mRNA_H-elongata_contig9163.16622.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9163.16622.1
Unique NamemRNA_H-elongata_contig9163.16622.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: D8LR45_ECTSI (Transducin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR45_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 2.670e-72
Identity = 130/241 (53.94%), Postives = 150/241 (62.24%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSDISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVLAGNGAPAMTQPRKLLGKTLLYNDGGFDLSQDGLWLCAIAKL 723
            FASTHGDHTVKI+ F    VVQ+L+GH RTPWTVKFHPKD+RIVASGCI  EVRVW+  TGRCLH   L+AAIISLSFHPSG +LAIAS   V+LWDY++K  P  AW H+H LRCVRFTP G GIIVGAAN                                                       ++ VWDFSLEA  A + + AMT+ R LL + LLYNDGGFD+S+DGLWLC IA+L
Sbjct:   90 FASTHGDHTVKITDFFRGRVVQSLQGHPRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYNSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAANSXXXXXXXXXQQS------------------------------------------QVTVWDFSLEAAFAEDVSAAMTRERVLLSRALLYNDGGFDVSEDGLWLCTIAEL 288
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BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: A0A6H5KP02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP02_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.430e-62
Identity = 148/368 (40.22%), Postives = 177/368 (48.10%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTL---------------------------------------------LPDNQ--------ISLP---------------------FSPSS------DISRRLA----------------SHRLANATRSLSDTTTVGVT-------------------------------PSQGAPLEVTFRLEVWDFSLEAVLAGNGAPAMTQPRKLLGKTLLYNDGGFDLSQDGLWLCAIAKL 723
            FASTHGDHTVKI+ F    VVQ+L+GH RTPWTVKFHPKD+RIVASGCI  EVRVW+  TGRCLH   L+AAIISLSFHPSG +LAIAS   V+LWDY +K  P  AW H+H LRCVRFTP G GIIVGAAN                                                LP ++        +++P                     + P+S      D+ R L+                +H      R L                                        P    P EV+F L+VWDFSLEA LA + + AMT+ R LL + LLYNDGGFD+S+DGLWLC IA+L
Sbjct:   59 FASTHGDHTVKITDFFRGRVVQSLQGHPRTPWTVKFHPKDARIVASGCIGSEVRVWNASTGRCLHSVTLEAAIISLSFHPSGKMLAIASSLYVYLWDYSSKARPFIAWAHSHTLRCVRFTPGGDGIIVGAANXXXXXXXXXXXXRQEGPRCAAVQPRTTKTSRYARCDGGFISSGTSPKPLPLSRDFGRLCSWLTIPHVRKSRAQQWRPRPHFFFLFLWRPTSRGRYGIDVWRALSLSCGPRNRSPRGLPHSAHSPDQPDRRLDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPPSSRPAEVSFLLQVWDFSLEAALAEDVSTAMTRERVLLSRALLYNDGGFDVSEDGLWLCTIAEL 426
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BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: A0A6A5AMX4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AMX4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.400e-51
Identity = 105/237 (44.30%), Postives = 130/237 (54.85%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSDISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVLAG--NGAPAMTQPRKLLGKTLLYNDGGFDLSQDGLWL 705
            FASTHGDHTVKI  F T  ++QTL GH RTPW+VKFHP + R VASGC+ +++R WDV TG+CL+ A L  AIIS+SFHP G VL IASG CV+ WDY     PR A      LR V F PD   I+VG AN+                                    T  +G  PS     ++T  L +W+F L   +A   + + AM  P  LL   LLYNDGGFD+S+ G +L
Sbjct:   61 FASTHGDHTVKIVCFATGRILQTLVGHPRTPWSVKFHPTNPRYVASGCLGYQIRFWDVVTGKCLYEATLRHAIISVSFHPCGTVLGIASGTCVYTWDYQQHSIPRIAMFSNQTLRSVSFLPDPTKILVGEANEKY----------------------------------TRPLGTVPS-----DLTVTLTLWEFDLAWSVASEPSTSKAMYSPHVLLTHALLYNDGGFDVSKCGQYL 258
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BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: A0A8K1FJQ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJQ7_PYTOL)

HSP 1 Score: 189 bits (479), Expect = 8.840e-51
Identity = 107/242 (44.21%), Postives = 134/242 (55.37%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSDISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVLA---GNGAPAMTQPRKLLGKTLLYNDGGFDLSQDGLWLCAIA 717
            FASTHGDHTVKI    T  ++QTL GH RTPW+VKFHP D R VASGC+ F+VR WD+ TGRCL+V+ L  AIIS+SFHPSGD+LAIASG CV+ WDY +   PR A      LR V F PD   I+VG AN+  +                R +  +                    Q  P ++T  L +WDF     L+        AM   R++L   L+YNDGGFD+S+ G +L   A
Sbjct:  125 FASTHGDHTVKIICMQTGRILQTLVGHPRTPWSVKFHPTDPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHTC-PRIALFSYQTLRSVTFLPDPTKIMVGEANERYMQ---------------RPIGQN-------------------GQSHPADLTVTLTLWDFDPSWALSPQPSENTKAMNNSREILSHALIYNDGGFDISRCGRYLAICA 331
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BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: D0N3A2_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0N3A2_PHYIT)

HSP 1 Score: 187 bits (474), Expect = 1.290e-50
Identity = 107/242 (44.21%), Postives = 131/242 (54.13%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSDISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVLAGNGA---PAMTQPRKLLGKTLLYNDGGFDLSQDGLWLCAIA 717
            FASTHGDHTVKI    T  V+QTL GH RTPW+VKFHP D R VASGC+ F+VR WD+ TGRCL+V+ L  AIIS+SFHPSGD+LAIASG CV+ WDY +   PR A      LR V F PD + I+VG AN+  +                                          Q  P ++T  L +WDF     L+        AM   R +L   L+YNDGGFD+S+ G +L   A
Sbjct:   96 FASTHGDHTVKIICIETGKVIQTLVGHPRTPWSVKFHPTDPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHTC-PRIAMFSYQTLRSVTFLPDPSKIMVGEANERYVRPQ--------------------------------------GQAPPSDLTVTLTMWDFDPSWALSPEPLLTKKAMNNSRVILSHALIYNDGGFDISRCGRYLAICA 298
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BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: A0A0P1API5_PLAHL (WD40 repeat-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1API5_PLAHL)

HSP 1 Score: 187 bits (475), Expect = 2.060e-50
Identity = 107/242 (44.21%), Postives = 131/242 (54.13%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSDISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVLAGNGA---PAMTQPRKLLGKTLLYNDGGFDLSQDGLWLCAIA 717
            FASTHGDHTVKI  F T  V+QTL GH RTPW+VKFHP + R VASGC+ F+VR WD+ TGRCL+V+ L  AIIS+SFHPSGD+LAIASG CV+ WDY +   PR A      LR V F PD   I+VG AN+  +                                          Q  P ++T  L +WDF     L+        AM   R +L   L+YNDGGFD+S+ G +L   A
Sbjct:   96 FASTHGDHTVKIICFETGNVIQTLVGHPRTPWSVKFHPTNPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHTC-PRIAMFSYQTLRSVTFLPDPTKIMVGEANERYVRPQ--------------------------------------GQAPPSDLTVTLTMWDFDPSWALSPEPLLTKKAMNNSRVILSHALIYNDGGFDISRCGRYLAICA 298
[Close]
BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: K3WK65_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WK65_GLOUD)

HSP 1 Score: 187 bits (475), Expect = 2.110e-50
Identity = 110/248 (44.35%), Postives = 136/248 (54.84%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSDISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVLAGNGA---PAMTQPRKLLGKTLLYNDGGFDLSQDGLWL--CAIAKLQK 729
            FASTHGDHTVKI  F T  ++QTL GH RTPW+VKFHP D R VASGC+ F+VR WD+ TGRCL+V+ L  AIIS+SFHPSGD+LAIASG CV+ WDY +  +PR A      LR V F PD   I+VG AN+  L                                          Q  P ++T  L +WDF     LA        AM   + +L   L+YNDGGFD+S+ G +L  CA   L++
Sbjct:   95 FASTHGDHTVKIICFETGRILQTLVGHPRTPWSVKFHPTDPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHT-SPRIAMFSYQTLRSVTFLPDPTKIMVGEANERYLRPQ--------------------------------------GQAPPSDLTVTLTMWDFDPSWSLAPEPLLVKKAMYNSQVVLSHALIYNDGGFDISRCGRYLSICADFSLRQ 303
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BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: G4YU78_PHYSP (Uncharacterized protein n=25 Tax=Phytophthora TaxID=4783 RepID=G4YU78_PHYSP)

HSP 1 Score: 186 bits (472), Expect = 2.460e-50
Identity = 107/242 (44.21%), Postives = 131/242 (54.13%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSDISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVLAGNGA---PAMTQPRKLLGKTLLYNDGGFDLSQDGLWLCAIA 717
            FASTHGDHTVKI    T  V+QTL GH RTPW+VKFHP D R VASGC+ F+VR WD+ TGRCL+V+ L  AIIS+SFHPSGD+LAIASG CV+ WDY +   PR A      LR V F PD + I+VG AN+  +                                          Q  P ++T  L +WDF     L+        AM   R +L   L+YNDGGFD+S+ G +L   A
Sbjct:   96 FASTHGDHTVKIICIETGKVLQTLVGHPRTPWSVKFHPTDPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHTC-PRIAMFSYQTLRSVTFLPDPSKIMVGEANERYVRPQ--------------------------------------GQAPPSDLTVTLTMWDFDPSWALSPEPLLTKKAMNNSRVILSHALIYNDGGFDISRCGRYLAICA 298
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BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: F0XYZ4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYZ4_AURAN)

HSP 1 Score: 189 bits (480), Expect = 4.300e-50
Identity = 105/241 (43.57%), Postives = 138/241 (57.26%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSDISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVLAGNGAPAMTQPRKLLGKTLLYNDGGFDLSQDGLWLCAIAKL 723
            FASTHGDHTVK+  F +  V  TL GH RTPWTVKFHP    +VASGC+ FE RVWD    RC+  A  D AIISLSFHP+GD+LA+A+G  ++LW Y     PR+ + H H +RC+RF P    IIVGAAN+     +   + F       + +       A R+ +     G +PS    +         D  L A +AG+G     +PR +L + L YNDGGFD+S  G +LC+ A+L
Sbjct:  113 FASTHGDHTVKVVDFESGRVAATLVGHPRTPWTVKFHPFLPDVVASGCLGFEARVWDARERRCVRRAEFDRAIISLSFHPAGDILAVAAGTSIYLWHYATGAAPRREFTHPHPIRCLRFLPSRDAIIVGAANNGANEGDAPRITF-------QLMLCDFDVEAARADAGAPAGGGSPSSPTSVRGPTEDAAGDPPLLAPVAGSGRAVSRRPRCVLRRALFYNDGGFDVSPCGRFLCSCAEL 346
[Close]
BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Match: A0A0W8CFI3_PHYNI (Activating molecule in BECN1-regulated autophagy protein 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CFI3_PHYNI)

HSP 1 Score: 187 bits (474), Expect = 1.740e-49
Identity = 107/242 (44.21%), Postives = 131/242 (54.13%), Query Frame = 1 
Query:    1 FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCINFEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDNKLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSDISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVLAGNGA---PAMTQPRKLLGKTLLYNDGGFDLSQDGLWLCAIA 717
            FASTHGDHTVKI    T  V+QTL GH RTPW+VKFHP D R VASGC+ F+VR WD+ TGRCL+V+ L  AIIS+SFHPSGD+LAIASG CV+ WDY +   PR A      LR V F PD + I+VG AN+  +                                          Q  P ++T  L +WDF     L+        AM   R +L   L+YNDGGFD+S+ G +L   A
Sbjct:   96 FASTHGDHTVKIICIETGKVIQTLVGHPRTPWSVKFHPTDPRYVASGCLGFQVRFWDIETGRCLYVSTLRHAIISISFHPSGDILAIASGTCVYTWDYQHTC-PRIAMFSYQTLRSVTFLPDPSKIMVGEANERYVRPQ--------------------------------------GQAPPSDLTVTLTMWDFDPSWALSPEPLLTKKAMNNSRVILSHALIYNDGGFDISRCGRYLAICA 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9163.16622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR45_ECTSI2.670e-7253.94Transducin family protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5KP02_9PHAE2.430e-6240.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A5AMX4_9STRA1.400e-5144.30Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8K1FJQ7_PYTOL8.840e-5144.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0N3A2_PHYIT1.290e-5044.21Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0P1API5_PLAHL2.060e-5044.21WD40 repeat-containing protein n=1 Tax=Plasmopara ... [more]
K3WK65_GLOUD2.110e-5044.35Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
G4YU78_PHYSP2.460e-5044.21Uncharacterized protein n=25 Tax=Phytophthora TaxI... [more]
F0XYZ4_AURAN4.300e-5043.57Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A0W8CFI3_PHYNI1.740e-4944.21Activating molecule in BECN1-regulated autophagy p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9163contigH-elongata_contig9163:5794..8603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.2
Seed ortholog evalue2.6e-63
Seed eggNOG ortholog2880.D8LR45
Preferred nameTPL
KEGG koko:K14558,ko:K14963,ko:K17985
KEGG Pathwayko03008,ko04137,ko04140,ko04934,map03008,map04137,map04140,map04934
GOsGO:0000003,GO:0001101,GO:0003002,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0008150,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009753,GO:0009755,GO:0009790,GO:0009791,GO:0009793,GO:0009867,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009933,GO:0009987,GO:0010014,GO:0010016,GO:0010033,GO:0010051,GO:0010072,GO:0010154,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0022414,GO:0023052,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0032870,GO:0042221,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046983,GO:0048316,GO:0048367,GO:0048507,GO:0048508,GO:0048519,GO:0048523,GO:0048532,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061458,GO:0065007,GO:0070887,GO:0071229,GO:0071310,GO:0071395,GO:0071495,GO:0080090,GO:0090421,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
Ec32 ortholog descriptiontransducin family protein
Ec32 orthologEc-06_004410.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03029,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size987
Cds size987
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9163.16622.1prot_H-elongata_contig9163.16622.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9163 5794..8603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931314.563856-CDS-H-elongata_contig9163:5793..61501622931314.563856-CDS-H-elongata_contig9163:5793..6150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 5794..6150 -
1691679785.6941087-CDS-H-elongata_contig9163:5793..61501691679785.6941087-CDS-H-elongata_contig9163:5793..6150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 5794..6150 -
1622931314.5809352-CDS-H-elongata_contig9163:6598..67241622931314.5809352-CDS-H-elongata_contig9163:6598..6724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 6599..6724 -
1691679785.717351-CDS-H-elongata_contig9163:6598..67241691679785.717351-CDS-H-elongata_contig9163:6598..6724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 6599..6724 -
1622931314.5957212-CDS-H-elongata_contig9163:6915..70191622931314.5957212-CDS-H-elongata_contig9163:6915..7019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 6916..7019 -
1691679785.7280362-CDS-H-elongata_contig9163:6915..70191691679785.7280362-CDS-H-elongata_contig9163:6915..7019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 6916..7019 -
1622931314.612728-CDS-H-elongata_contig9163:7252..73551622931314.612728-CDS-H-elongata_contig9163:7252..7355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 7253..7355 -
1691679785.7379878-CDS-H-elongata_contig9163:7252..73551691679785.7379878-CDS-H-elongata_contig9163:7252..7355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 7253..7355 -
1622931314.6293426-CDS-H-elongata_contig9163:7642..77831622931314.6293426-CDS-H-elongata_contig9163:7642..7783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 7643..7783 -
1691679785.75644-CDS-H-elongata_contig9163:7642..77831691679785.75644-CDS-H-elongata_contig9163:7642..7783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 7643..7783 -
1622931314.6455429-CDS-H-elongata_contig9163:8447..86031622931314.6455429-CDS-H-elongata_contig9163:8447..8603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 8448..8603 -
1691679785.7708251-CDS-H-elongata_contig9163:8447..86031691679785.7708251-CDS-H-elongata_contig9163:8447..8603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9163 8448..8603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9163.16622.1

>prot_H-elongata_contig9163.16622.1 ID=prot_H-elongata_contig9163.16622.1|Name=mRNA_H-elongata_contig9163.16622.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp
FASTHGDHTVKISTFLTKTVVQTLRGHRRTPWTVKFHPKDSRIVASGCIN
FEVRVWDVPTGRCLHVARLDAAIISLSFHPSGDVLAIASGQCVHLWDYDN
KLNPRKAWQHAHILRCVRFTPDGAGIIVGAANDTLLPDNQISLPFSPSSD
ISRRLASHRLANATRSLSDTTTVGVTPSQGAPLEVTFRLEVWDFSLEAVL
AGNGAPAMTQPRKLLGKTLLYNDGGFDLSQDGLWLCAIAKLQKVVGCPPL
AMWGSTDISASKIRYGADATDIAKQPPSASSGWIDGSAASRESSQLERND
LVEEKPTEYELPASAVEVVGRKVDESEQR
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mRNA from alignment at H-elongata_contig9163:5794..8603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9163.16622.1 ID=mRNA_H-elongata_contig9163.16622.1|Name=mRNA_H-elongata_contig9163.16622.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2810bp|location=Sequence derived from alignment at H-elongata_contig9163:5794..8603- (Himanthalia elongata Himel1 dioecious)
TTTGCCTCAACCCACGGTGATCACACAGTCAAGATCAGCACCTTCTTGAC
GAAAACTGTAGTCCAAACACTCCGCGGACACCGCAGAACGCCCTGGACGG
TTAAGTTTCATCCCAAAGACTCGCGCATTGTAGCGTCGGGATGTATCAAT
TTCGAGGTAAATTACTAATTCTAGTTGTTGTTGTTGCTGTTTGGGGGGCG
GGGGGGGGGGGGGGGGGGGCGGTTTCCCGTTCTGGGGGGTTTGAAAGAGA
AGGATGTGTGCGGGAGGGTCAATNNNNNNNNNNGGGGGGTGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGCGGCGGAATTCCGCTCTTGGCGTGT
TCTAAATGAAAGATGCCTGTACGAGGTCTCAAATTTAGTGTTGTATTTTC
GTAAACCCATCCAAACGGTTACTGTATTCAAATGATAAAAATGATAAAAA
GTCGTCGGCGGGTACGCAGACAGAAAATTTTCCAAACAGTTTGGAAAACC
TCGTGGATGCTTGTTTCTGGGCGACGACAATCAGTACGGTTCCTCGTACG
ATCGTGTTAAAGCTAGTCTGTTGTCTCTATCAAGTACTATCCCCAGCCCT
CTCTCCTCGTTGGAATGATGACAAATCACGACGTCTGCCACGTATGATAC
GGCTGTTGTTGGTGTGCATTAACAGTCACGCAAACGGCTCGCTGCTTATT
GGTAATCGAGTTACACACGCACTCCGCTATTTTTCGTCTTTGTGTGCGCT
AAGGTTTTCGAACCGGCGTCTGAAACAATAATAATTTACGCGTACCTTTT
GTTTCGTTGGATGGGATCAGGTGAGGGTCTGGGACGTGCCGACGGGACGA
TGCTTGCACGTGGCGAGGCTTGATGCAGCGATCATCTCCCTCAGCTTCCA
TCCCTCCGGTGACGTGCTTGCAATCGCTAGCGGCCAGTGCGTGCACCTTT
GGGACTACGATGTGAGCTCGCGCGCGCCGAATGCGTGTCTCGGAGCAAGC
AAGATTTGTAAACGCTCCAAATGTTCCCCTCTTTTGGTTATTCTCTTTCA
GTGCTTCTAGCGATGGCGTTGATTCCCCGATGGTGGCACCAAGTGATGAG
GCCGAAAAACACGCTGCGTATTCTGTCGTGCTCTTCCTTCCCCGCTTCCT
TCGCCACCCTTTTGTTTTACCCCCCAACCCAGAATGCCTCATGTCTCGAT
CGATCCGCTCTTCTGCTTTCCCTGCTCGCTTGCTTGAGATGCTCTCAGAA
CAAGCTTAACCCTCGAAAAGCGTGGCAACACGCGCATATTCTTCGCTGCG
TTCGCTTCACCCCAGACGGGGCCGGAATAATCGTGGGAGCGGCCAACGAC
AGTACCACCACGACACGGGCGCAACCCGTGAGTGTGTCGTGACTCTGGTG
TATCATCCTTCGGCGAACAAGGAGCGAATGTTAAACGGCGCGGTCGTCGA
ACATATTCGGAAAAACAGAATTTCTAATTGGCTCCTCTTGGCCAGTCACT
CAAACTTCCGTGTATTTTGCGTGTATTGGTACAAGTCTCGAGGTGACTAC
GGTTACGGGGTGCACGCATTAATGCGAGGGGAAGCCTTACTACCTGATAA
CCAAATCTCGCTACCTTTTTCACCGTCGTCGGACATCTCGCGTCGCCTCG
CATCGCATCGCCTTGCCAATGCTACCAGATCGCTCTCCGTTTGGACGTAC
TTGACGACGAGTCGCTCTTTGCAAAGCTAGGCTTGTCAAACGAGCCTCCG
ACAATCTCCTCATCTACGTTATATAATTATTCACCCTCTTTCTTGCTAAT
GCATTATTTCTGTTACGAAAGTGAGGACCCCTATTAGTCATTAGCCATTA
GCAATTAGCCATACCGCCTCCCTCTACAGGATACGACAACGGTCGGGGTC
ACACCTTCGCAGGGAGCGCCGTTGGAAGTGACATTCCGACTAGAGGTTTG
GGACTTCAGTCTGGAGGCAGTTCTCGCCGGAAACGGCGCTCCTGCCATGA
CCCAGGTGCGAGTATTGGCGCAGCAAGGCTGCAAAAGGCGTGGGCGAAAC
GTTGGCCAATTAGATTTCAAGCGGCTGGCGGTGCTTCCGGACCTCGTGCG
CGATGTGCTTAACACAAATCTTACACTCGCCAACATGGCAAGCTTTACGT
CGGCGGGACACTATCCGTACGTTTTCCGCGTGGAGCCGTAAGTGTAGTTA
TGAGGTATCCGTAGATAAGCGAATGTTTTCAGGAGTAAATACCAGCCCTC
GAGGAATCGAAGGCATACAAATGCAGAAGTTCGTTCCATCGAGGGTGAAA
AAGCGATCGTGGCATCTCAACGCAGCGACTTGATATATATTTCTCCCCTT
GGCTGTTACTTTCTCACACCGTATTCCGTATCTTTACATAATCACGTGTC
TCCTCATTTTTCGACCGAATCACGTACTCGGAATTCCCCTTCCCGCTCTC
CAGCCACGGAAGCTGTTGGGGAAAACCCTCCTGTACAACGATGGTGGTTT
TGATCTGTCCCAGGATGGACTCTGGCTATGCGCGATCGCTAAGCTGCAGA
AGGTCGTTGGTTGCCCCCCTCTCGCGATGTGGGGCTCGACGGATATTTCC
GCATCAAAGATACGCTACGGAGCTGATGCCACAGACATCGCCAAGCAACC
TCCTTCTGCATCCTCAGGGTGGATAGATGGAAGTGCAGCGTCCCGGGAGT
CATCGCAGCTCGAAAGGAATGACTTGGTGGAGGAAAAACCGACTGAGTAT
GAGCTTCCTGCTTCGGCAGTCGAAGTCGTCGGGAGAAAGGTAGATGAGAG
TGAGCAGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig9163:5794..8603-

>mRNA_H-elongata_contig9163.16622.1 ID=mRNA_H-elongata_contig9163.16622.1|Name=mRNA_H-elongata_contig9163.16622.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at H-elongata_contig9163:5794..8603- (Himanthalia elongata Himel1 dioecious)
TTTGCCTCAACCCACGGTGATCACACAGTCAAGATCAGCACCTTCTTGAC
GAAAACTGTAGTCCAAACACTCCGCGGACACCGCAGAACGCCCTGGACGG
TTAAGTTTCATCCCAAAGACTCGCGCATTGTAGCGTCGGGATGTATCAAT
TTCGAGTTTGCCTCAACCCACGGTGATCACACAGTCAAGATCAGCACCTT
CTTGACGAAAACTGTAGTCCAAACACTCCGCGGACACCGCAGAACGCCCT
GGACGGTTAAGTTTCATCCCAAAGACTCGCGCATTGTAGCGTCGGGATGT
ATCAATTTCGAGGTGAGGGTCTGGGACGTGCCGACGGGACGATGCTTGCA
CGTGGCGAGGCTTGATGCAGCGATCATCTCCCTCAGCTTCCATCCCTCCG
GTGACGTGCTTGCAATCGCTAGCGGCCAGTGCGTGCACCTTTGGGACTAC
GATGTGAGGGTCTGGGACGTGCCGACGGGACGATGCTTGCACGTGGCGAG
GCTTGATGCAGCGATCATCTCCCTCAGCTTCCATCCCTCCGGTGACGTGC
TTGCAATCGCTAGCGGCCAGTGCGTGCACCTTTGGGACTACGATAACAAG
CTTAACCCTCGAAAAGCGTGGCAACACGCGCATATTCTTCGCTGCGTTCG
CTTCACCCCAGACGGGGCCGGAATAATCGTGGGAGCGGCCAACGACAAAC
AAGCTTAACCCTCGAAAAGCGTGGCAACACGCGCATATTCTTCGCTGCGT
TCGCTTCACCCCAGACGGGGCCGGAATAATCGTGGGAGCGGCCAACGACA
CCTTACTACCTGATAACCAAATCTCGCTACCTTTTTCACCGTCGTCGGAC
ATCTCGCGTCGCCTCGCATCGCATCGCCTTGCCAATGCTACCAGATCGCT
CTCCCCTTACTACCTGATAACCAAATCTCGCTACCTTTTTCACCGTCGTC
GGACATCTCGCGTCGCCTCGCATCGCATCGCCTTGCCAATGCTACCAGAT
CGCTCTCCGATACGACAACGGTCGGGGTCACACCTTCGCAGGGAGCGCCG
TTGGAAGTGACATTCCGACTAGAGGTTTGGGACTTCAGTCTGGAGGCAGT
TCTCGCCGGAAACGGCGCTCCTGCCATGACCCAGGATACGACAACGGTCG
GGGTCACACCTTCGCAGGGAGCGCCGTTGGAAGTGACATTCCGACTAGAG
GTTTGGGACTTCAGTCTGGAGGCAGTTCTCGCCGGAAACGGCGCTCCTGC
CATGACCCAGCCACGGAAGCTGTTGGGGAAAACCCTCCTGTACAACGATG
GTGGTTTTGATCTGTCCCAGGATGGACTCTGGCTATGCGCGATCGCTAAG
CTGCAGAAGGTCGTTGGTTGCCCCCCTCTCGCGATGTGGGGCTCGACGGA
TATTTCCGCATCAAAGATACGCTACGGAGCTGATGCCACAGACATCGCCA
AGCAACCTCCTTCTGCATCCTCAGGGTGGATAGATGGAAGTGCAGCGTCC
CGGGAGTCATCGCAGCTCGAAAGGAATGACTTGGTGGAGGAAAAACCGAC
TGAGTATGAGCTTCCTGCTTCGGCAGTCGAAGTCGTCGGGAGAAAGGTAG
ATGAGAGTGAGCAGCGGCCACGGAAGCTGTTGGGGAAAACCCTCCTGTAC
AACGATGGTGGTTTTGATCTGTCCCAGGATGGACTCTGGCTATGCGCGAT
CGCTAAGCTGCAGAAGGTCGTTGGTTGCCCCCCTCTCGCGATGTGGGGCT
CGACGGATATTTCCGCATCAAAGATACGCTACGGAGCTGATGCCACAGAC
ATCGCCAAGCAACCTCCTTCTGCATCCTCAGGGTGGATAGATGGAAGTGC
AGCGTCCCGGGAGTCATCGCAGCTCGAAAGGAATGACTTGGTGGAGGAAA
AACCGACTGAGTATGAGCTTCCTGCTTCGGCAGTCGAAGTCGTCGGGAGA
AAGGTAGATGAGAGTGAGCAGCGG
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