mRNA_H-elongata_contig94423.16865.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94423.16865.1
Unique NamemRNA_H-elongata_contig94423.16865.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 67.0 bits (162), Expect = 7.760e-10
Identity = 42/155 (27.10%), Postives = 72/155 (46.45%), Query Frame = 1
Query:   94 VQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVINQFDRLESENSAAESKAMFAGRGNGHGSNPNPRCQICSRTGHTAQGCKK 558
            ++ A+S  EAW+ L + Y   GL  R  L    +  ++        YL ++ ++  +L  +E P+D + V ++ILSGLT  YD  +  +E SS   + + I   ++ +  R E +    E  A+   +        NP+C  C   GH  + C K
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSSSKLSTEVISTKLLQETQRREEK---TEETALITQK--------NPKCFGCGARGHMLRNCPK 214          
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: A0A0A9YWZ9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YWZ9_LYGHE)

HSP 1 Score: 65.1 bits (157), Expect = 1.990e-9
Identity = 48/188 (25.53%), Postives = 90/188 (47.87%), Query Frame = 1
Query:    1 DDDETRPDQLRTVHQAWVSLITTCKGVAFDIVQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVI--NQFDRLESENSAAESKAMFAGRGNGHGSNPNPRCQICSRTGHTAQGCKK 558
            DD      + R   +A   +    K   +  V+GAE+  EAW+ L   +   GL  R  L      +R+E  +    Y+  V  + ++L  ++  +D + + +++LSGLT +YD  V  +E+S+   T D I+  ++  +++++ +S++SA  S+ +      G  S     C  C   GH  + C+K
Sbjct:   47 DDSSDESQKQRRDQKALAKICLMVKPNCYSHVRGAETAVEAWNNLQTAFEDKGLYRRLGLFRALVRVRLENFKSMDAYVNEVINISQKLADIDSEIDDEFLGVILLSGLTTEYDPMVMAIENSAQKITSDLIKSKLLLDDKYNKQDSKDSALLSRNV------GKHSKNEFVCYGCGLPGHIKRNCRK 228          
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: A0A0J7K5G8_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K5G8_LASNI)

HSP 1 Score: 65.1 bits (157), Expect = 4.880e-9
Identity = 46/184 (25.00%), Postives = 88/184 (47.83%), Query Frame = 1
Query:    1 DDDETRPDQLRTVHQAWVSLITTCKGVAFDIVQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVINQFDRLESENSAAESKAMFAGRGNGHGSNPNPRCQICSRTGHTAQGC 552
            +D  T  ++ R   +A   +    K  A+  V+ AES  EAW  L + Y   GL  R  L      M ++   +   Y+  +  + ++L  +  P+D + + +++LSGLT  Y+  +  LES++   T D+++  ++   D   S +S++  KA+++ + N   +     C  C++ GH    C
Sbjct:   45 EDSSTESEKNRKEQKALAKICLMVKPCAYAQVRSAESAREAWLNLQKAYEDKGLSRRLALLRTLAGMILQNFRNMESYVNEIMSVSQKLADMNAPLDDEFIAVIMLSGLTEDYNPMIMALESANVGLTSDFVKAKLLQ--DTKHSISSSSGDKALYS-KNNRVYNKRKVVCYKCNKEGHFKNEC 225          
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: A0A6J2YVB7_SITOR (uncharacterized protein LOC115890636 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YVB7_SITOR)

HSP 1 Score: 60.1 bits (144), Expect = 6.120e-8
Identity = 40/147 (27.21%), Postives = 73/147 (49.66%), Query Frame = 1
Query:    1 DDDETRPDQLRTVHQAWVSLITTCKGVAFDIVQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVINQFDRLESEN 441
            DD     ++ R   +A   +    K +A+  V+ A++  EAW  L + Y   GL  R  L      +R+E       Y+     + ++L  + +PVD + + +++LSGLT +YD  V  +E+S+   T D++ +A + Q D+   +N
Sbjct:   20 DDQSKESEKKRCNEKALAKICLMIKPIAYTHVRLAKTAKEAWDNLQKAYEDQGLSRRLSLIRRLVRIRLENYSTMEAYVNETLSIAQKLADMAQPVDDEFLGVIMLSGLTSEYDPMVMAIENSNVKITSDFV-KARLMQDDKYGKDN 165          
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: A0A2H1WMK4_SPOFR (SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WMK4_SPOFR)

HSP 1 Score: 60.5 bits (145), Expect = 1.250e-7
Identity = 39/176 (22.16%), Postives = 76/176 (43.18%), Query Frame = 1
Query:   31 RTVHQAWVSLITTCKGVAFDIVQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVINQFDRLESENSAAESKAMFAGRGNGHGSNPNPRCQICSRTGHTAQGCKK 558
            + V +A   +  +        ++ A+S  EAW  L + Y   GL  R  L    +  ++        YL ++ ++  +L  +E P+D + V +++LSGLT  YD  +  +E S+   + + I + ++ +  + E +       A+   +         P+C  C   GH  + C K
Sbjct:   53 KKVDKALARIALSVTPAVIPYIRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFNTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHSTSKLSTEIISQKLLQETQKREEK---TVETALITQK--------QPKCFGCGAKGHMIRKCPK 217          
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: A0A2A4K3A2_HELVI (CCHC-type domain-containing protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4K3A2_HELVI)

HSP 1 Score: 60.8 bits (146), Expect = 1.320e-7
Identity = 39/159 (24.53%), Postives = 73/159 (45.91%), Query Frame = 1
Query:   82 AFDIVQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVINQFDRLESENSAAESKAMFAGRGNGHGSNPNPRCQICSRTGHTAQGCKK 558
            AF  V+ A++  EAW  L + +   GL  R  L    +  ++        YL ++  + ++L  +  P+D + V +++LSGLT  +D  +  LE+S+     D ++  ++ +F R E +   +   A+   +          RC  C + GH  + C K
Sbjct:   70 AFPHVRNAKTAFEAWHNLQRAFEDKGLCRRLSLLRSLFGTKLGENTSMEGYLSKITNLSQQLSDIGFPLDDEFVAVLMLSGLTSDFDPLIMALENSNTKLHSDTVKGKLLQEFQRREEKEVTSHEVALVTKK--------QFRCFRCKKPGHAKRDCPK 220          
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: UPI001F8D56D1 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8D56D1)

HSP 1 Score: 60.1 bits (144), Expect = 2.640e-7
Identity = 35/153 (22.88%), Postives = 68/153 (44.44%), Query Frame = 1
Query:   94 VQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVINQFDRLESENSAAESKAMFAGRGNGHGSNPNPRCQICSRTGHTAQGC 552
            ++ A+S  EAW+ L + Y   GL  +  L    +  ++        YL ++ ++  +L  +E P+D + + ++ILSGLT  YD  +  +E+S    T + +   ++ +  R E +     +                 +C  C R GH ++ C
Sbjct:   69 IRTAKSAYEAWNNLKKTYEGKGLCRKLGLLRSLFGTKLADSNSMDGYLNKIKEVAHQLSEIESPLDDEFIAVIILSGLTSDYDPLIMAIENSGQKLTTEHVSAKLLQETQRREDKQDGVTALVT----------RKQIKCFRCKRPGHYSRNC 211          
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: UPI00193D6898 (uncharacterized protein LOC113006278 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193D6898)

HSP 1 Score: 59.3 bits (142), Expect = 5.680e-7
Identity = 40/157 (25.48%), Postives = 82/157 (52.23%), Query Frame = 1
Query:    1 DDDETRPDQLRTVHQAWVSLITTCKGVAFDIVQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVINQFDRLESENSAAESKAMFA 471
            +D  +  ++ R   +A   +    K  A+  V+ AE+  EAWS L + Y   GL  R  L      M+++  ++   Y+  +  + ++L  ++  +D + V +++LSGLT  Y+  V  LES++   T D+++  ++     ++  NS++E KA+++
Sbjct:   45 EDTTSEVEKKRRDQKALAKICLMIKPSAYAYVRSAENAKEAWSNLQKAYEDKGLSRRLTLLRTLSGMKLQNFKNMELYVSEIMSISQKLADMDAALDDEFVAVIMLSGLTEDYNPMVMALESANIRLTSDFVKAKLLQD---IKYSNSSSE-KALYS 197          
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 53.9 bits (128), Expect = 5.520e-6
Identity = 29/114 (25.44%), Postives = 55/114 (48.25%), Query Frame = 1
Query:   31 RTVHQAWVSLITTCKGVAFDIVQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSS 372
            + V +A   +  +        ++ A+S  EAW  L + Y   GL  R  L    ++ ++        YL ++ ++  +L  +E P+D + V +++LSGLT  YD  +  +E S+
Sbjct:   22 KKVDKALARIALSLTPAVIPYIRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 135          
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Match: UPI00193DC084 (uncharacterized protein LOC105196674 isoform X1 n=3 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193DC084)

HSP 1 Score: 56.2 bits (134), Expect = 5.820e-6
Identity = 38/148 (25.68%), Postives = 69/148 (46.62%), Query Frame = 1
Query:    7 DETRPDQLRTVHQAWVSLITTCKGVAFDIVQGAESPGEAWSKLVQHYHASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVINQFDRLESENSAA 450
            + TR DQ     +A   +    K  A+  V+ AE+  EAW  L + Y   GL  R  L      M+++  ++   Y+  +    ++L  +  P+D + + +++LSGLT  YD  V  LES++   T ++++  ++         N  A
Sbjct:   54 ERTRKDQ-----KALAKICLMVKPCAYPYVRSAENAREAWLNLQKAYEDKGLSRRLSLLRTLAGMKLQNFKNMEIYVNEIMSASQKLADINAPLDDEFLAVIMLSGLTEDYDPMVMALESANIRLTSNFVKAKLLQDIKHTSLSNDRA 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94423.16865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
UPI00103FEA557.760e-1027.10uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
A0A0A9YWZ9_LYGHE1.990e-925.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K5G8_LASNI4.880e-925.00Retrovirus-related pol polyprotein from transposon... [more]
A0A6J2YVB7_SITOR6.120e-827.21uncharacterized protein LOC115890636 n=1 Tax=Sitop... [more]
A0A2H1WMK4_SPOFR1.250e-722.16SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=... [more]
A0A2A4K3A2_HELVI1.320e-724.53CCHC-type domain-containing protein n=1 Tax=Heliot... [more]
UPI001F8D56D12.640e-722.88Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI00193D68985.680e-725.48uncharacterized protein LOC113006278 n=1 Tax=Solen... [more]
A0A2H1VB05_SPOFR5.520e-625.44SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
UPI00193DC0845.820e-625.68uncharacterized protein LOC105196674 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94423contigH-elongata_contig94423:1298..1855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.1
Seed ortholog evalue4e-08
Seed eggNOG ortholog126957.SMAR014841-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931340.4270413-CDS-H-elongata_contig94423:1297..18551622931340.4270413-CDS-H-elongata_contig94423:1297..1855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94423 1298..1855 -
1691679796.4259145-CDS-H-elongata_contig94423:1297..18551691679796.4259145-CDS-H-elongata_contig94423:1297..1855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94423 1298..1855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94423.16865.1prot_H-elongata_contig94423.16865.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94423 1298..1855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94423.16865.1

>prot_H-elongata_contig94423.16865.1 ID=prot_H-elongata_contig94423.16865.1|Name=mRNA_H-elongata_contig94423.16865.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
DDDETRPDQLRTVHQAWVSLITTCKGVAFDIVQGAESPGEAWSKLVQHYH
ASGLKERRRLTVDFYTMRMELGEHPRKYLLRVDQMVKELERVERPVDPKD
VDIVILSGLTPQYDAEVRMLESSSDWPTRDWIERAVINQFDRLESENSAA
ESKAMFAGRGNGHGSNPNPRCQICSRTGHTAQGCKK
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mRNA from alignment at H-elongata_contig94423:1298..1855-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94423.16865.1 ID=mRNA_H-elongata_contig94423.16865.1|Name=mRNA_H-elongata_contig94423.16865.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=558bp|location=Sequence derived from alignment at H-elongata_contig94423:1298..1855- (Himanthalia elongata Himel1 dioecious)
GACGACGACGAAACCCGCCCCGATCAGCTGAGAACTGTGCATCAAGCTTG GGTATCCCTGATAACCACGTGCAAGGGAGTAGCGTTCGACATCGTCCAAG GAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCAGCATTACCAC GCCAGCGGCCTCAAGGAACGACGCCGCCTCACTGTGGACTTCTATACAAT GAGGATGGAACTCGGCGAGCATCCGCGCAAATATTTGCTGCGGGTGGACC AGATGGTCAAGGAACTGGAAAGGGTGGAGCGACCGGTGGACCCGAAAGAT GTGGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTACGACGCCGAGGT TCGAATGCTGGAGAGCTCATCGGACTGGCCCACTCGAGATTGGATAGAAC GAGCCGTCATCAACCAGTTCGATCGCCTGGAGTCTGAAAACTCCGCAGCG GAGAGTAAGGCTATGTTCGCGGGACGCGGCAATGGCCATGGATCGAACCC CAACCCCCGCTGCCAAATTTGCTCGCGTACAGGTCATACTGCTCAGGGGT GCAAGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig94423:1298..1855-

>mRNA_H-elongata_contig94423.16865.1 ID=mRNA_H-elongata_contig94423.16865.1|Name=mRNA_H-elongata_contig94423.16865.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig94423:1298..1855- (Himanthalia elongata Himel1 dioecious)
GACGACGACGAAACCCGCCCCGATCAGCTGAGAACTGTGCATCAAGCTTG
GGTATCCCTGATAACCACGTGCAAGGGAGTAGCGTTCGACATCGTCCAAG
GAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCAGCATTACCAC
GCCAGCGGCCTCAAGGAACGACGCCGCCTCACTGTGGACTTCTATACAAT
GAGGATGGAACTCGGCGAGCATCCGCGCAAATATTTGCTGCGGGTGGACC
AGATGGTCAAGGAACTGGAAAGGGTGGAGCGACCGGTGGACCCGAAAGAT
GTGGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTACGACGCCGAGGT
TCGAATGCTGGAGAGCTCATCGGACTGGCCCACTCGAGATTGGATAGAAC
GAGCCGTCATCAACCAGTTCGATCGCCTGGAGTCTGAAAACTCCGCAGCG
GAGAGTAAGGCTATGTTCGCGGGACGCGGCAATGGCCATGGATCGAACCC
CAACCCCCGCTGCCAAATTTGCTCGCGTACAGGTCATACTGCTCAGGGGT
GCAAGAAGGACGACGACGAAACCCGCCCCGATCAGCTGAGAACTGTGCAT
CAAGCTTGGGTATCCCTGATAACCACGTGCAAGGGAGTAGCGTTCGACAT
CGTCCAAGGAGCTGAGTCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCAGC
ATTACCACGCCAGCGGCCTCAAGGAACGACGCCGCCTCACTGTGGACTTC
TATACAATGAGGATGGAACTCGGCGAGCATCCGCGCAAATATTTGCTGCG
GGTGGACCAGATGGTCAAGGAACTGGAAAGGGTGGAGCGACCGGTGGACC
CGAAAGATGTGGACATCGTAATTCTGAGCGGCCTCACCCCCCAGTACGAC
GCCGAGGTTCGAATGCTGGAGAGCTCATCGGACTGGCCCACTCGAGATTG
GATAGAACGAGCCGTCATCAACCAGTTCGATCGCCTGGAGTCTGAAAACT
CCGCAGCGGAGAGTAAGGCTATGTTCGCGGGACGCGGCAATGGCCATGGA
TCGAACCCCAACCCCCGCTGCCAAATTTGCTCGCGTACAGGTCATACTGC
TCAGGGGTGCAAGAAG
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