mRNA_H-elongata_contig88486.16371.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88486.16371.1
Unique NamemRNA_H-elongata_contig88486.16371.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig88486.16371.1 vs. uniprot
Match: D7FUN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN2_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.310e-48
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:    1 MTYTALAAETEVIDSLREVLDGLQGNIRKSLLDMESELIQQSAPPAQYSALQGAASYINHAARSVVTFAINGFNGASEVFDASFEALAEPSRRTLVKSSELFPWHVWYDAWNNLTKGE 354
            MTY ALAAETEVI++LREVLDGLQ NIRKSL DME+EL +Q  PP   S LQGAASY N+ ARS V  AI+GFN AS VFDASFEALAEPSRRTL++S+ELFPW  WY AW N+TKGE
Sbjct:    1 MTYAALAAETEVIENLREVLDGLQSNIRKSLEDMETEL-RQPPPP---SVLQGAASYANNVARSAVAVAIDGFNNASRVFDASFEALAEPSRRTLLRSTELFPWQSWYQAWTNITKGE 114
[Close]
BLAST of mRNA_H-elongata_contig88486.16371.1 vs. uniprot
Match: A0A6H5KN12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN12_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.110e-42
Identity = 84/118 (71.19%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    1 MTYTALAAETEVIDSLREVLDGLQGNIRKSLLDMESELIQQSAPPAQYSALQGAASYINHAARSVVTFAINGFNGASEVFDASFEALAEPSRRTLVKSSELFPWHVWYDAWNNLTKGE 354
            MTYTALAAETEVI++LREVL GLQ NIR+SL DME+EL +Q  PP   S LQGAASY N+ AR  V  AI+GFN AS VFDASFEALAEPSRRTL++S+ELFPW  W+ AW N+TKGE
Sbjct:  631 MTYTALAAETEVIENLREVLAGLQSNIRRSLEDMETEL-RQPPPP---SVLQGAASYANNVARLAVAVAIDGFNNASRVFDASFEALAEPSRRTLLRSTELFPWQTWHQAWTNITKGE 744
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88486.16371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUN2_ECTSI1.310e-4873.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN12_9PHAE1.110e-4271.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88486contigH-elongata_contig88486:19..1594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002070.1
Exons4
Model size354
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88486.16371.1prot_H-elongata_contig88486.16371.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88486 19..1594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931286.5069237-CDS-H-elongata_contig88486:18..521622931286.5069237-CDS-H-elongata_contig88486:18..52Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88486 19..52 -
1691679774.053636-CDS-H-elongata_contig88486:18..521691679774.053636-CDS-H-elongata_contig88486:18..52Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88486 19..52 -
1622931286.5216568-CDS-H-elongata_contig88486:424..5631622931286.5216568-CDS-H-elongata_contig88486:424..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88486 425..563 -
1691679774.067095-CDS-H-elongata_contig88486:424..5631691679774.067095-CDS-H-elongata_contig88486:424..563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88486 425..563 -
1622931286.5346935-CDS-H-elongata_contig88486:816..9251622931286.5346935-CDS-H-elongata_contig88486:816..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88486 817..925 -
1691679774.0756361-CDS-H-elongata_contig88486:816..9251691679774.0756361-CDS-H-elongata_contig88486:816..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88486 817..925 -
1622931286.5503945-CDS-H-elongata_contig88486:1522..15941622931286.5503945-CDS-H-elongata_contig88486:1522..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88486 1523..1594 -
1691679774.0886064-CDS-H-elongata_contig88486:1522..15941691679774.0886064-CDS-H-elongata_contig88486:1522..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88486 1523..1594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88486.16371.1

>prot_H-elongata_contig88486.16371.1 ID=prot_H-elongata_contig88486.16371.1|Name=mRNA_H-elongata_contig88486.16371.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MTYTALAAETEVIDSLREVLDGLQGNIRKSLLDMESELIQQSAPPAQYSA
LQGAASYINHAARSVVTFAINGFNGASEVFDASFEALAEPSRRTLVKSSE
LFPWHVWYDAWNNLTKGE
back to top

mRNA from alignment at H-elongata_contig88486:19..1594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88486.16371.1 ID=mRNA_H-elongata_contig88486.16371.1|Name=mRNA_H-elongata_contig88486.16371.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1576bp|location=Sequence derived from alignment at H-elongata_contig88486:19..1594- (Himanthalia elongata Himel1 dioecious)
ATGACATACACGGCGCTCGCGGCGGAAACAGAAGTCATCGACAGCCTTAG
AGAGGTGTTGGACGGACTCCAGGTGAGAGAGAGAGGGAGGGAAAGAGAGA
GAAGGGGGGGGAGGAGGACCCTGGCGTACTACATCTTGAAGTGTCTCAGC
TTTGGGTATACTGTGCAATGAATCTTCAGTGACACCATATACAACACTAT
ATGACGTTTTATGACTGTGAATGGACAAAGGCTCGCTGATTGTTTCGACG
TTCCCCTTCTGTCCTTCCGCCCTTCCGAGGAACCGCTTCATTTGGAGAAT
ATTTCGGATCGCGGCTGCGATAATGGTCAGCGTGTATTTTGTCCTCCAGA
GCGCGCAACAATGGTTGACGTGTTTTCCCCCCACACACTGTTCCTCCCGA
GGACGCGTGGTCAATGATCTAACATGTAAGACGTGCAAAACTTGAGCCCC
CCCCCCCCCCCCCCCCCCTCCCCCTTTTCTGTCCCTTTTTCTCTTTGCTC
TCTNNNNNNNNNNCCCCCCACTTTCCCTCCCGCGGACTCGGGGTAAATTA
TCTAGAATGAAAGACGGACAAAAATGCTGCCCCCCCCCCCCCCCCTCTCC
TATGTTTCTGCTCATTTTCTCGTTTGCTCTCTCGGCCTTCCTTCCTTCCT
TCTTTTCTTGGCTGAAAAGGGCAATATACGGAAGTCACTGCTGGATATGG
AATCGGAGCTAATACAGCAGTCGGCTCCACCCGCACAGTATAGCGCGTTG
CAGGGCGCGGCTTCGTACATCAACCACGGTGGGTTGAGTTGGAGATTGAG
CCGTGCCGTACGTGAGGGGGGGGGAAGGGGAGGGGATAGTTATCCCTCCT
TCCCTATATATATATCCTGATGTGATGCCCGCTGAAGCACGATCACCGTG
AGCGTATGGACTATCAGCGTTTACGCCTACCTCGCGATTTCCTCGCTCCC
AGTTCGCCTAGAGTGTATGTGCTGTTGTGTTCCATCTCCGTGCTTTTATT
TTTACGTTCGCCTGGTTTGGACTGGAAACAGCGGCGAGGTCGGTGGTGAC
CTTTGCCATCAACGGTTTCAACGGGGCCTCCGAGGTGTTTGACGCTTCCT
TCGAGGCGTTGGCGGAGCCATCCAGGAGGACGCTGGTGAAGTCCTCCGAG
CTGTTCCCGTGGCATGTCTGGTAAGACAAAAAAATATATAGTATCGTTCA
AAAAAACATTTCCTTCCTTACGGCTGTGCCACCGCTCGTATTTTCAATTC
TCTCGGCTGCGAAGGCTGTGCGTACGACGTCACTAGTTTAGATAATACTG
GCGGGTCTAAAAGAGACCTGTCAGGTTGAAATGTTTTGTTTTGGTTTTTG
CAGTCACCACCTTTGGCGTGTGACCATCGTAATATCGGATTATATATCTC
TCGCCGACTCGAGTGAAACATTGTACTCAGATCCACGAATTCAAGATGTT
CAAGTTGACGGGCCTCGATCAGCTCCGGGTGCAGAAAGGTTGAGGTTTAC
TCGAAGCCCTTGCTTACGGCGTTCCCTTTCCGAGCCGAGCAGGTACGACG
CCTGGAACAATTTGACCAAGGGAGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig88486:19..1594-

>mRNA_H-elongata_contig88486.16371.1 ID=mRNA_H-elongata_contig88486.16371.1|Name=mRNA_H-elongata_contig88486.16371.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig88486:19..1594- (Himanthalia elongata Himel1 dioecious)
ATGACATACACGGCGCTCGCGGCGGAAACAGAAGTCATCGACAGCCTTAG
AGAGGTGTTGGACGGACTCCAGATGACATACACGGCGCTCGCGGCGGAAA
CAGAAGTCATCGACAGCCTTAGAGAGGTGTTGGACGGACTCCAGGGCAAT
ATACGGAAGTCACTGCTGGATATGGAATCGGAGCTAATACAGCAGTCGGC
TCCACCCGCACAGTATAGCGCGTTGCAGGGCGCGGCTTCGTACATCAACC
ACGGGCAATATACGGAAGTCACTGCTGGATATGGAATCGGAGCTAATACA
GCAGTCGGCTCCACCCGCACAGTATAGCGCGTTGCAGGGCGCGGCTTCGT
ACATCAACCACGCGGCGAGGTCGGTGGTGACCTTTGCCATCAACGGTTTC
AACGGGGCCTCCGAGGTGTTTGACGCTTCCTTCGAGGCGTTGGCGGAGCC
ATCCAGGAGGACGCTGGTGAAGTCCTCCGAGCTGTTCCCGTGGCATGTCT
GCGGCGAGGTCGGTGGTGACCTTTGCCATCAACGGTTTCAACGGGGCCTC
CGAGGTGTTTGACGCTTCCTTCGAGGCGTTGGCGGAGCCATCCAGGAGGA
CGCTGGTGAAGTCCTCCGAGCTGTTCCCGTGGCATGTCTGGTACGACGCC
TGGAACAATTTGACCAAGGGAGAGGTACGACGCCTGGAACAATTTGACCA
AGGGAGAG
back to top