mRNA_H-elongata_contig898.16476.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig898.16476.1
Unique NamemRNA_H-elongata_contig898.16476.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig898.16476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig898contigH-elongata_contig898:5418..6594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size332
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig898.16476.1prot_H-elongata_contig898.16476.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig898 5466..6594 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931298.269144-UTR-H-elongata_contig898:5417..54651622931298.269144-UTR-H-elongata_contig898:5417..5465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig898 5418..5465 -
1691679778.7659616-UTR-H-elongata_contig898:5417..54651691679778.7659616-UTR-H-elongata_contig898:5417..5465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig898 5418..5465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931298.2903337-CDS-H-elongata_contig898:5465..56181622931298.2903337-CDS-H-elongata_contig898:5465..5618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig898 5466..5618 -
1691679778.7766325-CDS-H-elongata_contig898:5465..56181691679778.7766325-CDS-H-elongata_contig898:5465..5618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig898 5466..5618 -
1622931298.316694-CDS-H-elongata_contig898:6109..62051622931298.316694-CDS-H-elongata_contig898:6109..6205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig898 6110..6205 -
1691679778.7872138-CDS-H-elongata_contig898:6109..62051691679778.7872138-CDS-H-elongata_contig898:6109..6205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig898 6110..6205 -
1622931298.3460553-CDS-H-elongata_contig898:6561..65941622931298.3460553-CDS-H-elongata_contig898:6561..6594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig898 6562..6594 -
1691679778.7996788-CDS-H-elongata_contig898:6561..65941691679778.7996788-CDS-H-elongata_contig898:6561..6594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig898 6562..6594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig898.16476.1

>prot_H-elongata_contig898.16476.1 ID=prot_H-elongata_contig898.16476.1|Name=mRNA_H-elongata_contig898.16476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
LFCQRFCFARKAQLEWNKEQQRKGAKLAKHKKEENVPAIEKTKRTSNQGG
VNKEHVLEERQKEEEEGKKSDAVKLPCDTAIRRPCNIGWISEV*
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mRNA from alignment at H-elongata_contig898:5418..6594-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig898.16476.1 ID=mRNA_H-elongata_contig898.16476.1|Name=mRNA_H-elongata_contig898.16476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1177bp|location=Sequence derived from alignment at H-elongata_contig898:5418..6594- (Himanthalia elongata Himel1 dioecious)
CTGTTCTGCCAACGGTTTTGCTTCGCTCGCAAGGTCAGAACCCTGCTATC
TCACGACTTGCACGCGTAGTGACTAGAAAGTGATAAACGTGTGGTGCCGT
ACTCCGACCACGTTTCCGCATTTTTTAAAGTGAATTTTGCGGGGAAGAGA
TGAATTGAGATGAATGCCGCGCATGGGTTTATTCCTATATATAAGGCGTT
GCTTGGTCTGCGCTACTTTCCGCTCGACCAAGCGCGCCGTGCTCGAATCA
GAAGAGGTTTAGAGTAAGAAACGCAAGCACGGGGACTGGTGCTCTCGATA
TACTGCCCCTCCTCTCTAGTAAATACATATTAAAATAAAGTTGCTCCTTT
GCTGATCCGGCGAAATATCATAAACGTATCCACCAAAAGGCTCAACTAGA
GTGGAACAAGGAGCAACAAAGAAAAGGAGCCAAATTGGCGAAACACAAAA
AAGAAGAGAACGTTCCGGCGATAGAGAAAACTAAGGTGTGACACGCGAAA
GCTACGACAGTGGGTTTTGATCCACCATTAACTGGAGCGATAAAACGGCA
GTACTTTTCTGGAACACGGCTTAGTATTGTTCAATGCGATCTATGTTATT
GTGTGCTTCTTCTTGGGGGTTCAGTGAGAATGAGCCTTTGAGTACGCCAC
GCTGATAGTGTACGCATAACGGCTAGACGACTGAAAGGTGAACGGTATTC
GATTCCTCCCGGGGTTAGCCGAATCATCCCCCCGCCCCCCCAGATATGGC
AGAGACTGGTGTTGGGAAGAAGAAACGTGCACGGCTTATGGTTTCACAAG
CTCGCCATTAAACACCGACTACATGTATACCAGATCGAGTGAACAATTCT
AGTGCTCCTTCACTTTGGGCTGTATATTATAACTACTGACCTTGCGCCCT
TTGGCCCTAAACGGTCTTCTGACTGTATCCTCCCCACCGCGCATTTGGAT
CCCACCTTCCTCAATCCTTCTCGAAGCGGACAAGTAATCAAGGCGGTGTA
AATAAAGAACATGTGCTTGAGGAGCGACAAAAAGAGGAGGAGGAGGGGAA
AAAAAGCGACGCGGTCAAGCTGCCTTGCGATACAGCGATAAGGCGACCCT
GTAACATCGGGTGGATTTCCGAGGTGTGACTTCGATATGATACAACATCT
TACAAAGAAGGCGATCAAGTGTAAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig898:5418..6594-

>mRNA_H-elongata_contig898.16476.1 ID=mRNA_H-elongata_contig898.16476.1|Name=mRNA_H-elongata_contig898.16476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig898:5418..6594- (Himanthalia elongata Himel1 dioecious)
CTGTTCTGCCAACGGTTTTGCTTCGCTCGCAAGCTGTTCTGCCAACGGTT
TTGCTTCGCTCGCAAGGCTCAACTAGAGTGGAACAAGGAGCAACAAAGAA
AAGGAGCCAAATTGGCGAAACACAAAAAAGAAGAGAACGTTCCGGCGATA
GAGAAAACTAAGGCTCAACTAGAGTGGAACAAGGAGCAACAAAGAAAAGG
AGCCAAATTGGCGAAACACAAAAAAGAAGAGAACGTTCCGGCGATAGAGA
AAACTAAGCGGACAAGTAATCAAGGCGGTGTAAATAAAGAACATGTGCTT
GAGGAGCGACAAAAAGAGGAGGAGGAGGGGAAAAAAAGCGACGCGGTCAA
GCTGCCTTGCGATACAGCGATAAGGCGACCCTGTAACATCGGGTGGATTT
CCGAGGTGTGACGGACAAGTAATCAAGGCGGTGTAAATAAAGAACATGTG
CTTGAGGAGCGACAAAAAGAGGAGGAGGAGGGGAAAAAAAGCGACGCGGT
CAAGCTGCCTTGCGATACAGCGATAAGGCGACCCTGTAACATCGGGTGGA
TTTCCGAGGTGTGA
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