mRNA_H-elongata_contig88758.16387.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88758.16387.1
Unique NamemRNA_H-elongata_contig88758.16387.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: D8LKJ6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ6_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.380e-11
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 1
Query:    1 GRFYYASTRKIYEGEWVEGTPKCGEYQDMPSV 96
            GR+ Y STRK+YEGEWVEGTPKCGEYQDMP+ 
Sbjct:  194 GRYLYMSTRKVYEGEWVEGTPKCGEYQDMPAA 225          
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: A0A836CJJ5_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.020e-8
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1
Query:    1 GRFYYASTRKIYEGEWVEGTPKCGEYQDMPSVSGAKQSMLDETPVI 138
            GR+ Y ST K+YEGEWV G+P CGEY+D P+  G      DE  V+
Sbjct:  184 GRYMYRSTGKVYEGEWVRGSPWCGEYKDAPAPPGPAAGEPDEAFVL 229          
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: A0A2P4YGX5_9STRA (Reverse transcriptase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YGX5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.520e-7
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1
Query:    1 GRFYYASTRKIYEGEWVEGTPKCGEYQDMPSVSGAKQSMLDE 126
            GR++Y +TRK+YEGEWV+G PKCG Y D    +     + DE
Sbjct:   42 GRYFYKATRKMYEGEWVDGAPKCGTYHDDSEYNMHDDDLDDE 83          
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: A0A5A8C4U6_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C4U6_CAFRO)

HSP 1 Score: 53.9 bits (128), Expect = 4.810e-7
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1
Query:    1 GRFYYASTRKIYEGEWVEGTPKCGEYQDMPSVSG 102
            GR +Y  TRK+YEGEWV+GTPKCG +  +P+  G
Sbjct:  199 GRLFYRRTRKMYEGEWVDGTPKCGVFSAIPAPGG 232          
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: H3HBB9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBB9_PHYRM)

HSP 1 Score: 53.5 bits (127), Expect = 4.930e-7
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 1
Query:    1 GRFYYASTRKIYEGEWVEGTPKCGEYQD 84
            GR++Y +TRK+YEGEWV+G PKCG Y D
Sbjct:   46 GRYFYKATRKMYEGEWVDGAPKCGTYHD 73          
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: A0A7S2CHE2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHE2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.230e-6
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    1 GRFYYASTRKIYEGEWVEGTPKCGEYQDMPSVSGAKQSMLDETPV 135
            GR++Y ST K+YEGEWV+  PKCGE+++ P  S       D+ PV
Sbjct:  194 GRYFYRSTSKVYEGEWVDDIPKCGEFKEAPPGS------FDDFPV 232          
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: A0A0P1B5Q7_PLAHL (N-carbamoylputrescine amidase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B5Q7_PLAHL)

HSP 1 Score: 52.0 bits (123), Expect = 2.330e-6
Identity = 18/28 (64.29%), Postives = 23/28 (82.14%), Query Frame = 1
Query:    1 GRFYYASTRKIYEGEWVEGTPKCGEYQD 84
            GR++Y +TRK+YEGEW+ G PKCG Y D
Sbjct:  491 GRYFYKATRKVYEGEWINGAPKCGIYYD 518          
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: A0A8J2WZK6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZK6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.300e-6
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1
Query:    4 RFYYASTRKIYEGEWVEGTPKCGEYQDM-PSVSGAKQSMLDE 126
            R++YAST KIYEGEWV+G P+CG ++D  P  +       DE
Sbjct:  196 RYFYASTGKIYEGEWVDGAPRCGSFRDATPEEANGTLPSADE 237          
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: F0YIJ9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIJ9_AURAN)

HSP 1 Score: 49.7 bits (117), Expect = 6.620e-6
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 RFYYASTRKIYEGEWVEGTPKCGEYQD 84
            R++Y STRK+YEGEWV G P+CG ++D
Sbjct:  137 RYFYKSTRKVYEGEWVAGVPRCGAFRD 163          
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Match: A0A6G0XIY3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIY3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.080e-6
Identity = 20/46 (43.48%), Postives = 27/46 (58.70%), Query Frame = 1
Query:    1 GRFYYASTRKIYEGEWVEGTPKCGEYQDMPSVSGAKQSMLDETPVI 138
            GRF+Y ST K+YE EW++  PKCG Y D+   +  K     E P +
Sbjct:  199 GRFFYKSTHKVYEAEWLDDMPKCGTYHDVAESAFDKPPEAFELPEL 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88758.16387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LKJ6_ECTSI1.380e-1181.25N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A836CJJ5_9STRA2.020e-852.17EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A2P4YGX5_9STRA3.520e-750.00Reverse transcriptase (Fragment) n=1 Tax=Phytophth... [more]
A0A5A8C4U6_CAFRO4.810e-758.82Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
H3HBB9_PHYRM4.930e-767.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2CHE2_9STRA1.230e-648.89Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0P1B5Q7_PLAHL2.330e-664.29N-carbamoylputrescine amidase n=1 Tax=Plasmopara h... [more]
A0A8J2WZK6_9STRA4.300e-650.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YIJ9_AURAN6.620e-662.96Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6G0XIY3_9STRA8.080e-643.48Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88758contigH-elongata_contig88758:2406..2561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-16_003200.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931288.480093-CDS-H-elongata_contig88758:2405..25611622931288.480093-CDS-H-elongata_contig88758:2405..2561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88758 2406..2561 -
1691679774.859057-CDS-H-elongata_contig88758:2405..25611691679774.859057-CDS-H-elongata_contig88758:2405..2561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88758 2406..2561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88758.16387.1prot_H-elongata_contig88758.16387.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88758 2406..2561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88758.16387.1

>prot_H-elongata_contig88758.16387.1 ID=prot_H-elongata_contig88758.16387.1|Name=mRNA_H-elongata_contig88758.16387.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
GRFYYASTRKIYEGEWVEGTPKCGEYQDMPSVSGAKQSMLDETPVIRDAA
N*
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mRNA from alignment at H-elongata_contig88758:2406..2561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88758.16387.1 ID=mRNA_H-elongata_contig88758.16387.1|Name=mRNA_H-elongata_contig88758.16387.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig88758:2406..2561- (Himanthalia elongata Himel1 dioecious)
GGTCGATTCTACTACGCTTCCACTCGCAAGATTTACGAAGGAGAATGGGT AGAAGGGACACCCAAGTGCGGCGAGTATCAAGACATGCCATCGGTGAGTG GCGCCAAGCAATCTATGTTAGACGAGACCCCGGTGATCCGGGATGCGGCT AATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig88758:2406..2561-

>mRNA_H-elongata_contig88758.16387.1 ID=mRNA_H-elongata_contig88758.16387.1|Name=mRNA_H-elongata_contig88758.16387.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig88758:2406..2561- (Himanthalia elongata Himel1 dioecious)
GGTCGATTCTACTACGCTTCCACTCGCAAGATTTACGAAGGAGAATGGGT
AGAAGGGACACCCAAGTGCGGCGAGTATCAAGACATGCCATCGGTGAGTG
GCGCCAAGCAATCTATGTTAGACGAGACCCCGGTGATCCGGGATGCGGCT
AATTGAGGTCGATTCTACTACGCTTCCACTCGCAAGATTTACGAAGGAGA
ATGGGTAGAAGGGACACCCAAGTGCGGCGAGTATCAAGACATGCCATCGG
TGAGTGGCGCCAAGCAATCTATGTTAGACGAGACCCCGGTGATCCGGGAT
GCGGCTAATTGA
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