mRNA_H-elongata_contig94024.16835.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: D7FQT3_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT3_ECTSI) HSP 1 Score: 368 bits (945), Expect = 8.390e-125 Identity = 182/198 (91.92%), Postives = 191/198 (96.46%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
TTIMAV YDGGVIMGADSRTSTGTYVANRVSDKITSLHD+IYACRSGSAADTQA++DYVRYFLASHS ELGRLP VKTAA + RGLCY NKDRLLAGMIIAGWDPVDGG+VYEIPLGGT++KQKFAIGGSGSTYIYGHVD+AFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVS EYIPGD+LPFGP
Sbjct: 21 TTIMAVQYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAITDYVRYFLASHSVELGRLPLVKTAAKMARGLCYNNKDRLLAGMIIAGWDPVDGGTVYEIPLGGTMMKQKFAIGGSGSTYIYGHVDAAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSCEYIPGDQLPFGP 218
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A836CD01_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD01_9STRA) HSP 1 Score: 345 bits (884), Expect = 1.410e-115 Identity = 168/198 (84.85%), Postives = 185/198 (93.43%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
TTIMA YDGGVIMGADSRTSTGTYVANRVSDKIT+LHDYIYACRSGSAADTQA+SDYVRYFL+SHSAE+GRLP VKTAA+L R +CY NKD LLAGMIIAGWDPV GGSVYEIPLGGT++KQ+FAIGGSGSTYIYGHVD+A+KE MTKEEA+ FVRKAI+HAMARDGSSGGVIR+V IDK GV REYIPG++LP+GP
Sbjct: 19 TTIMACMYDGGVIMGADSRTSTGTYVANRVSDKITALHDYIYACRSGSAADTQAISDYVRYFLSSHSAEVGRLPTVKTAANLARRICYNNKDNLLAGMIIAGWDPVHGGSVYEIPLGGTIMKQQFAIGGSGSTYIYGHVDAAYKEGMTKEEAKIFVRKAIAHAMARDGSSGGVIRIVTIDKDGVEREYIPGNELPYGP 216
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: W7TIP5_9STRA (Proteasome subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIP5_9STRA) HSP 1 Score: 321 bits (822), Expect = 4.030e-106 Identity = 155/198 (78.28%), Postives = 177/198 (89.39%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
TTIMAV +DGGV++GADSRTSTGTYVANRVSDK+T+LH +IY CRSGSAADTQA++DYVRYFLASH+ +LGR PAV TAA L+ L Y+NKD LLAG+II GWDP DGG VY + LGGT+ +QKF+IGGSGSTYIYGHVD AFKENMT+EE Q FV+KAISHAMARDGSSGGVIRMV IDK+GVSRE+IPGDKLP+GP
Sbjct: 23 TTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP 220
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A7S3M7L5_9STRA (Proteasome subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7L5_9STRA) HSP 1 Score: 304 bits (778), Expect = 1.550e-99 Identity = 143/198 (72.22%), Postives = 174/198 (87.88%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
TTIMAVT+DGGV++GADSRTSTG+YVANRVSDKI +HDY++ACRSGSAADTQAVSDYV+Y++ SHS ELGRLP VKT A+L+R +CY NKDR+ AGMI GWDP +GG VYEIPLGGT+++QKFA+GGSGS+YIYG VDS ++E M+KEE + FV+ AISHAMARDGSSGGVIR+VVID++G+ +E + GD LPF P
Sbjct: 18 TTIMAVTFDGGVVLGADSRTSTGSYVANRVSDKIVPIHDYVWACRSGSAADTQAVSDYVKYYINSHSTELGRLPRVKTCANLMRKICYNNKDRMQAGMICGGWDPYEGGQVYEIPLGGTMMQQKFALGGSGSSYIYGLVDSTYREGMSKEECKVFVKTAISHAMARDGSSGGVIRLVVIDQSGIEKEVVLGDNLPFKP 215
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A7S2WTH2_9STRA (Proteasome endopeptidase complex n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTH2_9STRA) HSP 1 Score: 302 bits (773), Expect = 1.020e-98 Identity = 139/198 (70.20%), Postives = 173/198 (87.37%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
TTIMA +DGGV++GADSR STGTY+ANRVSDK+ +LHD I+ CRSGSAADTQA+SDYVRY+L+SH+ E+ R P VKTAA+L R + Y+NKD LLAG+I+ GWDPV+GGSVY IPLGGT++K FAIGGSGSTYIYGHVD+ +KE M++EEAQ FV+K+I+HAMARDGSSGG+IR+V +D GV R+Y+PGD+LP+GP
Sbjct: 22 TTIMACCFDGGVVLGADSRVSTGTYIANRVSDKVAALHDTIFMCRSGSAADTQAISDYVRYWLSSHATEVNRPPTVKTAATLARRIAYENKDALLAGVIVGGWDPVEGGSVYVIPLGGTLMKMPFAIGGSGSTYIYGHVDAQYKEGMSREEAQAFVKKSIAHAMARDGSSGGIIRLVTVDANGVERDYVPGDQLPYGP 219
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: F0W411_9STRA (Proteasome subunit beta n=2 Tax=Albugo TaxID=65356 RepID=F0W411_9STRA) HSP 1 Score: 292 bits (747), Expect = 7.860e-95 Identity = 139/196 (70.92%), Postives = 168/196 (85.71%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 645
T+I+AV +DGGV++GADSRTSTG YVANRVSDK+T LHD IY CRSGSAADTQA+SDYVRYFL+SHS ++G+LP V TAA+L R LCY NKDRLLAG+I+AGWDPV GG VY IP+GG ++KQ FAIGGSGSTYIYG VD+A++ +MT+EE Q FV+K ++HAMARDGSSGGVIR V I K V+RE+ G++LPF
Sbjct: 19 TSIIAVKFDGGVVLGADSRTSTGAYVANRVSDKLTGLHDRIYCCRSGSAADTQALSDYVRYFLSSHSLDVGKLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPVHGGQVYSIPIGGAMVKQNFAIGGSGSTYIYGLVDAAYRPDMTQEECQAFVKKMLAHAMARDGSSGGVIRTVTITKDSVTREFTSGEQLPF 214
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A7S2V2Y9_9STRA (Proteasome endopeptidase complex n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Y9_9STRA) HSP 1 Score: 291 bits (746), Expect = 3.090e-94 Identity = 139/198 (70.20%), Postives = 166/198 (83.84%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
TTIMA Y+GGV++GADSRTSTGTYVANR S+K+T L D I+ CRSGSAADT+AV+DYV+YFL SHS E+G P V++AA LVR LCY+NKD L+AGMII GWDPVDGG VY +PLGGT+++Q AIGGSGSTYIYGHVD+A++ M+KEE FV KAISHAMARDGSSGGVIR+V ID G+ ++Y GDKLP+GP
Sbjct: 49 TTIMACEYEGGVVVGADSRTSTGTYVANRASNKVTYLADNIFGCRSGSAADTEAVTDYVKYFLESHSTEIGGPPRVRSAAHLVRKLCYENKDALMAGMIIGGWDPVDGGQVYSVPLGGTLMRQPVAIGGSGSTYIYGHVDAAYRPGMSKEECHAFVAKAISHAMARDGSSGGVIRLVSIDANGIEKQYFAGDKLPYGP 246
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A7S2HYA4_9STRA (Proteasome subunit beta n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYA4_9STRA) HSP 1 Score: 291 bits (744), Expect = 4.130e-94 Identity = 140/198 (70.71%), Postives = 167/198 (84.34%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPFGP 651
TTIMA+ ++GGV+MGADSR STG+YVANRVSDK+ LHD I+ CRSGSAADTQA++DYV+++LAS + E GR P VKTAA L+R LCY+NKDRLLAG+I+ GWDPVDGGSVY IPLGGT IK FAIGGSGSTYIYG DS FKENMT++EA V+KAISHAMARDGSSGG+IR V + + RE+IPG++LP+GP
Sbjct: 34 TTIMAIPFEGGVVMGADSRVSTGSYVANRVSDKVAQLHDRIWCCRSGSAADTQALTDYVKHYLASLAIETGRRPTVKTAAHLMRRLCYENKDRLLAGVIVGGWDPVDGGSVYNIPLGGTCIKMPFAIGGSGSTYIYGLTDSEFKENMTRDEALTLVKKAISHAMARDGSSGGIIRTVTVTEESNDREFIPGNQLPYGP 231
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: A0A2D4BVR2_PYTIN (Proteasome subunit beta n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BVR2_PYTIN) HSP 1 Score: 290 bits (742), Expect = 4.640e-94 Identity = 140/196 (71.43%), Postives = 168/196 (85.71%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 645
T+I+AV +DGGV++GADSRTSTGTY+ANRVSDK+T LHD IY CRSGSAADTQA+SDYVR+FLASH+ +LGR P V TAA+L R LCY NKDRLLAG+I+AG DPV GG V+ IP+GG +++Q FAIGGSGSTYIYG+VDSA++ NMTKEE Q FV+KA++HAMARDGSSGGVIRMV I V RE++ G +LPF
Sbjct: 20 TSIIAVRFDGGVVLGADSRTSTGTYIANRVSDKLTPLHDRIYCCRSGSAADTQALSDYVRHFLASHAMDLGRRPKVHTAANLFRSLCYNNKDRLLAGIIVAGVDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGYVDSAYRPNMTKEECQSFVKKALAHAMARDGSSGGVIRMVTITADDVVREFVSGTELPF 215
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Match: K3WDU5_GLOUD (Proteasome subunit beta n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WDU5_GLOUD) HSP 1 Score: 290 bits (741), Expect = 6.800e-94 Identity = 137/196 (69.90%), Postives = 167/196 (85.20%), Query Frame = 1
Query: 58 TTIMAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQAVSDYVRYFLASHSAELGRLPAVKTAASLVRGLCYKNKDRLLAGMIIAGWDPVDGGSVYEIPLGGTVIKQKFAIGGSGSTYIYGHVDSAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSREYIPGDKLPF 645
T+I+AV +DGGV++GADSRTSTGTY+ANRVSDK+T LHD I+ CRSGSAADTQA+SDYV+YFL+SH+ +LGRLP V TAA+L R LCY NKDRLLAG+I+AGWDP+ GG V+ +P+GG +++Q FAIGGSGSTYIYG VD+ +K MTKEE Q+FV+KA++HAMARDGSSGGVIR V I K V RE+ GD LPF
Sbjct: 21 TSIIAVRFDGGVVLGADSRTSTGTYIANRVSDKLTPLHDRIFCCRSGSAADTQALSDYVKYFLSSHAVDLGRLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPIKGGQVFSVPIGGAMVEQDFAIGGSGSTYIYGLVDAEYKPGMTKEECQKFVKKALAHAMARDGSSGGVIRTVTITKDEVVREFTSGDALPF 216 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94024.16835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig94024.16835.1 >prot_H-elongata_contig94024.16835.1 ID=prot_H-elongata_contig94024.16835.1|Name=mRNA_H-elongata_contig94024.16835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp MAVTYDGGVIMGADSRTSTGTYVANRVSDKITSLHDYIYACRSGSAADTQback to top mRNA from alignment at H-elongata_contig94024:431..2529- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig94024.16835.1 ID=mRNA_H-elongata_contig94024.16835.1|Name=mRNA_H-elongata_contig94024.16835.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2099bp|location=Sequence derived from alignment at H-elongata_contig94024:431..2529- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig94024:431..2529- >mRNA_H-elongata_contig94024.16835.1 ID=mRNA_H-elongata_contig94024.16835.1|Name=mRNA_H-elongata_contig94024.16835.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig94024:431..2529- (Himanthalia elongata Himel1 dioecious)back to top |