mRNA_H-elongata_contig8999.16487.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: D7FR27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR27_ECTSI) HSP 1 Score: 542 bits (1396), Expect = 5.790e-176 Identity = 400/913 (43.81%), Postives = 488/913 (53.45%), Query Frame = 1
Query: 4 AVQVRNGRLDIDVPSDDNARQCARLLKEHPSSIKSLDLSKGVVTSAGAGAIAKALKGNTALKHLGLHENAIGDAGVVYIGKAVECNLGCALTSLNLSATGITVVGLSNLVQGVSRLPGLHTLCLSDNNLAQEAGHQISNLFKSSSSLHTLVASGNYLGDRGVAALSGAFCYLSPARVISLDLSGNGIGDLGVQWLCRGISTLCHTQIQPGGLAEGSGRGKSGSWGGVRIFRVRGNNITHLGATYLANLLSEEQCARELRELDLSMNTITAIGFRPLAQSLRECRELMRLDVAGCRLGPAGLEAAAELIAASGMKLSGVDLTPKVEVADVVLGDRGGLAVALRQSLQRLADSLRFANTVVELKLGAFVRADHDAAASIQETLQEHRNRLEAPSSLISTFVTVPRRGGEERRKREDAGPAPENRAARGTSVERPRAGLERVKVGSERSKAGIVERTKRAAGPGAQGRSPSAGSSSTPPFAPSSSLPRATNKAERGGGGRVESVKSGSGRYASQSTAPPQRGVVT-----TASEIFAAHDKAV---RPALHRRMHQGEELDSIDGFSSP--PPRASPMTA-------------------------------RAGGATRSKDVD-----GGVENIADIVSKVMGDTEGIAHG-ESPPPVAPSSRQCRENRWEEDAKKFSDS-SSPPGKIP-----------------LSPYGVRKVAMVAGGENEEETGNNKLVGESSVRDVGDHG--EPELSAGMSSLLLVNERRPRSKSHSQGMS-MELSNSGSSGQQ--LVTVAKAGRMVAPLGAREVEKETRRVEIRLQ---------------------------NEMNKALNVMRSEMKAIDREALMARVAMEKHIKTSLQRLVERFATIERRLARLERGAGDHKRAALEA 2451
A+ VRNGR+DI+VP+D++A+ CAR+LK+ SS+KS+DL +G+VTSAGAGA+AKALKGN+ LGC L S++LSATGITVVGLSNLVQGVSRLP LHT+CL+DNNLAQEAG Q+SNL K+S+SLHT++A GNYLGDRG+AAL GAFCYL PARV+SLD+SGNGIGDLG QWLC+GIS LC Q + +GS G+R R+RGNNITH GA LA +LSE +CAR+LRELDLSMNTITA GFRPLA SLR CREL+RLDVAGCRLGP G++A A+LIAASG KL+ V LTPK E AD VLGDRGGLAVALRQSLQRLADSL FA +VVE + + G ARGT +ERP+AGLER K G ER Q T P++ VV T + AA D+A A HRR+HQGEELDSI+GF+ P+ P T +A G S ++ G VE+IAD+VSKVMGDT +A G +PPPVAPS+ W+ D + S+ GK + P V V+ + EPE++AGM+SL L + R S SQG + +E+S LVTV A RM+APL A+EVEKET+++EIR+Q NEMN AL MRSEM+AIDRE LMARVAMEK +KT ++RL+ER +ERR ++LER D KR ALEA
Sbjct: 3 ALDVRNGRVDIEVPTDEDAKHCARVLKDQHSSLKSIDLRRGLVTSAGAGALAKALKGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGCVLASVDLSATGITVVGLSNLVQGVSRLPNLHTVCLNDNNLAQEAGLQLSNLLKASASLHTVLAGGNYLGDRGLAALCGAFCYLKPARVLSLDVSGNGIGDLGAQWLCKGISALCRNQ-----------QDAAGSGSGIRDLRLRGNNITHTGAKELATILSEGRCARDLRELDLSMNTITADGFRPLAVSLRGCRELVRLDVAGCRLGPGGVDAVADLIAASGPKLTAVVLTPKAEFADRVLGDRGGLAVALRQSLQRLADSLPFAGSVVE---------------------------------------GIGKSG------------------ARGTGIERPKAGLERQKAAG-----GTAER---------QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGKPETGQPRQPVVAGQHHKTTTATLAARDRAAVDAHAAPHRRLHQGEELDSIEGFTEQRQAPKLMPPTRELLASXXXXXXXXXXXXXNTGFYGDXXXXXKKAAGPGPSAGLEASASGGVVESIADVVSKVMGDTAAVADGLVTPPPVAPST-------WDWDTNSGGPAGSAATGKXXXXXXXXXXXXXXXXXXXMVPSSVGPVSXXXXXXXXXXXXXXXXXXXXASFSTAPESSSEPEVAAGMTSLALSDGSRSGLNSSSQGTTAIEVSXXXXXXXXXXLVTVEDASRMLAPLVAQEVEKETKKIEIRMQRRVPSSVVCAAAKRVRLALLKHLGAWQNEMNSALRTMRSEMEAIDREGLMARVAMEKRLKTGIKRLLERIDHLERRFSKLERE--DRKRLALEA 824
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: UPI0003290E76 (ribonuclease inhibitor n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI0003290E76) HSP 1 Score: 66.6 bits (161), Expect = 1.170e-7 Identity = 88/322 (27.33%), Postives = 125/322 (38.82%), Query Frame = 1
Query: 49 DDNARQCARLLKEHPSSIKSLDLSKGVVTSAGAGAIAKALKGNTALKHLGLHENAIGDAGVVYIGKA-VECNL--------GCALTSLN---LSATGITVVGLSNLVQGVSRL--PGLHTLC--------------LSDNNLAQEAGHQISNLFKSSSSLHTLVASGNYLGDRGVAALSGAF----CYLSPARV-----------------------ISLDLSGNGIGDLGVQWLCRGISTLCHTQIQPGGLAEGSGRGKSGSWGGVRIFRVRGNNITHLGATYLANLLSEEQCARELRELDLSMNTITAIGFRPLAQSLRE 849
D R L++ +++ L L +T+AG A+A AL+ + + LGL N +G+AGV + + VEC GC +T+ N LS L L G +RL GL LC L + ++ E + L ++ SL L +GN LGD G L + C L V + L LSGN +GD GVQ LC+G+ PG +R+ + +T G LA LL LRELDLS N + G L SL++
Sbjct: 121 DAGLRLLCEGLQDPQCNLEKLKLQYCDLTAAGCEALAAALRTKASFRELGLSNNDVGEAGVRALCRCLVECASPLEKLRLEGCGVTAANCEDLSRVVAAKASLQELDLGENRLGDAGLAALCPALLGPDCSLRILWLWECDITAEGCRDVCRLLRAKDSLRELSLAGNQLGDEGARLLCESLREPGCRLESLWVKSCGFTAACCPHFGSMLGHNKSLLELQLSGNALGDAGVQTLCQGLGL-------PGSA--------------LRVLWLGDCEVTDRGCAALAALLLS---CPGLRELDLSNNPMGDPGVLQLVGSLQQ 418
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: UPI000BBDB044 (protein NLRC5-like n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBDB044) HSP 1 Score: 66.2 bits (160), Expect = 3.040e-7 Identity = 80/300 (26.67%), Postives = 139/300 (46.33%), Query Frame = 1
Query: 76 LLKEHPSSIKSLDLSKGVVTSAGAGAIAKALKGNTA--LKHLGLHENAIGDAGVVYIGKAVECNLGCALTSLNLSATGITVVGLSNLVQGVSRLPGLHTLCLSDNNLAQEAGHQISNLFKSSSSL-------HTLVASGNYLGDRGVAALSGAFCYLSPARVISLDLSGNGIGDLGVQWLCRGI----STLCHTQIQPGGLAEGSGRGKSGSWGGVRIFRVRG---NNITHLGATYLANLLSEEQCARELRELDLSMNTITAIGFRPLAQSLRECRELMRLDVAGCRLGPAGLEAAAELI 927
LL+ +++ L +S +T G A+A ALK N + L L L N GD GV I + ++ C L +L L + ++L + + G++ L L++ +L+ + H + + K S+ L L + N + ++G L A C +P+ +I LDLSGN +G+ G+Q LC+ + S L + Q+ + E S S + G N + + G L +LL C L +++LS I+ G+ LA +++ + M LD+ G G G+ +L+
Sbjct: 1586 LLRNPCCNLQILSVSDNNITEKGYAALASALKSNPSSHLVELDLRGNDPGDTGVKLITE-LQKEPNCKLKTLRLLKDPVGEEICTSLTEAL----GINPLGLTELDLSGKI-HSDTEMKKLSAMLVDVHCRTKILKLNNNRITEKGWVDLFSALCS-NPSHLIELDLSGNKLGNSGMQKLCKLLKNDHSKLLNLQLCDCNITEISACLTSALKSNPSHLKELGLSKNKVGNSGVMQLIDLLQSSNCF--LEKINLSFCNISEEGYEALASAMKSISQRMELDLRGNDPGDTGVGLLTDLL 1876
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: A0A6P3RKU6_PTEVA (Ribonuclease inhibitor n=6 Tax=Pteropodinae TaxID=77225 RepID=A0A6P3RKU6_PTEVA) HSP 1 Score: 63.5 bits (153), Expect = 1.000e-6 Identity = 75/295 (25.42%), Postives = 120/295 (40.68%), Query Frame = 1
Query: 130 VTSAGAGAIAKALKGNTALKHLGLHENAIGDAGVVYIGKAVECNL---------GCALTSLNLSATGITVVGLSNLVQ-----------GVSRL-PGL-------HTLCLSDNNLAQEAGHQISNLFKSSSSLHTLVASGNYLGDRGVAALSGAF----CYLSP-----------------------ARVISLDLSGNGIGDLGVQWLCRGISTLCHTQIQPGGLAEGSGRGKSGSWGGVRIFRVRGNNITHLGATYLANLLSEEQCARELRELDLSMNTITAIGFRPLAQSLRE 849
+T+A +A L+ K L + N +GDAGV + + + + GC LT + G V ++L G+++L PGL TL L + ++ + + K+ SL L +GN +GD G L + C+L R++ L LSGN +GD GVQ LC+G+ QPG + +R+ + +T+ G + LA+LL L ELDLS N ++ +G LA+SL++
Sbjct: 149 LTAASCEPLAAVLRAKREFKELMVSNNDLGDAGVRALCRGLADSASPLESLRLEGCNLTPASCQDLGSIVASKASLCTLELGDNKLGDAGIAKLCPGLLSPSSQLRTLWLWECDITASGCRDLCRVLKAKGSLKELSVAGNAVGDEGAQLLCESLLAPSCHLESLWAKSCGFTAACCQHFSAMLARNTRLLELQLSGNSLGDAGVQQLCQGLG-------QPGAV--------------LRVLCLGDCEVTNNGCSSLASLLLANH---SLCELDLSNNCMSDMGVLQLAESLQQ 419
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: A0A7S1E255_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E255_HEMAN) HSP 1 Score: 63.2 bits (152), Expect = 1.410e-6 Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 1
Query: 76 LLKEHPSSIKSLDLSKGVVTSAGAGAIAKALKGNTALKHLGLHENAIGDAGVVYIGKAVECNLGCALTSLNLSATGITVVGLSNLVQGVSRLPGLHTLC---LSDNNLAQEAGHQISNLFKSSSSLHTLVASGNYLGDRGVAALSGAFCYLSPARVISLDLSGNGIGDLGVQWLCRGIST 606
++ E ++ SL L + S G A++ L+ TAL HL L N IGD G + + + + +L SL L I+ VG+ L +SRLP TL L+ N L +E ++ + ++ + TL GN + D G A+S A L V ++ L N I D+GV+ LC + T
Sbjct: 80 MVVEKCPNLVSLYLERNEFRSEGVEALSPKLQTCTALGHLSLKRNYIGDKGAMLLAQLMSKWRNKSLKSLYLGYCNISAVGVKELCGVLSRLPLAMTLTRLDLTANFLKEEGAAALAKVLGANRRIKTLHLCGNAIEDGGCKAISEA---LKDTAVETVGLGQNQITDVGVRHLCEVLKT 256
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: UPI001C6668ED (ribonuclease inhibitor-like n=1 Tax=Chrysemys picta bellii TaxID=8478 RepID=UPI001C6668ED) HSP 1 Score: 62.0 bits (149), Expect = 2.650e-6 Identity = 72/265 (27.17%), Postives = 108/265 (40.75%), Query Frame = 1
Query: 7 VQVRNGRLDIDVPSDDNARQCARLLKE---HPS-SIKSLDLSKGVVTSAGAGAIAKALKGNTALKHLGLHENAIGDAGVVYIGKAV-------------ECNLGCA--------------LTSLNLSATGITVVGLSNLVQGVSRLPG--LHTLCLSDNNLAQEAGHQISNLFKSSSSLHTLVASGNYLGDRGVAALSGAF--------------CYLSPA-------------RVISLDLSGNGIGDLGVQWLCRGISTLCHTQ 621
++ R ++D+ +D RLL E HP+ ++ LDL +T A G +A L N +L L L N++G+AGV + K + +C L A LT L LS + G+ L +G+ P + L L D L ++N+ ++S +L L SGN LGD GV L C+L+ A + LDL N +GD GV+ LC G+ C+ Q
Sbjct: 24 LKARESLTELDLGYNDLGNAGVRLLCEGLKHPTCKLQKLDLWDCELTGACCGDLANVLSSNQSLTELKLCSNSLGNAGVRLLCKRLTHPNCKLQQLGLRDCELTGACCGDLAAVLSTSQSLTELKLSGNSLGNAGVQLLCKGLKH-PNCKMQRLDLRDCELTSACCGDLANVLRTSQTLTELKLSGNNLGDAGVQILCEGLKHLNCKLWRLDLSSCFLTDACCGDLAIVLRTNQNLTELDLGYNNLGDAGVKLLCEGLKQNCNLQ 287
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: A0A8C3F979_CHRPI (NACHT domain-containing protein n=6 Tax=Testudinoidea TaxID=8486 RepID=A0A8C3F979_CHRPI) HSP 1 Score: 60.1 bits (144), Expect = 1.960e-5 Identity = 87/316 (27.53%), Postives = 134/316 (42.41%), Query Frame = 1
Query: 7 VQVRNGRLDIDVPSDDNARQCARLLKE---HPS-SIKSLDLSKGVVTSAGAGAIAKALKGNTALKHLGLHENAIGDAGVVYIGKAVECNLGCALTSLNLSATGITVVGLSNLVQGVSRLPGLHTLCLSDNNLAQEAGHQI--SNLFKSSSSLHTLVASGNYLGDRGVAALSGAFC-----YLSPARVIS-LDLSGNGIGDLGVQWLCRGISTLCHTQIQPGGLAEGSGRGKSGSWGGVRIFRVRGNNITHLGATYLANLLSEEQCARELRELDLSMNTITAIGFRPLAQSLRECRELMRLDVA-----GCRLGPAG 903
++ R ++D+ +D RLL E HP+ ++ LDL +T A G +A L N +L L L N++G+AGV + K + + C L L L +T +L +S L L LS N+L AG Q+ L + + L D L+ A C L ++ ++ L LSGN +GD GVQ LC G+ L + ++QP +E + +T LA +L Q L ELDL N + G + L + L++ L L++ GC + AG
Sbjct: 606 LKARESLTELDLGYNDLGNAGVRLLCEGLKHPTCKLQKLDLWDCELTGACCGDLANVLSSNQSLTELKLCSNSLGNAGVRLLCKRLT-HPNCKLQQLGLRDCELTGACCGDLAAVLSTSQSLTELKLSGNSLGN-AGVQLLCKGLKHPNCKMQRL--------DLRDCELTSACCGDLANVLRTSQTLTELKLSGNNLGDAGVQILCEGLKHL-NCKLQPSTTSE--------------TLVLNSCFLTDACCGDLAIVLRTNQ---NLTELDLGYNNLGDAGVKLLCEGLKQNCNLQSLNLRKSATWGCGVTAAG 893
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: A0A671KXX9_9TELE (Uncharacterized protein n=3 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671KXX9_9TELE) HSP 1 Score: 57.0 bits (136), Expect = 6.470e-5 Identity = 78/297 (26.26%), Postives = 128/297 (43.10%), Query Frame = 1
Query: 79 LKEHPSSIKSLDLSKGVVTSAGAGAIAKALKGNTA-LKHLGLHENAIGDAGVVYIGKAVECNLGCALTSLNLSATGITVVGLSNLVQGVSRLPGLHTLCLSDNNLAQ-EAG----HQISNLFKSSS-SLHTLVASGNYLGDRGVAALSGAFCYLSPARVISLDLSGNGIGDLGVQWLCRGISTLCHTQIQPGGLAEGSGRGKSGSWGGVRIFRVRGNNITHLGATYLANLLSEEQCARELRELDLSMNTITAIGFRPLAQSLRECRELMRLDVAGCRLGPAGLEAAAELIAASGMKL 948
LKE+ ++ L LS +T G A+A AL+ N + L L L N G +GV + ++ + C L +L + Q V+ + G + L L + NL++ E G +QI+ L + L+TL + N + ++G AAL+ F +P+ +I LDLSGN +G+ G++ +C LL QC+ L++L LS +IT G++ L SL+ L+ LD+ G G +G++ L+ KL
Sbjct: 12 LKEN-CKLEKLCLSDCSITEEGYKALASALRSNPSHLIELDLTGNDPGPSGVKQLNDLLQ-DPNCQLKTLRFLSPAA-----DEACQFVTGIVGKNPLLLRELNLSKCELGDTRVNQIATLLRDRHCKLNTLTLNNNSITEKGFAALTSVFIS-NPSNLIELDLSGNKLGNTGIEMICV--------------------------------------------------LLRNPQCS--LKKLKLSDCSITEEGYKTLTSSLKSNSNLIELDLTGNDPGKSGVQGLINLLRGGCCKL 248
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: A0A7J8H5H1_ROUAE (Ribonuclease inhibitor n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8H5H1_ROUAE) HSP 1 Score: 55.8 bits (133), Expect = 7.140e-5 Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 529 RVISLDLSGNGIGDLGVQWLCRGISTLCHTQIQPGGLAEGSGRGKSGSWGGVRIFRVRGNNITHLGATYLANLLSEEQCARELRELDLSMNTITAIGFRPLAQSLRE 849
R++ L LSGNG+GD GVQ LCRG+ +PG +R+ + +T+ G + LA+LL L ELDLS N ++ +G LA+SL++
Sbjct: 109 RLLELQLSGNGLGDAGVQQLCRGLG-------RPGAA--------------LRVLCLGDCEVTNSGCSSLASLLLANH---SLCELDLSNNCMSDVGVLQLAESLQQ 191
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Match: A0A8C1AGL9_CYPCA (Uncharacterized protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1AGL9_CYPCA) HSP 1 Score: 57.8 bits (138), Expect = 9.230e-5 Identity = 76/281 (27.05%), Postives = 120/281 (42.70%), Query Frame = 1
Query: 115 LSKGVVTSAGAGAIAKALKGNTA-LKHLGLHENAIGDAGVVYIGKAVECNLGCALTSLN-LSATGITVVGLSNLVQGVSRLPGLHTLCLSDNNLAQEAGHQISNLFKSSS-SLHTLVASGNYLGDRGVAALSGAFCYLSPARVISLDLSGNGIGDLGVQWLCRGISTLCHTQIQPGGLAEGSGRGKSGSWGGVRIFRVRGNNITHLGATYLANLLSEEQCARELRELDLSMNTITAIGFRPLAQSLRECRELMRLDVAGCRLGPAGLEAAAELIAASGMKL 948
LS +T G A+A AL+ N + L L L N G +GV + ++ + C L +L L A + G S L L L LS L +QI+ L + +LHTL + N + G AAL+ F +P+++I LDLSGN +G+ G+Q +C +LL + QC+ L++L LS ++T G++ L SL+ L+ LD+ G G +G++ +L+ + KL
Sbjct: 11 LSDCSITEEGYKALASALRSNPSHLIELDLRGNDPGQSGVKELDDLLQ-DPDCQLKTLRFLGAAAEEACQFVTGIVGKSPLL-LKELNLSGCELGDTRMNQITALLQDKHCTLHTLQLNNNSITAEGFAALTSVFIS-NPSKLIELDLSGNKVGNTGIQKIC--------------------------------------------------DLLKKPQCS--LKKLKLSDCSVTEEGYKTLTSSLKSNSNLIELDLTGNDPGKSGVQGLIDLLRSECCKL 236 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8999.16487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8999.16487.1 >prot_H-elongata_contig8999.16487.1 ID=prot_H-elongata_contig8999.16487.1|Name=mRNA_H-elongata_contig8999.16487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=857bp MAVQVRNGRLDIDVPSDDNARQCARLLKEHPSSIKSLDLSKGVVTSAGAGback to top mRNA from alignment at H-elongata_contig8999:2002..9529+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8999.16487.1 ID=mRNA_H-elongata_contig8999.16487.1|Name=mRNA_H-elongata_contig8999.16487.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7528bp|location=Sequence derived from alignment at H-elongata_contig8999:2002..9529+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8999:2002..9529+ >mRNA_H-elongata_contig8999.16487.1 ID=mRNA_H-elongata_contig8999.16487.1|Name=mRNA_H-elongata_contig8999.16487.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5142bp|location=Sequence derived from alignment at H-elongata_contig8999:2002..9529+ (Himanthalia elongata Himel1 dioecious)back to top |