mRNA_H-elongata_contig89075.16413.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig89075.16413.1
Unique Name	mRNA_H-elongata_contig89075.16413.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5L7R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R0_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.120e-43
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FSKRLES  KDVECFFGI+KGRFRI KL+IPYHK++D+DNVFFTCCILHNMLHS DN  EMEEE NWAG+AGLHN W+
Sbjct:   67 FSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWE 144

[Close]

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.670e-41
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FSKRLES  KDVECFFGI+KG FRI KL+IPYHK++D+DNVFFTCCILHNMLHS DN  EMEEE NWAG+AGLHN W+
Sbjct:  112 FSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWE 189

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BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.360e-40
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FSKRLES  KDVECFFGI+KGRFRI KL+IPYHK++D+DNVFFTCCILHNMLHS DN  EMEEE NWAG+AGLHN W+
Sbjct:  353 FSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWE 430

[Close]

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.730e-36
Identity = 61/78 (78.21%), Postives = 68/78 (87.18%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FSKRLESA KDVEC+FGI+KGRFRI KLAI +HK++ +DNVFFTCCILHNMLHS DN G+M EE NWAGSAGLHN  D
Sbjct:  278 FSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAAD 355

[Close]

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 6.310e-36
Identity = 61/78 (78.21%), Postives = 68/78 (87.18%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FSKRLESA KDVEC+FGI+KGRFRI KLAI +HK++ +DNVFFTCCILHNMLHS DN G+M EE NWAGSAGLHN  D
Sbjct:  369 FSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAAD 446

[Close]

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.070e-31
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FS+ LES  KDVECFFGI+KGRFRI KL +PYHK++ +DN+FFTCCILHNMLH+ D     +E ++W GSAG H+ W+
Sbjct:  112 FSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWE 189

[Close]

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.950e-31
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FS+ LES  KDVECFFGI+KGRFRI KL + Y  K+D+DN+F TCCILHNMLH+ D     EE+ +W GSAGLH+ WD
Sbjct:   20 FSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWD 97

[Close]

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.130e-30
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FS+ LES  KDVECFF I+KGRFRI KL + Y  K+D+DN+F TCCILHNMLH+ D     EE+ +W GSAGLH+ WD
Sbjct:   30 FSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWD 107

[Close]

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.550e-30
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FS+ LES  KDVECFFGI+KGRFRI KL +PYHK++ +DN+FFTCCILHNMLH+ D     EE ++W GSAG H+ W+
Sbjct:  490 FSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWE 567

[Close]

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 8.400e-30
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1

Query:    1 FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHNMLHSVDNGGEMEEESNWAGSAGLHNVWD 234
            FS+ LES  KDVECFFGI+KGRFRI KL + Y  K+D+DN+F+TCCILHNMLH+ D     EE+ +W GSAGLH+ WD
Sbjct:  351 FSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWD 428

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot

BLAST of mRNA_H-elongata_contig89075.16413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L7R0_9PHAE	4.120e-43	80.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTC6_9PHAE	1.670e-41	79.49	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5JAU4_9PHAE	2.360e-40	80.77	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KY50_9PHAE	1.730e-36	78.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPH7_9PHAE	6.310e-36	78.21	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQM6_9PHAE	1.070e-31	62.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMK5_9PHAE	3.950e-31	64.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L135_9PHAE	1.130e-30	62.82	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEB6_9PHAE	3.550e-30	64.10	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5K5C1_9PHAE	8.400e-30	64.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig89075	contig	H-elongata_contig89075:2205..2441 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	105.9
Seed ortholog evalue	8.7e-21
Seed eggNOG ortholog	2880.D7FSK2
EggNOG free text desc.	Plant transposon protein
EggNOG OGs	2E2RF@1,2S9YA@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	237
Cds size	237
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931291.7284584-CDS-H-elongata_contig89075:2204..2441	1622931291.7284584-CDS-H-elongata_contig89075:2204..2441	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig89075 2205..2441 +
1691679776.241153-CDS-H-elongata_contig89075:2204..2441	1691679776.241153-CDS-H-elongata_contig89075:2204..2441	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig89075 2205..2441 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig89075.16413.1	prot_H-elongata_contig89075.16413.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig89075 2205..2441 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig89075:2205..2441+
coding sequence from alignment at H-elongata_contig89075:2205..2441+

protein sequence of mRNA_H-elongata_contig89075.16413.1

>prot_H-elongata_contig89075.16413.1 ID=prot_H-elongata_contig89075.16413.1|Name=mRNA_H-elongata_contig89075.16413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
FSKRLESAHKDVECFFGIIKGRFRICKLAIPYHKKQDLDNVFFTCCILHN
MLHSVDNGGEMEEESNWAGSAGLHNVWDN

mRNA from alignment at H-elongata_contig89075:2205..2441+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig89075.16413.1 ID=mRNA_H-elongata_contig89075.16413.1|Name=mRNA_H-elongata_contig89075.16413.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig89075:2205..2441+ (Himanthalia elongata Himel1 dioecious)
TTCTCGAAGAGGCTAGAGAGCGCGCACAAGGACGTCGAGTGCTTCTTTGG
CATTATCAAGGGCCGCTTTCGTATCTGCAAGCTCGCTATCCCGTACCACA
AAAAGCAAGATCTGGACAACGTGTTTTTCACGTGCTGCATCCTCCACAAC
ATGCTGCATAGCGTCGACAATGGAGGCGAGATGGAAGAGGAATCCAATTG
GGCAGGAAGCGCAGGCCTGCACAACGTGTGGGACAAC

Coding sequence (CDS) from alignment at H-elongata_contig89075:2205..2441+

>mRNA_H-elongata_contig89075.16413.1 ID=mRNA_H-elongata_contig89075.16413.1|Name=mRNA_H-elongata_contig89075.16413.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig89075:2205..2441+ (Himanthalia elongata Himel1 dioecious)
TTCTCGAAGAGGCTAGAGAGCGCGCACAAGGACGTCGAGTGCTTCTTTGG
CATTATCAAGGGCCGCTTTCGTATCTGCAAGCTCGCTATCCCGTACCACA
AAAAGCAAGATCTGGACAACGTGTTTTTCACGTGCTGCATCCTCCACAAC
ATGCTGCATAGCGTCGACAATGGAGGCGAGATGGAAGAGGAATCCAATTG
GGCAGGAAGCGCAGGCCTGCACAACGTGTGGGACAACTTCTCGAAGAGGC
TAGAGAGCGCGCACAAGGACGTCGAGTGCTTCTTTGGCATTATCAAGGGC
CGCTTTCGTATCTGCAAGCTCGCTATCCCGTACCACAAAAAGCAAGATCT
GGACAACGTGTTTTTCACGTGCTGCATCCTCCACAACATGCTGCATAGCG
TCGACAATGGAGGCGAGATGGAAGAGGAATCCAATTGGGCAGGAAGCGCA
GGCCTGCACAACGTGTGGGACAAC