAAGATATCCCCATC
GGAAAATAAATGAAGCAAAAAAAATAAAAAATCAGTGGGGATGGTAATAT
GGTGAAAGGGGAGGGGAAATCGCCTCAAAGCCCCGCCATTTCGGGTAGAG
AAGAGGAGAGATGCATCCGAGTCATAAGGAAGGGATCTATACGGTGAGGC
CTACCGCGGATATCCGCGTCCTCCGGCTACCGTTTACAACGTAAACATCA
GTACAACTATAAACGAGTCTGTTTAACAACATGCTGTGTCACTCCAACAA
AATCACGTATAATCAAAGTATGGAACTCCCCGATTTTTACCATCACCGTA
CTGTGGAGTTGGCTACCGTACCGTCAATACCGTGGAATCTAGTTCCGTAC
CCATGAACCATGTTGTTAACGCGTCATTTCCCTACCATATCAAATGCTAC
CGTCACAAGAATCGTTACCGTGTAGAGCCCTGATTTTTAGGGGGGGGGTC
TTCATATATCCCCTCCCCCTCCGCTGTACTCTGGGGGGGGGGGATTCATC
TGTAGCGTGTTTGGAGGAAAAAGTTAAAAAATAAGCAAGCGTGGTAAGAA
AAATGCGGTTACCAAATTTTGGCGGCCAAATACCCTTCTCTTTGCGGCAT
AACCTGTTTTTTCCCCTAACCGGGATGCGTGCAAAAAAAAGGGGGAAAAG
CTTAACGCGTCGAAAAAAATAAATAAATCTGAATTCTGCCTTGATAGTAT
TTTGGACTGATCGATCAATAAACGTTGTTGTTTTTTTTCTTCTGTTTCTG
CTTCTGTTACATATAAACTAATTCCAACCCTCCAAGCAAGAATTTACCGT
GCGCCATCTTAGCACCGTCAGAGGTGCAGTCCAGGAGACCAGCTATCGTC
AGGTTTGAATGTGTAAACATTACTACTCTACTTTTTGAGCTCAAAATCGT
CGCATGTGATTTATTTATTTTTCTCTTTTTTCTTTTCTTTTTGTTTTTAT
ATTTTAGAATTCCCCGTCTCGTTCGCAAACAAAGCGCCCCCACTGCTACT
GCTGCTGTTGGTCAATACGCGCGTTGTTTCGGCAGGCCCGCTGGACGGAG
CGGCGGGAGGCGCAGCTGAAGCAGGAACGCGAGGCGAAGGAAAAGAGGAA
GGCGGCGGCGGAGGCGGCCGCCAAAGCGGCTTCCAGGGCGGCTGCCAAGG
GGCGTAGCAAGGCTGCCGCCTCATCAGGCATCGTGAGGAACGGACACGTC
GCCGCGACCCAGGTTTCCACGAAGAGTGATCACGCGCACGGGGGTAAGAC
ATCAAAGATAGTGCGCGCTACCCCTGGTTGCTGCAGAGGCCGAGAAGAGG
CTCTGGTTTCCTCTTCGCTGGAGGAGGACGATATGCCGGCGACCCTTGAG
CGATTAGGGGCGCCGCCGGCACCACAGCCCCAGCCGCAGCTGCAGCAACA
CTTGAACGGCTTTGGCAAGAGAGACCCCCGCGGTGGTAGCTCCCAGAAGA
TGAATAGTAGCAGCAGCAGCAACGGTAACTACAAGAAAAATGGAGATGGA
GGGTGGGTCTTGGAGGAGGCCTTTCATTCGGCACCACCCCATGAGACTGG
CTCCGGATTGCTCTCGGTGGGTTCGCGGGCCGTTCTGAAGCCTCCGCCGC
TGTCCGCCGGGGCGTGCTCTACACCGGCCGAGGCGTATCTGGAAAGGGGC
CGTGGGCGGGTGGAAGATCCATGGAGAGACTTCGCGGACGACGGTCGGAA
TGGAGGGAGCAGTACCTCAGGGTTGGAGGGAAGGGAAGGGGGTGAAGAGG
TTAGAAAAGGCGGGCATCGAACGACCCATTTTGATTTTTTGTATGTGTTT
TGTATGTGTGCGAGTGTGAGTTATGTGCTCAGCTCAAGGTATAGCACCCG
CATCTCTTGGCCTCTCGCACCCTCCCCCCCTCACAACCCCAACCCCCGCT
TCCCTTTGCCGCAGAAAGCGAAGGGTTTGCCCTTGCGATGGTTTGTATCT
ACCCCAAATAACATAACTGAGCACCCGCCACCTTTTCTCCGGCCGGTGTG
CCTCTGCCGGGAACACCTCGCCTCATGCTTCACCCATCCATGCATGCTCA
TGCGTAGAAACCCTCGAATCCCGCAGGACTTCGAGGCGGCGGAGAGGAGA
AGGGTGGACGCCGCGGCCGAGCTACAACGACAGAAAGAACAGGAGGAGTG
GGATC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig9444:2079..6833-

>mRNA_H-elongata_contig9444.16867.1 ID=mRNA_H-elongata_contig9444.16867.1|Name=mRNA_H-elongata_contig9444.16867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig9444:2079..6833- (Himanthalia elongata Himel1 dioecious)
GGCCGCGTCATTGGGCGAGGGGCGTGTTCTGTGGTCAACCTCGCCAAGCA
TAAGGGCCGCGTCATTGGGCGAGGGGCGTGTTCTGTGGTCAACCTCGCCA
AGCATAAGGACACGGGTCAACTGTTCGCCGTGAAGGTGTTCAGCTTGCTC
GACAGGGAGAAGCGGCGCCAGCTCGACAGGGAGATTGGGACGCTCCTGCG
ATCCTTGGAGAACGGGACACGGGTCAACTGTTCGCCGTGAAGGTGTTCAG
CTTGCTCGACAGGGAGAAGCGGCGCCAGCTCGACAGGGAGATTGGGACGC
TCCTGCGATCCTTGGAGAACGGATCCTGCAGTCAGCTAGTCGGCTTCTTC
GGCGCGTTCAAGAGGCCAGACGGGAGCATCAGGGTCGTGCTCGAGTACAT
GGACAGGGGCAGCCTAGCAGACGTCATGGAGTACCGTTGCGCGATACAGA
TCCTGCAGTCAGCTAGTCGGCTTCTTCGGCGCGTTCAAGAGGCCAGACGG
GAGCATCAGGGTCGTGCTCGAGTACATGGACAGGGGCAGCCTAGCAGACG
TCATGGAGTACCGTTGCGCGATACAGGCCCGCTGGACGGAGCGGCGGGAG
GCGCAGCTGAAGCAGGAACGCGAGGCCCGCTGGACGGAGCGGCGGGAGGC
GCAGCTGAAGCAGGAACGCGAGGCCTTTCATTCGGCACCACCCCATGAGA
CTGGCTCCGGATTGCTCTCGGTGGGTTCGCGGGCCGTTCTGAAGCCTCCG
CCGCTGTCCGCCGGGGCGTGCTCTACACCGGCCGAGGCGTATCTGGAAAG
GGGCCGTGGGCGGGTGGAAGATCCATGGAGAGACTTCGCGGACGACGGTC
GGAATGGAGGGAGCAGTACCTCAGGGTTGGAGGGAAGGGAAGGGGGTGAA
GAGGCCTTTCATTCGGCACCACCCCATGAGACTGGCTCCGGATTGCTCTC
GGTGGGTTCGCGGGCCGTTCTGAAGCCTCCGCCGCTGTCCGCCGGGGCGT
GCTCTACACCGGCCGAGGCGTATCTGGAAAGGGGCCGTGGGCGGGTGGAA
GATCCATGGAGAGACTTCGCGGACGACGGTCGGAATGGAGGGAGCAGTAC
CTCAGGGTTGGAGGGAAGGGAAGGGGGTGAAGAGGACTTCGAGGCGGCGG
AGAGGAGAAGGGTGGACGCCGCGGCCGAGCTACAACGACAGAAAGAACAG
GAGGAGTGGGATGACTTCGAGGCGGCGGAGAGGAGAAGGGTGGACGCCGC
GGCCGAGCTACAACGACAGAAAGAACAGGAGGAGTGGGAT
back to top