mRNA_H-elongata_contig90035.16494.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig90035.16494.1
Unique NamemRNA_H-elongata_contig90035.16494.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig90035.16494.1 vs. uniprot
Match: D8LDG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG0_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.020e-14
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 QQIHLVAWTAPSGQVRVTFAACRESAPSDHHHESAAFRHTYWRSKKSQFMAIKENYVMHRIE 186
            Q IHL AWTAPSGQVRV+ A CRE AP  HHH +AAF     +SKKSQ + + E+ VMHR+E
Sbjct: 1398 QSIHLAAWTAPSGQVRVSAARCREVAPLQHHHLAAAFLEQCRKSKKSQRLQLLEHRVMHRLE 1459
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BLAST of mRNA_H-elongata_contig90035.16494.1 vs. uniprot
Match: A0A6H5JCY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.010e-14
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 QQIHLVAWTAPSGQVRVTFAACRESAPSDHHHESAAFRHTYWRSKKSQFMAIKENYVMHRIE 186
            Q IHL AWTAPSGQ+RV+ A CRE AP  HHH +AAF      SKKSQ + + E+ VMHR+E
Sbjct: 1035 QSIHLAAWTAPSGQIRVSAARCREVAPWQHHHLAAAFPGQCRGSKKSQRLQLLEHRVMHRVE 1096
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90035.16494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDG0_ECTSI1.020e-1461.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY4_9PHAE9.010e-1459.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90035contigH-elongata_contig90035:1047..1232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931300.6268082-CDS-H-elongata_contig90035:1046..12321622931300.6268082-CDS-H-elongata_contig90035:1046..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90035 1047..1232 -
1691679779.7557588-CDS-H-elongata_contig90035:1046..12321691679779.7557588-CDS-H-elongata_contig90035:1046..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig90035 1047..1232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90035.16494.1prot_H-elongata_contig90035.16494.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig90035 1047..1232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig90035.16494.1

>prot_H-elongata_contig90035.16494.1 ID=prot_H-elongata_contig90035.16494.1|Name=mRNA_H-elongata_contig90035.16494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
QQIHLVAWTAPSGQVRVTFAACRESAPSDHHHESAAFRHTYWRSKKSQFM
AIKENYVMHRIE
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mRNA from alignment at H-elongata_contig90035:1047..1232-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig90035.16494.1 ID=mRNA_H-elongata_contig90035.16494.1|Name=mRNA_H-elongata_contig90035.16494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig90035:1047..1232- (Himanthalia elongata Himel1 dioecious)
CAGCAAATTCATTTAGTGGCGTGGACGGCTCCAAGCGGTCAAGTTCGAGT
TACGTTTGCGGCGTGCCGAGAATCCGCGCCGTCGGATCACCATCATGAAT
CGGCCGCGTTTCGCCATACCTACTGGAGGTCGAAGAAGTCGCAGTTCATG
GCGATCAAGGAAAACTATGTCATGCATCGCATCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig90035:1047..1232-

>mRNA_H-elongata_contig90035.16494.1 ID=mRNA_H-elongata_contig90035.16494.1|Name=mRNA_H-elongata_contig90035.16494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig90035:1047..1232- (Himanthalia elongata Himel1 dioecious)
CAGCAAATTCATTTAGTGGCGTGGACGGCTCCAAGCGGTCAAGTTCGAGT
TACGTTTGCGGCGTGCCGAGAATCCGCGCCGTCGGATCACCATCATGAAT
CGGCCGCGTTTCGCCATACCTACTGGAGGTCGAAGAAGTCGCAGTTCATG
GCGATCAAGGAAAACTATGTCATGCATCGCATCGAGCAGCAAATTCATTT
AGTGGCGTGGACGGCTCCAAGCGGTCAAGTTCGAGTTACGTTTGCGGCGT
GCCGAGAATCCGCGCCGTCGGATCACCATCATGAATCGGCCGCGTTTCGC
CATACCTACTGGAGGTCGAAGAAGTCGCAGTTCATGGCGATCAAGGAAAA
CTATGTCATGCATCGCATCGAG
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