mRNA_H-elongata_contig8958.16456.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8958.16456.1
Unique NamemRNA_H-elongata_contig8958.16456.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8958.16456.1 vs. uniprot
Match: D7FNQ1_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ1_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 8.430e-67
Identity = 122/208 (58.65%), Postives = 138/208 (66.35%), Query Frame = 1 
Query:    1 WTPLMLACAEGDVCAVRAIIDVGGARASARVETKVLASSTPLHIASRYGHAGAAAALLELGAVVDARDTIGMXXXXXXXXXXXXXXXXXXXXXXXXXXX--EGPGGATAYDAARMAGFDDACALLKKRSPAGD--ASATMMRKALEAWLKSLGCEDFLGRFVRVGYDDLQFIAVQGLTEEDLDCIGVPREKLGLRKKLLAMYGVGKFL 612
            WTPL LACAEG V  VRAI+++GGAR S   +TKVLASS+PLH+ASRYGHAG AA LLELGAVVDARDT G                              E P  A A D A MAGFDDA  LL+ R+ AG+    A   RK L +WL  LGC +FLGRF+R GYDDLQF+A QGLTE DLDC+GVP +KLGLRKKLLAM+GV  FL
Sbjct:   41 WTPLALACAEGRVELVRAIVEIGGARPSFSAQTKVLASSSPLHVASRYGHAGVAAVLLELGAVVDARDTFGFTPLCYAAGNGHLKTIEVLLEAGADASSSFEAPYAAKALDMAEMAGFDDAATLLRSRALAGEDGGEAVRRRKTLASWLGVLGCREFLGRFLRAGYDDLQFMASQGLTEADLDCVGVPGDKLGLRKKLLAMHGVEGFL 248
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BLAST of mRNA_H-elongata_contig8958.16456.1 vs. uniprot
Match: A0A7S2FWK0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FWK0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.180e-19
Identity = 93/203 (45.81%), Postives = 117/203 (57.64%), Query Frame = 1 
Query:    1 WTPLMLACAEGDVCAVRAIIDVGGARASARVETKVLASS------TPLHIASRYGHAGAAAALLELGAVVDARDTIGMXXXXXXXXXXXXXXXXXXXXXXXXXXXEGPGGATAYDAARMAGFDDACALLKKRSPAGDASATMMRKALEAWLKSLGCEDFLGRFVRVGYDDLQFIAVQGLTEEDLDCIGVPREKLGLRKKLLAM 591
            W PL L  AEG+   V A++  G     ARV+     ++      T LHIA+RYGHA   +AL+  GA V+ RD  G    XXXXXXXXXXXXXXXXXXXXXXXX                  +  ALL+ R  + +AS       L +WL+SLGC  +  RF+  GYD  Q+I+  GL E+D+D + VPR KLGLRKKLLA+
Sbjct:   39 WNPLQLLAAEGNKAGVEAVLTAG-----ARVDFHAQPAAPGVPWQTALHIAARYGHAEVVSALVSAGADVNLRDGSGFAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRELAALLRTRKASPEASD---HDKLASWLESLGCAKYTTRFLDAGYD-FQYISEHGLAEDDIDLVQVPRTKLGLRKKLLAL 232
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BLAST of mRNA_H-elongata_contig8958.16456.1 vs. uniprot
Match: A0A482UJW8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UJW8_9ARCH)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-8
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  439 SLGCEDFLGRFVRVGYDDLQFIAVQGLTEEDLDCIGVPREKLGLRKKLLAMYGVGKF 609
            +LG  ++L RF+  GYD L FI   GL++ DLDCIGVP  K+GLR+K+  ++G+ +F
Sbjct:    9 TLGGSEYLQRFLDAGYD-LPFIHTHGLSDVDLDCIGVPVNKMGLRRKMSKLHGLDRF 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8958.16456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNQ1_ECTSI8.430e-6758.65Chain A, Crystal Structure Of A Designed Full Cons... [more]
A0A7S2FWK0_9STRA3.180e-1945.81Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482UJW8_9ARCH1.320e-849.12Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8958contigH-elongata_contig8958:1290..2362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.1
Seed ortholog evalue1.7e-50
Seed eggNOG ortholog2880.D7FNQ1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_004680.1
Exons2
Model size663
Cds size651
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8958.16456.1prot_H-elongata_contig8958.16456.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8958 1302..2362 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931296.0261073-UTR-H-elongata_contig8958:1289..13011622931296.0261073-UTR-H-elongata_contig8958:1289..1301Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8958 1290..1301 +
1691679778.0557961-UTR-H-elongata_contig8958:1289..13011691679778.0557961-UTR-H-elongata_contig8958:1289..1301Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8958 1290..1301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931296.067307-CDS-H-elongata_contig8958:1301..15431622931296.067307-CDS-H-elongata_contig8958:1301..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 1302..1543 +
1691679778.0726566-CDS-H-elongata_contig8958:1301..15431691679778.0726566-CDS-H-elongata_contig8958:1301..1543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 1302..1543 +
1622931296.315984-CDS-H-elongata_contig8958:1953..23621622931296.315984-CDS-H-elongata_contig8958:1953..2362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 1954..2362 +
1691679778.0817983-CDS-H-elongata_contig8958:1953..23621691679778.0817983-CDS-H-elongata_contig8958:1953..2362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8958 1954..2362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8958.16456.1

>prot_H-elongata_contig8958.16456.1 ID=prot_H-elongata_contig8958.16456.1|Name=mRNA_H-elongata_contig8958.16456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
MLACAEGDVCAVRAIIDVGGARASARVETKVLASSTPLHIASRYGHAGAA
AALLELGAVVDARDTIGMTSLHFAAAKGHLRTIDVLLSGGADASAEGPGG
ATAYDAARMAGFDDACALLKKRSPAGDASATMMRKALEAWLKSLGCEDFL
GRFVRVGYDDLQFIAVQGLTEEDLDCIGVPREKLGLRKKLLAMYGVGKFL
GKLHDEKRDRATSGRST
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mRNA from alignment at H-elongata_contig8958:1290..2362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8958.16456.1 ID=mRNA_H-elongata_contig8958.16456.1|Name=mRNA_H-elongata_contig8958.16456.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1073bp|location=Sequence derived from alignment at H-elongata_contig8958:1290..2362+ (Himanthalia elongata Himel1 dioecious)
TGGACACCCTTGATGCTAGCGTGCGCCGAGGGTGACGTTTGTGCGGTGCG
TGCAATCATAGACGTAGGAGGCGCTCGCGCATCCGCACGCGTGGAGACCA
AGGTATTGGCCAGTTCTACACCCTTACACATCGCCTCCCGCTATGGACAT
GCTGGTGCCGCTGCCGCCTTGCTAGAACTCGGTGCTGTTGTTGATGCCAG
AGACACGATAGGCATGACATCGCTGCACTTCGCCGCGGCGAAAGGTCACT
TAAGGTAACTCGGGAGTTGAAGGATATATGGCTATTCGTGATATTTGGCG
CATTTCCTGTACACCTTGAAAAGTAAAGCGCATTTATTCCATCAAGACAT
ACAGTATCTTTACTTGGCAAGAAAACCCCCCCACCTACGCCACGATTTTG
TTTCTTCTTCTTTTTCGAGGATTAATCTGGTGACTTTGTCGTGTTCACGA
AAAACACTTTTTTGTTGCTCGCGTTATTGTTTTAGCAAATGGGCCTTGTT
AACAGCTTTACATGGTGTTGGCGCACACCTTTCTTCCTATACTTGCTACG
TATGGCGTAAAGCGGAGACATTACAAGTACCTGCATTGATTTAACTTTTC
ACGACAACGGTCATCGTGTGTGTCTTGCATAAGCGACGTTCTTGCTGCTC
GAGACATTCCCCAGGACGATAGACGTGTTGCTCAGTGGAGGCGCGGATGC
TTCTGCAGAAGGTCCGGGAGGGGCAACGGCATATGACGCAGCGAGAATGG
CGGGCTTTGACGACGCATGCGCGCTCCTCAAAAAGCGTTCGCCGGCAGGA
GATGCATCGGCCACCATGATGAGGAAGGCTCTGGAGGCATGGCTCAAGTC
GCTCGGCTGCGAGGATTTTTTGGGGAGGTTCGTGAGAGTCGGGTACGACG
ACCTTCAGTTCATCGCGGTGCAGGGGTTAACCGAGGAGGACCTGGACTGT
ATCGGGGTGCCAAGAGAGAAGCTGGGGTTAAGGAAAAAGTTGTTGGCCAT
GTATGGCGTTGGGAAATTTCTAGGTAAGCTCCACGACGAAAAACGGGATA
GAGCTACTAGCGGTAGAAGTACT
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Coding sequence (CDS) from alignment at H-elongata_contig8958:1290..2362+

>mRNA_H-elongata_contig8958.16456.1 ID=mRNA_H-elongata_contig8958.16456.1|Name=mRNA_H-elongata_contig8958.16456.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig8958:1290..2362+ (Himanthalia elongata Himel1 dioecious)
ATGCTAGCGTGCGCCGAGGGTGACGTTTGTGCGGTGCGTGCAATCATAGA
CGTAGGAGGCGCTCGCGCATCCGCACGCGTGGAGACCAAGGTATTGGCCA
GTTCTACACCCTTACACATCGCCTCCCGCTATGGACATGCTGGTGCCGCT
GCCGCCTTGCTAGAACTCGGTGCTGTTGTTGATGCCAGAGACACGATAGG
CATGACATCGCTGCACTTCGCCGCGGCGAAAGGTCACTTAAGATGCTAGC
GTGCGCCGAGGGTGACGTTTGTGCGGTGCGTGCAATCATAGACGTAGGAG
GCGCTCGCGCATCCGCACGCGTGGAGACCAAGGTATTGGCCAGTTCTACA
CCCTTACACATCGCCTCCCGCTATGGACATGCTGGTGCCGCTGCCGCCTT
GCTAGAACTCGGTGCTGTTGTTGATGCCAGAGACACGATAGGCATGACAT
CGCTGCACTTCGCCGCGGCGAAAGGTCACTTAAGGACGATAGACGTGTTG
CTCAGTGGAGGCGCGGATGCTTCTGCAGAAGGTCCGGGAGGGGCAACGGC
ATATGACGCAGCGAGAATGGCGGGCTTTGACGACGCATGCGCGCTCCTCA
AAAAGCGTTCGCCGGCAGGAGATGCATCGGCCACCATGATGAGGAAGGCT
CTGGAGGCATGGCTCAAGTCGCTCGGCTGCGAGGATTTTTTGGGGAGGTT
CGTGAGAGTCGGGTACGACGACCTTCAGTTCATCGCGGTGCAGGGGTTAA
CCGAGGAGGACCTGGACTGTATCGGGGTGCCAAGAGAGAAGCTGGGGTTA
AGGAAAAAGTTGTTGGCCATGTATGGCGTTGGGAAATTTCTAGGTAAGCT
CCACGACGAAAAACGGGATAGAGCTACTAGCGGTAGAAGTACTGACGATA
GACGTGTTGCTCAGTGGAGGCGCGGATGCTTCTGCAGAAGGTCCGGGAGG
GGCAACGGCATATGACGCAGCGAGAATGGCGGGCTTTGACGACGCATGCG
CGCTCCTCAAAAAGCGTTCGCCGGCAGGAGATGCATCGGCCACCATGATG
AGGAAGGCTCTGGAGGCATGGCTCAAGTCGCTCGGCTGCGAGGATTTTTT
GGGGAGGTTCGTGAGAGTCGGGTACGACGACCTTCAGTTCATCGCGGTGC
AGGGGTTAACCGAGGAGGACCTGGACTGTATCGGGGTGCCAAGAGAGAAG
CTGGGGTTAAGGAAAAAGTTGTTGGCCATGTATGGCGTTGGGAAATTTCT
AGGTAAGCTCCACGACGAAAAACGGGATAGAGCTACTAGCGGTAGAAGTA
CT
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