mRNA_H-elongata_contig9250.16701.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9250.16701.1
Unique NamemRNA_H-elongata_contig9250.16701.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9250.16701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9250contigH-elongata_contig9250:604..1451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9250.16701.1prot_H-elongata_contig9250.16701.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9250 733..1451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.5728638-UTR-H-elongata_contig9250:603..7321622931322.5728638-UTR-H-elongata_contig9250:603..732Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9250 604..732 +
1691679789.5146859-UTR-H-elongata_contig9250:603..7321691679789.5146859-UTR-H-elongata_contig9250:603..732Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9250 604..732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931322.5864441-CDS-H-elongata_contig9250:732..7661622931322.5864441-CDS-H-elongata_contig9250:732..766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9250 733..766 +
1691679789.5244503-CDS-H-elongata_contig9250:732..7661691679789.5244503-CDS-H-elongata_contig9250:732..766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9250 733..766 +
1622931322.5981593-CDS-H-elongata_contig9250:1293..14511622931322.5981593-CDS-H-elongata_contig9250:1293..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9250 1294..1451 +
1691679789.533575-CDS-H-elongata_contig9250:1293..14511691679789.533575-CDS-H-elongata_contig9250:1293..1451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9250 1294..1451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9250.16701.1

>prot_H-elongata_contig9250.16701.1 ID=prot_H-elongata_contig9250.16701.1|Name=mRNA_H-elongata_contig9250.16701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVFLGGNTPTQAYNESTSTFAEPTIYGRLYFSRSIYDGAESDLGVTERNG
RARDVKRKDLNYLK
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mRNA from alignment at H-elongata_contig9250:604..1451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9250.16701.1 ID=mRNA_H-elongata_contig9250.16701.1|Name=mRNA_H-elongata_contig9250.16701.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=848bp|location=Sequence derived from alignment at H-elongata_contig9250:604..1451+ (Himanthalia elongata Himel1 dioecious)
CTCCCTGACTGATAGGGCTCTACGTCACGCTCATCGTGATGTTTGCGCGC
CGAAATAAATAAATAACTGGGGATTCCTGTCCGAAGCTCGAGTGCTCAAA
TTTATTCCCTGCCCAAAGAAATTTTACTCATGGTCTTCCTTGGCGGCAAC
ACCCCCACCCAAGGTGTGGCATCCTGAGCGTGGTACAATTGATCGTATGA
TGATCGTGGGCAGCCGTTTAATTTCTTCCCCACAGAGTGTGGGATGAAAT
TGAAATGTGGTTAGATAGTTTGTATGATATTCTTTGTTTGCTTTTGAGAC
TGTCAGAAGAGCTTTTTAATTTATAAAAATCGAGGCGAACTTGTAAAACA
TATTTCCCATTTATTGCTTTAAATATTTCATTTGGCTTATTTTAGACTGA
AAAACTAAAAAAAAAAAAGTCGTTAGAGATTCTTAGTTCAATTTGGTTTA
AAAAACCCAGACACCCCTGATCAAAATCATCGCAGTTCAAATTCATAGGG
TTGTGTTTTGGAATCCCAGAGGCACTTCAGCTAGTAGTATGATTTCGATT
CCTATATCAAAATAATTCCGGCCAGTGGTCTGTCAATCCCCACGCGGCTG
CATCGGGTTACATGTGTCTTGTTCATTTTAACACCACCGCTTCTCCTGCA
CAACTCTGTTGTACAACTAACTGCTGCTCTCTGTTTTTAGCATATAACGA
ATCCACATCGACTTTCGCGGAACCAACCATCTACGGCCGGCTGTACTTTT
CCCGCTCCATATACGATGGAGCAGAAAGCGATCTGGGGGTGACGGAGCGA
AATGGAAGAGCACGGGACGTAAAAAGGAAGGACCTCAATTACCTGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig9250:604..1451+

>mRNA_H-elongata_contig9250.16701.1 ID=mRNA_H-elongata_contig9250.16701.1|Name=mRNA_H-elongata_contig9250.16701.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig9250:604..1451+ (Himanthalia elongata Himel1 dioecious)
ATGGTCTTCCTTGGCGGCAACACCCCCACCCAAGATGGTCTTCCTTGGCG
GCAACACCCCCACCCAAGCATATAACGAATCCACATCGACTTTCGCGGAA
CCAACCATCTACGGCCGGCTGTACTTTTCCCGCTCCATATACGATGGAGC
AGAAAGCGATCTGGGGGTGACGGAGCGAAATGGAAGAGCACGGGACGTAA
AAAGGAAGGACCTCAATTACCTGAAGCATATAACGAATCCACATCGACTT
TCGCGGAACCAACCATCTACGGCCGGCTGTACTTTTCCCGCTCCATATAC
GATGGAGCAGAAAGCGATCTGGGGGTGACGGAGCGAAATGGAAGAGCACG
GGACGTAAAAAGGAAGGACCTCAATTACCTGAAG
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