mRNA_H-elongata_contig8997.16485.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8997.16485.1
Unique NamemRNA_H-elongata_contig8997.16485.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8997.16485.1 vs. uniprot
Match: D7FUA9_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUA9_ECTSI)

HSP 1 Score: 265 bits (676), Expect = 1.280e-78
Identity = 167/328 (50.91%), Postives = 209/328 (63.72%), Query Frame = 1 
Query:    1 EEKEDTGEKIMYLCLEKAIDMEALEKNGMPMDWSGVLEGEEVVKVFYPKKDKDFDVNEYVKRMGYDRDRDVDKVDKTMFSGLTEEMKKNLAENLPRSSYTEKDDMIPVVSGPKVSPVIDTGVLGV------QASAFPLEPGHISPANDGVGNDDGNGRG--EASPSSTGDVDPGGSPRGNGEVAG---------------DASPDIPLEPNPAVEASRPPRELTARQREVASGLRDTYKRLLGSGMFQR-NPDGTSAEIPDMDELAREYEEDGFMPKDSDFSDEELRKNEAMSMSVMSG----GLDDEF---DFDANDPAVRAAFGLE 891
            EE EDTGEK++YLCLEK  DMEAL  N MP DW GVLEGEE + V+YP KDKDFDV EYVKRMGYDR+RD+ KVDK MFS LT EMK+NL   LP+SS+T+KDDMIPV++ PKVSPVIDTGVLG+      +  A P E  +++   DG  ++ G G    +A     G  + G +P   G  AG               DA  ++P++   A        ELT RQREVA+GLR TY++L+ +GM Q  NPDGT A++PDM+E+AR YE +GFM K+ DFS+EEL K   M            LDD+    D D +DPA R+AFGL+
Sbjct:  277 EEMEDTGEKVLYLCLEKVADMEALAANSMPQDWVGVLEGEEPLNVYYPDKDKDFDVGEYVKRMGYDRERDIGKVDKAMFSDLTAEMKENLQTTLPKSSFTDKDDMIPVMADPKVSPVIDTGVLGLPTPPPREPEAVPDETVNVNA--DGTVSNGGGGAAAIDAEVVREGSWEAGFAPDLGGAAAGGGPDDSAYSPAGFRADADFNVPMKDGEAG-------ELTERQREVAAGLRRTYEKLVKTGMVQETNPDGTPAKMPDMEEMARAYETEGFMFKEGDFSEEELSKYMDMXXXXXXXXAGLALDDDLPGGDIDLDDPATRSAFGLD 595
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8997.16485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUA9_ECTSI1.280e-7850.91CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8997contigH-elongata_contig8997:5756..9107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.3
Seed ortholog evalue2.8e-64
Seed eggNOG ortholog2880.D7FUA9
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-03_000920.1
Exons7
Model size1372
Cds size891
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931299.2045555-UTR-H-elongata_contig8997:5755..61651622931299.2045555-UTR-H-elongata_contig8997:5755..6165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8997 5756..6165 -
1691679779.0726025-UTR-H-elongata_contig8997:5755..61651691679779.0726025-UTR-H-elongata_contig8997:5755..6165Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8997 5756..6165 -
1622931299.2227664-UTR-H-elongata_contig8997:6183..62241622931299.2227664-UTR-H-elongata_contig8997:6183..6224Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8997 6184..6224 -
1691679779.0858545-UTR-H-elongata_contig8997:6183..62241691679779.0858545-UTR-H-elongata_contig8997:6183..6224Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8997 6184..6224 -
1622931299.3438983-UTR-H-elongata_contig8997:9077..91071622931299.3438983-UTR-H-elongata_contig8997:9077..9107Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8997 9078..9107 -
1691679779.1601126-UTR-H-elongata_contig8997:9077..91071691679779.1601126-UTR-H-elongata_contig8997:9077..9107Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8997 9078..9107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931299.2366116-CDS-H-elongata_contig8997:6224..64251622931299.2366116-CDS-H-elongata_contig8997:6224..6425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 6225..6425 -
1691679779.0954502-CDS-H-elongata_contig8997:6224..64251691679779.0954502-CDS-H-elongata_contig8997:6224..6425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 6225..6425 -
1622931299.2535744-CDS-H-elongata_contig8997:6846..69631622931299.2535744-CDS-H-elongata_contig8997:6846..6963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 6847..6963 -
1691679779.106626-CDS-H-elongata_contig8997:6846..69631691679779.106626-CDS-H-elongata_contig8997:6846..6963Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 6847..6963 -
1622931299.2668736-CDS-H-elongata_contig8997:7226..74901622931299.2668736-CDS-H-elongata_contig8997:7226..7490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 7227..7490 -
1691679779.1167054-CDS-H-elongata_contig8997:7226..74901691679779.1167054-CDS-H-elongata_contig8997:7226..7490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 7227..7490 -
1622931299.2829804-CDS-H-elongata_contig8997:8040..81601622931299.2829804-CDS-H-elongata_contig8997:8040..8160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 8041..8160 -
1691679779.1290245-CDS-H-elongata_contig8997:8040..81601691679779.1290245-CDS-H-elongata_contig8997:8040..8160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 8041..8160 -
1622931299.303929-CDS-H-elongata_contig8997:8404..84671622931299.303929-CDS-H-elongata_contig8997:8404..8467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 8405..8467 -
1691679779.1379843-CDS-H-elongata_contig8997:8404..84671691679779.1379843-CDS-H-elongata_contig8997:8404..8467Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 8405..8467 -
1622931299.3238823-CDS-H-elongata_contig8997:8951..90771622931299.3238823-CDS-H-elongata_contig8997:8951..9077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 8952..9077 -
1691679779.1515417-CDS-H-elongata_contig8997:8951..90771691679779.1515417-CDS-H-elongata_contig8997:8951..9077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8997 8952..9077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8997.16485.1prot_H-elongata_contig8997.16485.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8997 6225..9077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8997.16485.1

>prot_H-elongata_contig8997.16485.1 ID=prot_H-elongata_contig8997.16485.1|Name=mRNA_H-elongata_contig8997.16485.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=297bp
MYLCLEKAIDMEALEKNGMPMDWSGVLEGEEVVKVFYPKKDKDFDVNEYV
KRMGYDRDRDVDKVDKTMFSGLTEEMKKNLAENLPRSSYTEKDDMIPVVS
GPKVSPVIDTGVLGVQASAFPLEPGHISPANDGVGNDDGNGRGEASPSST
GDVDPGGSPRGNGEVAGDASPDIPLEPNPAVEASRPPRELTARQREVASG
LRDTYKRLLGSGMFQRNPDGTSAEIPDMDELAREYEEDGFMPKDSDFSDE
ELRKNEAMSMSVMSGGLDDEFDFDANDPAVRAAFGLEGEKKGNGKP*
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mRNA from alignment at H-elongata_contig8997:5756..9107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8997.16485.1 ID=mRNA_H-elongata_contig8997.16485.1|Name=mRNA_H-elongata_contig8997.16485.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3352bp|location=Sequence derived from alignment at H-elongata_contig8997:5756..9107- (Himanthalia elongata Himel1 dioecious)
GAGGAGAAAGAGGACACCGGCGAAAAGATCATGTACCTCTGTCTGGAAAA
GGCGATCGATATGGAAGCGCTCGAGAAGAACGGAATGCCGATGGATTGGT
CTGGGGTTCTGGAAGGGGAAGAAGTCGTGAAGGTCTTCTACCCGAAAAAA
GATAAGGTATATTGCAACCTATAAAAGGTACAAGGTAACAAGGCACATTA
CGGTTCCTTTTCGAGGTTAACCCCTATGGAACTCGATCTGTGTTTTTAGA
TACTAAATTCAATTTAAAACTTGAAATCCAGTTCCAAAAGGGTTAAGACC
CGCCCCCGCCCAGCCCCCCCGGAAACTAGAGTACCGCGGGAGCTCTCCGG
GGATGCAGCTTCCCTACGCGTCCCCAAGACGTGATCCTCCAGCATCAGAG
GGTGGCTCGCGCCCTTCCGAACCGTGCCAACGATAATTGCGGCTTCCAAA
AGGCCGCGAGGGTGCATAGCGGTATCCTGAGGGATACGTTTCTTGCGTTT
TTCGTGGCTGCGGCGCGCACCACACCGAGCCGGGGCGAGGCTTGAGAAAA
ACGGCGAGAAGGGGAGTAATAATTTTTCGAGAAAAAATAAATTTATGAGC
TCTGGGTTTCGTTTGCCTTGCGACCGTCGTGGGATGGCAGGACTTTGACG
TGAACGAGTACGTCAAGAGGATGGGATATGACAGAGACAGGGACGTCGAC
AAAGTGAGGAAGGAGGACCGAACTATGAAAAACCGTTGGTGTATCAGGAA
CACATATCACGGAAAAAGAGTCCATCCGTGGTACCCATTCCTTAATCACC
AAGCGCTAAATAACACGCGAGAGTAGTAGTGGTCACTGGATGCAGTAGAG
AGGGTCGTACGCTGGGCATCTCTCCCCCCCCTCCCCGCAACGAAAGAAAA
TAGGAGAAAACCGCCTATTTGTTCCCATGGTGCAAACGCCTCGACAGGTG
GACAAAACAATGTTCTCCGGGCTGACCGAAGAAATGAAGAAGAACCTGGC
GGAAAATCTTCCCAGGTCTTCCTACACGGAGAAGGATGATATGATCCCGG
TCGTCTCCGGCCCGAAGGTGTGATCGACGATAACGATGACGTCAGCACGA
ATAGATGGAAGCGGGGAGGAGGGCTCGCTCACTTCGGCGAAGTTTGGACT
TGGTACTTTGAACAAATATTTGGTGATCTCACCGGTAGCCCCACTGGTGC
CAGGCAAACCCAAGTATTTTCGTCTTTGCCACCAACAAATGAAGGTTGTC
AGTATCTTCCGTTGAGACCGTTCGGTGGAGGTGTGTACCTAAGCAATCTA
CGAGTTTTGTTTTCTAACCAAGAAAACCCCTGGTTAGAGGTTGGAACCCC
CCGCGCCCCCCCCCCCCCCCAAACACTTTCACAAGGGAAATACTCGAGGC
CACAAATTATTCTTGCCTCCAGGGTACGTAACCCGGGTTATTTGTCGTCT
ATTAAAAGTCCTCCCCGAACGGGATCCCGAACCGAACGCGAAACCGGAGA
CGGAGACTCCTAGGGAACGCCTCGCAGATTGTCTACCCCCTGTAACGGAA
CGACTCGCTCAATTATGGTCACGCGTCTCGTACCCATCCCCAACATCCAC
CGTACCCGCCCAAGTAGGTCTCTCCTGTGATCGATACGGGGGTCCTGGGC
GTGCAGGCGTCAGCATTTCCTCTCGAGCCGGGACATATAAGCCCCGCGAA
CGATGGTGTGGGTAACGATGACGGTAACGGTCGCGGCGAAGCATCACCGT
CGTCCACGGGAGACGTCGATCCCGGAGGATCGCCGCGGGGGAATGGAGAA
GTCGCCGGGGACGCATCTCCGGACATTCCTCTCGAACCGAATCCGGCCGT
CGAGGCTTCGCGGCCGCCCCGCGAGCTGACGGTGAGAGGCCAAGGGTCGC
CACGACTCTTGATTATTTATCTCTTCTATCGCGGTTGTACCACCGACGAC
GCGTGTTCTTTTACCACCGCCAGTCCAGGTGTCCTTGGCCATGCGTACAT
GCGTACGTGGGTGGGTACATCTCCGCCGACGATGTTTCCGTCAGGTGGAC
GTCGGTGCCGTGGCGAGACTCTTGTTGTTTTTATGCGACCTGGCGTGCGC
TGTGTTTGTTTTTCGTGTATATATGCGTGTGTCCTCGTCACAAGGCGAGG
CAACGGGAGGTAGCGTCCGGGCTGAGGGACACCTACAAGAGGCTGCTCGG
GTCCGGCATGTTTCAGCGTAACCCTGACGGAACGTCCGCCGAAATTCCTG
ACATGGACGAGGTGCGCCCCCCGTTCGTTGGTTTTCTTTTGATAAGATTT
CACCCGACGCCCTTTCAGGTGTCAAGCCGTCCTCGTGATACGAAGCGCCC
GCCCCTTAGCCGCCATAGGATAAGACCCTCGATTCATTACGCCATCGGCT
TCGCCCTCCGATCCCCACCGGGCGCAATCCATTCGAAAACCCCTCAAATC
TCTCTTGTCTTTGACGAGCCGGAAAATTCATGTTATAAATGTATAATTCT
ATTGGTATAATTTACATGTTTATTCACAAGGGACAGCGACAAAAAAGTCG
ACACGTTTTTCGTAAAATCGTTGAAAAAAAAGCGTGCAATGGTGGCTCCA
GTCAGTCAACAGTCAACCTGCTGCCCGATGGGAAATCTAATCTGACCTGA
CCTTGTATGGCCTTCGGGGGCCTTGCCGGCAGCTTGCGAGGGAGTACGAA
GAGGACGGGTTCATGCCCAAGGACAGCGATTTTTCCGACGAGGAGCTTCG
CAAGAACGAGGCGATGTCGATGTCGGTCATGTCGGGCGGGTTGGATGATG
AATTTGACTTCGACGCCAACGACCCGGCCGTTCGAGCGGCTTTCGGTCTA
GAAGGAGAGAAAAAGGGGAATGGAAAGCCGTAGCGCTCACGGCCATCATA
ATATCAATAATATTAATAATAATAACAATAATAATGTGGGTACCAGTATC
GGACACACCTATTTAATAGTACAACAGTCCCGCTCAGATTTTGGGCCGTT
ACACAGTCGTCACACCGGGATCTTCCAGGAACCTTCCGTCGGCATATTTC
ATACCCTGGTTCCTGATATCAGCGCTTATCATGCTCTCGTCCCAGATTAC
AGTAAGAGTGCTTTATCCTCAAGTGGTGTGTGTTGTATGTTGTATGTTGG
TATCACATTCAGTTTGGATGAAGATTGGTGCTAAACAAATGATGGATGGA
GATAAAATAGCTCAGTTTTGTTTGCCGTTCTATTTTGTTTATGCTTATAA
AAAGTAGTCTACGTTGTTAGTGAAGCTTGAGTAGTAGTCCTGTTAATCAG
GCCACACCCTCCCCTGCCTCGAATATTACGTTACGTCTCGTCTCTGGCCT
AC
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Coding sequence (CDS) from alignment at H-elongata_contig8997:5756..9107-

>mRNA_H-elongata_contig8997.16485.1 ID=mRNA_H-elongata_contig8997.16485.1|Name=mRNA_H-elongata_contig8997.16485.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1782bp|location=Sequence derived from alignment at H-elongata_contig8997:5756..9107- (Himanthalia elongata Himel1 dioecious)
ATGTACCTCTGTCTGGAAAAGGCGATCGATATGGAAGCGCTCGAGAAGAA
CGGAATGCCGATGGATTGGTCTGGGGTTCTGGAAGGGGAAGAAGTCGTGA
AGGTCTTCTACCCGAAAAAAGATAAGATGTACCTCTGTCTGGAAAAGGCG
ATCGATATGGAAGCGCTCGAGAAGAACGGAATGCCGATGGATTGGTCTGG
GGTTCTGGAAGGGGAAGAAGTCGTGAAGGTCTTCTACCCGAAAAAAGATA
AGGACTTTGACGTGAACGAGTACGTCAAGAGGATGGGATATGACAGAGAC
AGGGACGTCGACAAAGACTTTGACGTGAACGAGTACGTCAAGAGGATGGG
ATATGACAGAGACAGGGACGTCGACAAAGTGGACAAAACAATGTTCTCCG
GGCTGACCGAAGAAATGAAGAAGAACCTGGCGGAAAATCTTCCCAGGTCT
TCCTACACGGAGAAGGATGATATGATCCCGGTCGTCTCCGGCCCGAAGGT
GGACAAAACAATGTTCTCCGGGCTGACCGAAGAAATGAAGAAGAACCTGG
CGGAAAATCTTCCCAGGTCTTCCTACACGGAGAAGGATGATATGATCCCG
GTCGTCTCCGGCCCGAAGGTCTCTCCTGTGATCGATACGGGGGTCCTGGG
CGTGCAGGCGTCAGCATTTCCTCTCGAGCCGGGACATATAAGCCCCGCGA
ACGATGGTGTGGGTAACGATGACGGTAACGGTCGCGGCGAAGCATCACCG
TCGTCCACGGGAGACGTCGATCCCGGAGGATCGCCGCGGGGGAATGGAGA
AGTCGCCGGGGACGCATCTCCGGACATTCCTCTCGAACCGAATCCGGCCG
TCGAGGCTTCGCGGCCGCCCCGCGAGCTGACGGTCTCTCCTGTGATCGAT
ACGGGGGTCCTGGGCGTGCAGGCGTCAGCATTTCCTCTCGAGCCGGGACA
TATAAGCCCCGCGAACGATGGTGTGGGTAACGATGACGGTAACGGTCGCG
GCGAAGCATCACCGTCGTCCACGGGAGACGTCGATCCCGGAGGATCGCCG
CGGGGGAATGGAGAAGTCGCCGGGGACGCATCTCCGGACATTCCTCTCGA
ACCGAATCCGGCCGTCGAGGCTTCGCGGCCGCCCCGCGAGCTGACGGCGA
GGCAACGGGAGGTAGCGTCCGGGCTGAGGGACACCTACAAGAGGCTGCTC
GGGTCCGGCATGTTTCAGCGTAACCCTGACGGAACGTCCGCCGAAATTCC
TGACATGGACGAGGCGAGGCAACGGGAGGTAGCGTCCGGGCTGAGGGACA
CCTACAAGAGGCTGCTCGGGTCCGGCATGTTTCAGCGTAACCCTGACGGA
ACGTCCGCCGAAATTCCTGACATGGACGAGCTTGCGAGGGAGTACGAAGA
GGACGGGTTCATGCCCAAGGACAGCGATTTTTCCGACGAGGAGCTTCGCA
AGAACGAGGCGATGTCGATGTCGGTCATGTCGGGCGGGTTGGATGATGAA
TTTGACTTCGACGCCAACGACCCGGCCGTTCGAGCGGCTTTCGGTCTAGA
AGGAGAGAAAAAGGGGAATGGAAAGCCGTAGCTTGCGAGGGAGTACGAAG
AGGACGGGTTCATGCCCAAGGACAGCGATTTTTCCGACGAGGAGCTTCGC
AAGAACGAGGCGATGTCGATGTCGGTCATGTCGGGCGGGTTGGATGATGA
ATTTGACTTCGACGCCAACGACCCGGCCGTTCGAGCGGCTTTCGGTCTAG
AAGGAGAGAAAAAGGGGAATGGAAAGCCGTAG
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