mRNA_H-elongata_contig94396.16862.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94396.16862.1
Unique NamemRNA_H-elongata_contig94396.16862.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: A0A6H5L1E0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E0_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.660e-27
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    4 ELVFSQHGKVKRVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKLNGHEISAGHPILVSMADFTRTKAG 207
            ELVFSQHG VKR K+YR+EAG+AKGDGLVT+AKP S DLAV K+NGHEIS G+PI VSMADF RTK+G
Sbjct:  387 ELVFSQHGSVKRSKVYRNEAGEAKGDGLVTFAKPASVDLAVSKMNGHEISVGYPITVSMADFNRTKSG 454
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: A0A7S2GIP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIP3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.270e-13
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    4 ELVFSQHGKVKRVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKLNGHEISAGHPILVSMADFTRTK 201
            +L+FS HG+V+++++YRDE G  KGD LVT+ KP S   A  KL+G+EI+ G  I V  ADF+  +
Sbjct:   24 DLLFSPHGRVRKIRIYRDEGGVPKGDALVTFVKPGSVSGACHKLSGYEIAPGTEIRVEPADFSHKR 89
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: A0A7S2R3X3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3X3_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.580e-13
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    4 ELVFSQHGKVKRVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKLNGHEISAGHPILVSMADFT 192
            +L+FS  G+VKR+K+YRD+AG+ KGD LVTY K  S   A+ K+NGH I+ G  + VS ADF+
Sbjct:  178 DLLFSPFGRVKRIKVYRDDAGKPKGDALVTYVKQGSVASAIQKMNGHTIAPGMKLHVSPADFS 240
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: A0A8J5XGG1_DIALT (RRM domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XGG1_DIALT)

HSP 1 Score: 56.2 bits (134), Expect = 1.490e-7
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    4 ELVFSQHGKVKRVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKLNGHEISAGHPILVSMADF 189
            E  FS+ G+V+RVKLY+D AG+AKGD LV Y K  +A  A+ +L+G ++  G+ + V +ADF
Sbjct:   96 ETHFSKCGEVRRVKLYKDAAGKAKGDALVIYKKEAAASRALAELHGTDLF-GYVLDVVVADF 156
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: A0A2P6NNC0_9EUKA (HIV Tat-specific factor n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NNC0_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 1.850e-7
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   34 KRVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKLNGHEISAGHPILVSMADFTRTK 201
            K+ K+YRDE G+ KGDG+V Y KP S  LA+  L+G +I+ GH I V  A + + +
Sbjct:   96 KKCKVYRDEEGRCKGDGVVHYFKPESVQLAIQLLDGSQITPGHTIAVQEAKYEKKR 151
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: A0A482S7G8_9ARCH (RRM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7G8_9ARCH)

HSP 1 Score: 52.0 bits (123), Expect = 3.180e-6
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    4 ELVFSQHGKVKRVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKL 135
            +++FS HGKVK++K+Y D+ G  KGD LVT+ KP +A +A +K+
Sbjct:  165 DILFSPHGKVKKIKIYVDKDGVKKGDALVTFMKPEAAFIASIKV 208
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: A0A7S3A676_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A676_9RHOD)

HSP 1 Score: 51.6 bits (122), Expect = 6.400e-6
Identity = 32/70 (45.71%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    4 ELVFSQHGKVK--------RVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKLNGHEISAGHPILVSMADF 189
            E  FS+ G VK        +VKLYRDE  Q KGDG+VTY +  S D AV+ L+G E   G  + V  A+F
Sbjct:  189 ENYFSKCGIVKPDPDTGKAKVKLYRDEKDQLKGDGVVTYLQKPSVDNAVLLLDGAEFKPGWKLEVRKAEF 258
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: A0A7S3NHL8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHL8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.210e-5
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   37 RVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKLNGHEISAGHPIL-VSMADFTRTKAG 207
            R+KLY+DE+GQ KGD  V YA   S +LA+  L+G  +  G P L V+ ADF+  + G
Sbjct:  228 RIKLYKDESGQLKGDASVCYAHETSVELALTILDGSSLRYGIPPLKVTRADFSEQRLG 285
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: E1Z524_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z524_CHLVA)

HSP 1 Score: 50.8 bits (120), Expect = 1.220e-5
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   10 VFSQHGKVK-------RVKLYRD-EAGQAKGDGLVTYAKPVSADLAVVKLNGHEISAGHPILVSMA 183
            VFS+ G +K       R+K+YRD E+G+ KGDGL+TY K  S DLAV  L+G  +  G P ++S++
Sbjct:  331 VFSKCGVIKEDLEGKPRIKIYRDRESGRPKGDGLITYLKEPSVDLAVQILDGTPLRYGLPQVMSVS 396
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BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Match: UPI00187A4BB1 (LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like n=1 Tax=Sturnira hondurensis TaxID=192404 RepID=UPI00187A4BB1)

HSP 1 Score: 49.7 bits (117), Expect = 3.130e-5
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   10 VFSQHGKVKRVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKLNGHEISAGHPILVSMA 183
            +FSQ GK+ RVK+ RD++G ++G G V + K   A  AV+ +NG E+S G  + VS A
Sbjct:  210 LFSQFGKMLRVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVS-GRLLFVSQA 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94396.16862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L1E0_9PHAE4.660e-2777.94RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2GIP3_9STRA1.270e-1348.48Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2R3X3_9STRA5.580e-1353.97Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5XGG1_DIALT1.490e-748.39RRM domain-containing protein n=1 Tax=Diacronema l... [more]
A0A2P6NNC0_9EUKA1.850e-746.43HIV Tat-specific factor n=1 Tax=Planoprotostelium ... [more]
A0A482S7G8_9ARCH3.180e-650.00RRM domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S3A676_9RHOD6.400e-645.71Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S3NHL8_9STRA1.210e-546.55Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
E1Z524_CHLVA1.220e-545.45Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
UPI00187A4BB13.130e-544.83LOW QUALITY PROTEIN: polyadenylate-binding protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94396contigH-elongata_contig94396:200..1138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931339.870989-CDS-H-elongata_contig94396:199..3311622931339.870989-CDS-H-elongata_contig94396:199..331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94396 200..331 +
1691679796.1276076-CDS-H-elongata_contig94396:199..3311691679796.1276076-CDS-H-elongata_contig94396:199..331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94396 200..331 +
1622931339.883792-CDS-H-elongata_contig94396:1063..11381622931339.883792-CDS-H-elongata_contig94396:1063..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94396 1064..1138 +
1691679796.1357064-CDS-H-elongata_contig94396:1063..11381691679796.1357064-CDS-H-elongata_contig94396:1063..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94396 1064..1138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94396.16862.1prot_H-elongata_contig94396.16862.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94396 200..1138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94396.16862.1

>prot_H-elongata_contig94396.16862.1 ID=prot_H-elongata_contig94396.16862.1|Name=mRNA_H-elongata_contig94396.16862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
AELVFSQHGKVKRVKLYRDEAGQAKGDGLVTYAKPVSADLAVVKLNGHEI
SAGHPILVSMADFTRTKAG
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mRNA from alignment at H-elongata_contig94396:200..1138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94396.16862.1 ID=mRNA_H-elongata_contig94396.16862.1|Name=mRNA_H-elongata_contig94396.16862.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=939bp|location=Sequence derived from alignment at H-elongata_contig94396:200..1138+ (Himanthalia elongata Himel1 dioecious)
GCAGAGCTGGTGTTCTCTCAGCACGGGAAGGTTAAGAGGGTAAAGCTGTA
TCGGGACGAAGCGGGGCAGGCAAAGGGAGACGGACTGGTGACGTACGCGA
AACCCGTGTCCGCCGATCTCGCCGTCGTAAAGGTAAGAGACAAAAATGCT
CTCTATTTTTAGGTATGTGTATATATAGGGATGGATCGTTATACTATTTT
AGTGGGAGATTTCTAAGGTAGCATGTAGAGGTTGGGCGCTTCGATTTGTG
GAGGGAAATATGGACGAACTTGTCGTCGTTTAGTTGTCTCATCGAACAGC
GGCATCAGACGCGTTGAGGTTGTCTTCGTCCCTGGCTTTGCGGCGCAGCT
ATCCATCCGCTCGTTACATTTTTCGATATTCTGCCGCAACCGGGACATTA
CTGTTGTCTGCCCAACACGCACCGGAAGCGGTAAGACGGGTCGCCCGTTA
TATTTCGGGGCAGTGAGTGAAAAACGCCTCAATCCAGAGGATTGAAACTA
TTTCGAGTGGAACCCCTTGATGCCATGATGCCCTCGCAACCACCATTCAT
GCCTACTCCAGCTTCGAAAGATCGTACGCGTATGCGTGGGGTATCTTCCG
AAACCGTGTGTGTCGGGAACGTAAAGCGGTCTTCCAAAGACCGCTCGCGA
CTTTCTCCCCCTGCCCCGCCCTCCGACCGTGTAGGTCGCCGTGCCGTTCT
AGTATAATAGTGGCTTTTTCGTAGACCTCGATGTACTGCCTCTACCCAAG
CCCCTTCAGGTCTCAATTTTGTTTGATTCATGTATTAGCGCGAGACGACC
TCTTTTTCACTTTTTACTGCCTTGTCTGAGCTCCCTTCTTGTCTTCCCCG
CAATCGCTGCACAGTTGAATGGCCACGAGATTTCTGCCGGACACCCCATC
TTAGTCTCGATGGCGGATTTCACGAGAACGAAGGCGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig94396:200..1138+

>mRNA_H-elongata_contig94396.16862.1 ID=mRNA_H-elongata_contig94396.16862.1|Name=mRNA_H-elongata_contig94396.16862.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig94396:200..1138+ (Himanthalia elongata Himel1 dioecious)
GCAGAGCTGGTGTTCTCTCAGCACGGGAAGGTTAAGAGGGTAAAGCTGTA
TCGGGACGAAGCGGGGCAGGCAAAGGGAGACGGACTGGTGACGTACGCGA
AACCCGTGTCCGCCGATCTCGCCGTCGTAAAGGCAGAGCTGGTGTTCTCT
CAGCACGGGAAGGTTAAGAGGGTAAAGCTGTATCGGGACGAAGCGGGGCA
GGCAAAGGGAGACGGACTGGTGACGTACGCGAAACCCGTGTCCGCCGATC
TCGCCGTCGTAAAGTTGAATGGCCACGAGATTTCTGCCGGACACCCCATC
TTAGTCTCGATGGCGGATTTCACGAGAACGAAGGCGGGTTTGAATGGCCA
CGAGATTTCTGCCGGACACCCCATCTTAGTCTCGATGGCGGATTTCACGA
GAACGAAGGCGGGT
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