mRNA_H-elongata_contig93144.16765.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93144.16765.1
Unique NamemRNA_H-elongata_contig93144.16765.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: D8LE72_ECTSI (FHA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE72_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 8.090e-34
Identity = 70/88 (79.55%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    4 KEFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRKQIAAKLAKIKVGGGGXEXERGD--SGDYGISWGFDEDAV 261
            KEF RLHVGDVIKFGESTRLY +EGPEELRP EYES+NLRNLRL+AGRKQ+AAKLAKIK GG G  X      SG+YGISWGFDEDAV
Sbjct:  176 KEFHRLHVGDVIKFGESTRLYALEGPEELRPAEYESDNLRNLRLDAGRKQLAAKLAKIKAGGAGEXXXXXXXXSGEYGISWGFDEDAV 263
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BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: A0A836CFG3_9STRA (FHA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFG3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.620e-17
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 1 
Query:    4 KEFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRKQIAAKLAK--IKVGGGGXEXERGDSGDYGISWGFDEDAVDED 270
            K++ +L+VGDVIKFGESTRLYV+ GP EL PPEY+SENL+  RL+   K + +KLA+  +KVG    + E     D G SWGFDEDAV+ D
Sbjct:   95 KKYVKLNVGDVIKFGESTRLYVLCGPAELMPPEYDSENLQKYRLK---KLVNSKLAEAGVKVG----KDEADAQQDTGASWGFDEDAVESD 178
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BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: M4B2V9_HYAAE (FHA domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2V9_HYAAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.940e-15
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    4 KEFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRKQIAAKLAKIKVGGGGXEXERGDSGDYGISWGFDEDAVDED-GEMDE 285
            ++F RLH+GDV+ FGESTRLYVV GP EL PPEYES NL  LR + G+K+   + +K        + E     + G+SWGF EDA DE+ GE DE
Sbjct:   98 EDFVRLHIGDVLVFGESTRLYVVCGPAELLPPEYESSNLTKLREKLGKKRSLQEDSK--------QLE-----ERGVSWGFGEDAEDEEEGESDE 179
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BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: A0A1V9ZFC9_9STRA (FHA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFC9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.730e-13
Identity = 43/96 (44.79%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    7 EFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRKQIAAKLAKIKVGGGGXEXERGDSGDYGISWGFDEDAVDEDGEMDETDE 294
            E+  LHVGDV+ FGESTR Y + GP+EL P EY S NL NLR E   K+                 E+ D    GISWGF EDA ++D    E+D+
Sbjct:   96 EYTELHVGDVVVFGESTRFYTILGPQELMPDEYNSTNLENLRAELEEKRATK--------------EKADKACEGISWGFGEDAEEDDNSDQESDD 177
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BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: A0A5D6XZ20_9STRA (FHA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ20_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.750e-13
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    7 EFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRKQIAAKLAKIKVGGGGXEXERGDSGDYGISWGFDEDAVDE 267
            EF RLH+GDV+ FGES+RLY V GP EL P EY+S N+R  R ++ R+Q  AK A+ +        +R ++ D G SWGF EDAVDE
Sbjct:  100 EFVRLHIGDVLAFGESSRLYAVCGPAELLPAEYDSLNVRAFRDKSARRQ-QAKAAQRRE-----RRQRVEAEDDGASWGFREDAVDE 180
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BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: A0A830D3W3_9LAMI (Kanadaptin n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D3W3_9LAMI)

HSP 1 Score: 72.4 bits (176), Expect = 9.660e-13
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   19 LHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRKQIAAKLAKIKVGGGGXEXERGDSGDYGISWGFDEDAVDE 267
            LHVGDVI+FG+STRLY+ +GP +L PPE + ++LR  ++   R+ + A L + KV     E  R D    GISWG  EDAV+E
Sbjct:  168 LHVGDVIRFGQSTRLYIFQGPSDLMPPEADLKSLRKAKVRLDRQDMEASLLRAKV-----EASRAD----GISWGMGEDAVEE 241
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BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: A0A251T4H5_HELAN (Putative SMAD/FHA domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T4H5_HELAN)

HSP 1 Score: 72.4 bits (176), Expect = 9.680e-13
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 RKEFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRKQIAAKLAKIKVGGGGXEXERGDSGDYGISWGFDEDAVDED 270
            +K +  LHVGDV++FG S+RLY+ +GP +L PPE + +++RN+++   R+ + A L + K      E    D    GISWG DEDAV+ED
Sbjct:  202 KKVYVELHVGDVLRFGHSSRLYIFQGPSDLMPPEKDLKSIRNIKMRDERRDMEASLLRAK-----REAALAD----GISWGMDEDAVEED 282
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BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: A0A2U1Q3C4_ARTAN (SMAD/FHA domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1Q3C4_ARTAN)

HSP 1 Score: 71.6 bits (174), Expect = 1.810e-12
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    1 RKEFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRKQIAAKLAKIKVGGGGXEXERGDSGDYGISWGFDEDAVDE 267
            +K +  LHVGDV++FG STRLY+ +GP +L PPE E +++R++R+   R  + A L + K      E    D    GISWG DEDAV+E
Sbjct:  191 KKVYVELHVGDVLRFGHSTRLYIFQGPADLMPPEKEVKSIRSVRMREERSDMEASLLRAK-----REAALAD----GISWGMDEDAVEE 270
[Close]
BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: G4ZWG5_PHYSP (FHA domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZWG5_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 2.370e-12
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    4 KEFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRKQIAAKLAKIKVGGGGXEXERGDSGDYGISWGFDEDAVDEDGEMDETDE 294
            ++F RLH+GDV+ FGESTRLY V GP EL P EYES NL   R +  RK+   +  K +              D G SWGF EDA +E+G+ DE+DE
Sbjct:   98 EQFVRLHIGDVLVFGESTRLYAVCGPPELLPAEYESLNLAKFREKLDRKRQILEKKKQE--------------DRGASWGFGEDAQEEEGD-DESDE 179
[Close]
BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Match: A0A6G0RIF9_9STRA (FHA domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RIF9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.430e-12
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:    4 KEFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRK-QIAAKLAKIKVGGGGXEXERGDSGDYGISWGFDEDAVDEDGEMDETDE 294
            +EF RLH+GDV+ FGESTRLY V GP EL P EYES NL   R +  RK +I  +  +++              D G SWGF +DA +E+GE  + D+
Sbjct:   98 QEFVRLHIGDVLVFGESTRLYAVCGPPELLPAEYESLNLAKFREKLDRKREILEEKKQVE--------------DRGASWGFGDDAEEEEGEQSDEDD 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93144.16765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE72_ECTSI8.090e-3479.55FHA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CFG3_9STRA4.620e-1756.04FHA domain-containing protein n=1 Tax=Tribonema mi... [more]
M4B2V9_HYAAE8.940e-1551.58FHA domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A1V9ZFC9_9STRA2.730e-1344.79FHA domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A5D6XZ20_9STRA2.750e-1351.72FHA domain-containing protein n=1 Tax=Pythium bras... [more]
A0A830D3W3_9LAMI9.660e-1348.19Kanadaptin n=1 Tax=Phtheirospermum japonicum TaxID... [more]
A0A251T4H5_HELAN9.680e-1343.33Putative SMAD/FHA domain-containing protein n=1 Ta... [more]
A0A2U1Q3C4_ARTAN1.810e-1244.94SMAD/FHA domain-containing protein n=1 Tax=Artemis... [more]
G4ZWG5_PHYSP2.370e-1247.42FHA domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6G0RIF9_9STRA2.430e-1244.90FHA domain-containing protein n=5 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93144contigH-elongata_contig93144:136..1772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.8e-29
Seed eggNOG ortholog2880.D8LE72
Preferred nameSLC4A1AP
KEGG koko:K06091,ko:K08956
KEGG Pathwayko04390,ko04391,ko04530,ko05165,map04390,map04391,map04530,map05165
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005886,GO:0016020,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071944,GO:0097159,GO:1901363
EggNOG free text desc.Solute carrier family 4 (anion exchanger), member 1, adaptor protein
EggNOG OGsKOG1881@1,KOG1881@2759
Ec32 ortholog descriptionForkhead-associated (FHA) domain
Ec32 orthologEc-00_001160.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931329.1038313-CDS-H-elongata_contig93144:135..2551622931329.1038313-CDS-H-elongata_contig93144:135..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93144 136..255 +
1691679792.2523322-CDS-H-elongata_contig93144:135..2551691679792.2523322-CDS-H-elongata_contig93144:135..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93144 136..255 +
1622931329.115814-CDS-H-elongata_contig93144:1598..17721622931329.115814-CDS-H-elongata_contig93144:1598..1772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93144 1599..1772 +
1691679792.2737217-CDS-H-elongata_contig93144:1598..17721691679792.2737217-CDS-H-elongata_contig93144:1598..1772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93144 1599..1772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93144.16765.1prot_H-elongata_contig93144.16765.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93144 136..1772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93144.16765.1

>prot_H-elongata_contig93144.16765.1 ID=prot_H-elongata_contig93144.16765.1|Name=mRNA_H-elongata_contig93144.16765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
RKEFRRLHVGDVIKFGESTRLYVVEGPEELRPPEYESENLRNLRLEAGRK
QIAAKLAKIKVGGGGGEGERGDSGDYGISWGFDEDAVDEDGEMDETDE
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mRNA from alignment at H-elongata_contig93144:136..1772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93144.16765.1 ID=mRNA_H-elongata_contig93144.16765.1|Name=mRNA_H-elongata_contig93144.16765.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1637bp|location=Sequence derived from alignment at H-elongata_contig93144:136..1772+ (Himanthalia elongata Himel1 dioecious)
CGCAAGGAATTCCGCCGCCTGCACGTCGGCGACGTGATCAAGTTCGGAGA
ATCGACGCGCCTGTACGTGGTTGAGGGGCCGGAAGAGCTGCGACCGCCGG
AATACGAGAGCGAAAACCTGGTGAGTTACGCGGTGTTGTCCCTTTGCTCT
ATATGTAGACCGGATTGGTTTACTTGGAAGCCAATGTGGAGTGCATAGAG
CCACAAAAACCCGTTTAATGGTTTCTATACAAAAACCCCGGAGGTTTCTT
GGTGATGTCCCGACCTGCTCATGCTGGGAAGGTTTCCAGCCATGACCTCG
AACAGTGGTCTTCGGTTTATTACTTTTTTATTTTTAGAAAACAATTGACA
TTCTCACTAGGTTAAAAATGACAAAAGCGGCAGCATCGAGCAGCCGTCGA
AGAGGCGGTCAGGAAAGCCCGGGAGGTGACGGTCTCTGAACTGAGAGGAC
ACCCGTTCCCAGCACGAGACGGTACCGTCGGGCTTGCCTCCCGCAGATTC
ACAGTAAGGAGTGGTCGTACTGATTATCATACTGGGAAGGGTATCCCCTC
AGTTCGGCTATCGTCTCCTTTCGTCTTTCGGGCTTTCCTGGCCGCCTCTT
CAACGGCTGCCCGATGTTGCCGCTTTTGTAATATGGCGTTATTTTAACCT
AGTGGGAATGGCGTTGTTTTCCAAAAAGAAAGAAAGAAAGAAAATAATAA
TCAATAAACCGAAGACCGCTGTCCTAGGTCTCGCTTCAGCCATGCCGCAG
TCGCCAATGTCGACCGGAAGGGTCCACGTGAAGGAAGGTGCAATACTCAA
TAGTCTCCCCTGCGGGTGACGTGGGATGTAAGCGAGGAGAGATCGCTACA
GTCTCTGCGGGTTCGTGTGTTACCCTGAAGGGAAATGGTCGTCAAGACTG
GAAACTTTCCCAACATGGACAGGTCGAGTTATCACCAGGCAACCTTTGGG
GTATTGGATAAGGACCGTTACGCTTGTTATTGAGGTTCCGTGCTCTCCAC
ATTTGTTCCCATCCAAAGGGGTGCAGTGCTTGAATCTCTGTTGCCGAATC
CCTGTTTCCGATCGCGCTCCGGGGAGAGGGGCGTGTCTTTGCGGTGTGCG
GCATGACGAGGCACGCGTGAAGCAAGGTGTGTGTTTTTTTTGTGGGGGGG
GGGATCGGTGGTTAGCGCGCAAGGCCTTCCCTTCACACAGCATTCTCGTC
CCGGATCGGATGGCCCTCGCCACTCGCCGAAAGAACGCGAGAGTTTGGCG
GTTGTAGACATCAGCAACGAAAGCAAACACGGCCATAAATCCGGTGCTTT
CGATAAGCATGCGGGGGTGTGAACGAGGTGCCGTACGAACTAAATGTAGT
CCAACTGTCTGCATGGCTCTTTCCATCTCCCCCTTTCTCCCTATGTTTCT
CTCTCTCTCTCTCTCTCTCGCGCGCGCTATCTCTTATCATGCGTCTCTCG
CTCTTGCGTACAGCGTAACCTGCGGCTAGAGGCCGGCCGAAAGCAGATTG
CGGCGAAGCTGGCGAAAATCAAAGTGGGTGGTGGCGGCGGAGAAGGGGAA
AGGGGAGACAGCGGCGACTATGGCATCAGCTGGGGCTTCGACGAAGATGC
CGTGGATGAGGATGGCGAAATGGACGAGACGGACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig93144:136..1772+

>mRNA_H-elongata_contig93144.16765.1 ID=mRNA_H-elongata_contig93144.16765.1|Name=mRNA_H-elongata_contig93144.16765.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig93144:136..1772+ (Himanthalia elongata Himel1 dioecious)
CGCAAGGAATTCCGCCGCCTGCACGTCGGCGACGTGATCAAGTTCGGAGA
ATCGACGCGCCTGTACGTGGTTGAGGGGCCGGAAGAGCTGCGACCGCCGG
AATACGAGAGCGAAAACCTGCGCAAGGAATTCCGCCGCCTGCACGTCGGC
GACGTGATCAAGTTCGGAGAATCGACGCGCCTGTACGTGGTTGAGGGGCC
GGAAGAGCTGCGACCGCCGGAATACGAGAGCGAAAACCTGCGTAACCTGC
GGCTAGAGGCCGGCCGAAAGCAGATTGCGGCGAAGCTGGCGAAAATCAAA
GTGGGTGGTGGCGGCGGAGAAGGGGAAAGGGGAGACAGCGGCGACTATGG
CATCAGCTGGGGCTTCGACGAAGATGCCGTGGATGAGGATGGCGAAATGG
ACGAGACGGACGAGCGTAACCTGCGGCTAGAGGCCGGCCGAAAGCAGATT
GCGGCGAAGCTGGCGAAAATCAAAGTGGGTGGTGGCGGCGGAGAAGGGGA
AAGGGGAGACAGCGGCGACTATGGCATCAGCTGGGGCTTCGACGAAGATG
CCGTGGATGAGGATGGCGAAATGGACGAGACGGACGAG
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