mRNA_H-elongata_contig88931.16401.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88931.16401.1
Unique NamemRNA_H-elongata_contig88931.16401.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A6H5JJU9_9PHAE (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.040e-14
Identity = 52/129 (40.31%), Postives = 61/129 (47.29%), Query Frame = 3
Query:    6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQD--QEGGQ----------------------------------------------------GRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGA 230
            +VLRRT+ DR+SQSALLLG+ G+GKSLVLD VL+   QE                                                         R PFR VYLNG AQ +D VAMRE+VQQLG+TGA
Sbjct:   61 RVLRRTIFDRQSQSALLLGNTGTGKSLVLDSVLRSLAQEASSLEKAKGATAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPFRAVYLNGAAQENDGVAMREIVQQLGITGA 189          
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A8D2MTG0_ZONAL (Origin recognition complex subunit 4 n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2MTG0_ZONAL)

HSP 1 Score: 70.9 bits (172), Expect = 7.030e-14
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
            ++LRRT +  ES SALL+G RGSGKS +L+ VL+D    +  R     V+LNG  QT+DSVA++E+ +QL +    GD
Sbjct:   24 ELLRRTTVHGESNSALLIGPRGSGKSALLNHVLKDLREMEQVRENLLEVHLNGLLQTNDSVALKEITRQLQLENVVGD 101          
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A8D2MYH9_ZONAL (Origin recognition complex subunit 4 n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2MYH9_ZONAL)

HSP 1 Score: 70.9 bits (172), Expect = 1.720e-12
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
            ++LRRT +  ES SALL+G RGSGKS +L+ VL+D    +  R     V+LNG  QT+DSVA++E+ +QL +    GD
Sbjct:   24 ELLRRTTVHGESNSALLIGPRGSGKSALLNHVLKDLREMEQVRENLLEVHLNGLLQTNDSVALKEITRQLQLENVVGD 101          
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI0005283CC6 (origin recognition complex subunit 4 n=1 Tax=Eurypyga helias TaxID=54383 RepID=UPI0005283CC6)

HSP 1 Score: 67.8 bits (164), Expect = 5.490e-12
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
            ++L+RT+I  ES SAL++G RGSGK+ +L+ VL++ E  +  R     V+LNG  QT+D VA++E+ +QL +    GD
Sbjct:   54 ELLKRTMIHGESNSALIIGPRGSGKTALLNHVLKELEKMKQVRENLLEVHLNGLLQTNDKVALKEITRQLNLENVVGD 131          
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI000522A305 (origin recognition complex subunit 4 n=1 Tax=Leptosomus discolor TaxID=188344 RepID=UPI000522A305)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-11
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
            ++L+RT +  ES SAL++G RGSGK+ +L+ VL++  G +  R     V+LNG  QT+D VA++E+ +QL +    GD
Sbjct:   54 ELLKRTAVHGESNSALIIGPRGSGKTALLNHVLKELMGMKQLRENLLQVHLNGLLQTNDKVALKEITRQLHLENVVGD 131          
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI0006D50CCE (origin recognition complex subunit 4 isoform X1 n=2 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D50CCE)

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-11
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 3
Query:    9 VLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
            +L+RTV + ES SAL++G RG GKS +LD VL +    +     + VV LNG  QTDD++A+R +++QL +T   GD
Sbjct:   41 LLKRTVSNGESDSALIVGPRGCGKSTLLDSVLNELSNSESNE--YLVVKLNGLVQTDDNLALRTIIEQLHITELDGD 115          
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A1Y1XYX6_9FUNG (Origin recognition complex subunit 4 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XYX6_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-11
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 3
Query:    9 VLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQD--QEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGV 221
            +L RTV   ES SALL+G RGSGKS++++RVLQ+  Q+     +  F  V+LNG  QTDD +A++E+++QL +
Sbjct:   44 LLERTVSQGESNSALLIGQRGSGKSMLVNRVLQNLTQKYHVDNKKDFYQVHLNGLVQTDDRIALKEIIRQLSL 116          
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI00051BCE93 (origin recognition complex subunit 4 n=1 Tax=Cuculus canorus TaxID=55661 RepID=UPI00051BCE93)

HSP 1 Score: 68.2 bits (165), Expect = 1.750e-11
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
            ++L+RT+I  ES SALL+G RGSGK+++L+  L +  G +  R     V+LNG  QT+D VA++E+ +QL +    GD
Sbjct:   49 ELLKRTIIHGESNSALLIGPRGSGKTVLLNHALNELRGMKQVRGNLLEVHLNGLLQTNDKVALKEITRQLQLENVVGD 126          
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: A0A8C0IV31_CHEAB (Uncharacterized protein n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0IV31_CHEAB)

HSP 1 Score: 64.7 bits (156), Expect = 2.590e-11
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
            ++L+RT I  ES SAL++G RGSGK+++L+ VL++    +  R     V+LNG  QT+D +A++E+ +QL +    GD
Sbjct:   49 ELLKRTTIHGESNSALIIGPRGSGKTMLLNHVLKELMEVKQVRENLLQVHLNGLLQTNDKIALKEITRQLQMENVVGD 126          
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Match: UPI0004F0E510 (origin recognition complex subunit 4 n=1 Tax=Acanthisitta chloris TaxID=57068 RepID=UPI0004F0E510)

HSP 1 Score: 67.0 bits (162), Expect = 4.580e-11
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    6 QVLRRTVIDRESQSALLLGSRGSGKSLVLDRVLQDQEGGQGRRPPFRVVYLNGTAQTDDSVAMREVVQQLGVTGAKGD 239
            ++L+RT++  ES SAL++G RGSGK+++L  VL+D +  +  R     V+LNG  QT+D VA++E+ +QL +    GD
Sbjct:   49 ELLKRTILHGESNSALIIGPRGSGKTVLLKHVLKDLQEMKQVRENLLEVHLNGLLQTNDRVALKEITRQLKLENVVGD 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88931.16401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJU9_9PHAE1.040e-1440.31Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
A0A8D2MTG0_ZONAL7.030e-1447.44Origin recognition complex subunit 4 n=1 Tax=Zonot... [more]
A0A8D2MYH9_ZONAL1.720e-1247.44Origin recognition complex subunit 4 n=1 Tax=Zonot... [more]
UPI0005283CC65.490e-1243.59origin recognition complex subunit 4 n=1 Tax=Euryp... [more]
UPI000522A3051.080e-1142.31origin recognition complex subunit 4 n=1 Tax=Lepto... [more]
UPI0006D50CCE1.300e-1145.45origin recognition complex subunit 4 isoform X1 n=... [more]
A0A1Y1XYX6_9FUNG1.300e-1147.95Origin recognition complex subunit 4 n=1 Tax=Basid... [more]
UPI00051BCE931.750e-1143.59origin recognition complex subunit 4 n=1 Tax=Cucul... [more]
A0A8C0IV31_CHEAB2.590e-1141.03Uncharacterized protein n=1 Tax=Chelonoidis abingd... [more]
UPI0004F0E5104.580e-1142.31origin recognition complex subunit 4 n=1 Tax=Acant... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88931contigH-elongata_contig88931:608..937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size262
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931290.4787679-CDS-H-elongata_contig88931:607..7631622931290.4787679-CDS-H-elongata_contig88931:607..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88931 608..763 -
1691679775.737277-CDS-H-elongata_contig88931:607..7631691679775.737277-CDS-H-elongata_contig88931:607..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88931 608..763 -
1622931290.5130084-CDS-H-elongata_contig88931:832..9371622931290.5130084-CDS-H-elongata_contig88931:832..937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88931 833..937 -
1691679775.748308-CDS-H-elongata_contig88931:832..9371691679775.748308-CDS-H-elongata_contig88931:832..937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88931 833..937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88931.16401.1prot_H-elongata_contig88931.16401.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88931 608..937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88931.16401.1

>prot_H-elongata_contig88931.16401.1 ID=prot_H-elongata_contig88931.16401.1|Name=mRNA_H-elongata_contig88931.16401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
FPRCYVEPSSIARVRAPCCLGPGVQESHSCLTGFSRIRKAGRGVVLPFGW
CTLTERRRQTIASRCERWCSSWGSRARRGTTTAGGN*
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mRNA from alignment at H-elongata_contig88931:608..937-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88931.16401.1 ID=mRNA_H-elongata_contig88931.16401.1|Name=mRNA_H-elongata_contig88931.16401.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig88931:608..937- (Himanthalia elongata Himel1 dioecious)
TTTCCCAGGTGCTACGTCGAACCGTCATCGATCGCGAGAGTCAGAGCGCC CTGCTGCTTGGGTCCAGGGGTTCAGGAAAGTCACTCGTGCTTGACAGGGT TCTCCGTAGCCTGGCGCGGGAGAAAGCCGAGCTCTCGGCTGGGAGGAGGA AGGGCAAGCGGCAAAGGGTTTCAGAGGATCAGGAAGGCGGGCAGGGGCGT CGTCCTCCCTTTCGGGTGGTGTACCTTAACGGAACGGCGCAGACAGACGA TAGCGTCGCGATGCGAGAGGTGGTGCAGCAGCTGGGGGTCACGGGCGCGA AGGGGGACGACTACAGCAGGTGGGAATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig88931:608..937-

>mRNA_H-elongata_contig88931.16401.1 ID=mRNA_H-elongata_contig88931.16401.1|Name=mRNA_H-elongata_contig88931.16401.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig88931:608..937- (Himanthalia elongata Himel1 dioecious)
TTTCCCAGGTGCTACGTCGAACCGTCATCGATCGCGAGAGTCAGAGCGCC
CTGCTGCTTGGGTCCAGGGGTTCAGGAAAGTCACTCGTGCTTGACAGGGT
TCTCCTTTCCCAGGTGCTACGTCGAACCGTCATCGATCGCGAGAGTCAGA
GCGCCCTGCTGCTTGGGTCCAGGGGTTCAGGAAAGTCACTCGTGCTTGAC
AGGGTTCTCCAGGATCAGGAAGGCGGGCAGGGGCGTCGTCCTCCCTTTCG
GGTGGTGTACCTTAACGGAACGGCGCAGACAGACGATAGCGTCGCGATGC
GAGAGGTGGTGCAGCAGCTGGGGGTCACGGGCGCGAAGGGGGACGACTAC
AGCAGGTGGGAATTAGAGGATCAGGAAGGCGGGCAGGGGCGTCGTCCTCC
CTTTCGGGTGGTGTACCTTAACGGAACGGCGCAGACAGACGATAGCGTCG
CGATGCGAGAGGTGGTGCAGCAGCTGGGGGTCACGGGCGCGAAGGGGGAC
GACTACAGCAGGTGGGAATTAG
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