mRNA_H-elongata_contig93629.16795.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93629.16795.1
Unique NamemRNA_H-elongata_contig93629.16795.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93629.16795.1 vs. uniprot
Match: D7FHC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC4_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.500e-12
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 QVLVEELGYLSDEVDDMDPQIAAVVIEKSLPRPRAGM 111
            +VL++ELGY +DEVDDMDPQIAAVVIEKSLPRPRAGM
Sbjct:   84 KVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGM 120
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BLAST of mRNA_H-elongata_contig93629.16795.1 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 QVLVEELGYLSDEVDDMDPQIAAVVIEKSLPRPRAG 108
            +VL++ELGY +DEVDDMDPQIAAVVIEKSLPRPRAG
Sbjct:  188 KVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAG 223
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BLAST of mRNA_H-elongata_contig93629.16795.1 vs. uniprot
Match: A0A7S3MDN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDN6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.210e-7
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    7 LVEELGYLSDEVDDMDPQIAAVVIEKSLPRPRAGM 111
            L +ELGYL +EV+DM+PQIA+VVIE+SL RP+ GM
Sbjct:   76 LKDELGYLPEEVEDMEPQIASVVIERSLTRPKKGM 110
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BLAST of mRNA_H-elongata_contig93629.16795.1 vs. uniprot
Match: A0A835YK24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK24_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.960e-7
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 QVLVEELGYLSDEVDDMDPQIAAVVIEKSLPRPRAGM 111
            + L + L Y  +EV+DM+PQIAA+VIEK LPRPRAGM
Sbjct:    3 KTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGM 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93629.16795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHC4_ECTSI1.500e-1286.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5S7_9PHAE1.340e-1186.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3MDN6_9STRA2.210e-768.57Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835YK24_9STRA2.960e-764.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93629contigH-elongata_contig93629:1979..2101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003980.1
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931332.2354233-CDS-H-elongata_contig93629:1978..21011622931332.2354233-CDS-H-elongata_contig93629:1978..2101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93629 1979..2101 -
1691679793.3947003-CDS-H-elongata_contig93629:1978..21011691679793.3947003-CDS-H-elongata_contig93629:1978..2101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93629 1979..2101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93629.16795.1prot_H-elongata_contig93629.16795.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93629 1979..2101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93629.16795.1

>prot_H-elongata_contig93629.16795.1 ID=prot_H-elongata_contig93629.16795.1|Name=mRNA_H-elongata_contig93629.16795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
QVLVEELGYLSDEVDDMDPQIAAVVIEKSLPRPRAGMSGS*
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mRNA from alignment at H-elongata_contig93629:1979..2101-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93629.16795.1 ID=mRNA_H-elongata_contig93629.16795.1|Name=mRNA_H-elongata_contig93629.16795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig93629:1979..2101- (Himanthalia elongata Himel1 dioecious)
CAGGTACTCGTGGAAGAGTTGGGCTACCTGAGCGATGAGGTCGACGACAT
GGACCCTCAGATAGCAGCGGTCGTCATTGAGAAGTCCCTTCCACGACCGC
GTGCAGGTATGTCAGGGAGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig93629:1979..2101-

>mRNA_H-elongata_contig93629.16795.1 ID=mRNA_H-elongata_contig93629.16795.1|Name=mRNA_H-elongata_contig93629.16795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig93629:1979..2101- (Himanthalia elongata Himel1 dioecious)
CAGGTACTCGTGGAAGAGTTGGGCTACCTGAGCGATGAGGTCGACGACAT
GGACCCTCAGATAGCAGCGGTCGTCATTGAGAAGTCCCTTCCACGACCGC
GTGCAGGTATGTCAGGGAGTTAACAGGTACTCGTGGAAGAGTTGGGCTAC
CTGAGCGATGAGGTCGACGACATGGACCCTCAGATAGCAGCGGTCGTCAT
TGAGAAGTCCCTTCCACGACCGCGTGCAGGTATGTCAGGGAGTTAA
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