mRNA_H-elongata_contig88204.16350.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88204.16350.1
Unique NamemRNA_H-elongata_contig88204.16350.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: D7FY84_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY84_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.620e-24
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   10 GPTYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            G TYADMI HAL ++E  KGAF +IC IIE +FS  LNWKLESDVRKTPVW+SSVRKILFSNSR
Sbjct:  433 GATYADMIAHALGKVENGKGAFTQICNIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 496
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BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: G4ZXV6_PHYSP (PHD-type domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZXV6_PHYSP)

HSP 1 Score: 92.4 bits (228), Expect = 1.360e-20
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   16 TYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            TY DMI HAL+ L G KG+F EIC  +EAE+ S LNWKLESD RK+PVW+SSVRKILFSN R
Sbjct:  288 TYGDMIAHALTVLPGGKGSFKEICEFVEAEYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 349
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BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: A0A2P4X1K7_9STRA (PHD-type domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X1K7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.500e-20
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   16 TYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            TY DMI+HAL+ L G KG+F EIC  +E E+ S LNWKLESD RK+PVW+SSVRKILFSN R
Sbjct:  283 TYGDMISHALTVLPGGKGSFKEICDFVETEYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 344
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BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: A0A225VTY5_9STRA (PHD-type domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VTY5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.620e-20
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   16 TYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            TY DMI+HAL+ L G KG+F EIC  +E E+ S LNWKLESD RK+PVW+SSVRKILFSN R
Sbjct:  288 TYGDMISHALTVLPGGKGSFKEICDFVETEYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 349
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BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: A0A6A3SHM3_9STRA (PHD-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SHM3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.620e-20
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   16 TYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            TY DMI HAL+ L G KG+F +IC  +EAE+ S LNWKLESD RK+PVW+SSVRKILFSN R
Sbjct:  288 TYGDMIAHALTVLPGGKGSFKDICDFVEAEYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 349
[Close]
BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: W2QGX9_PHYPN (PHD-type domain-containing protein n=34 Tax=Phytophthora TaxID=4783 RepID=W2QGX9_PHYPN)

HSP 1 Score: 91.7 bits (226), Expect = 3.770e-20
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   16 TYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            TY DMI+HAL+ L G KG+F EIC  +E E+ S LNWKLESD RK+PVW+SSVRKILFSN R
Sbjct:  334 TYGDMISHALTVLPGGKGSFKEICDFVETEYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 395
[Close]
BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: A0A0P1B6Z8_PLAHL (PHD-type domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6Z8_PLAHL)

HSP 1 Score: 91.3 bits (225), Expect = 3.980e-20
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   16 TYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            TY DMI+HAL+ L G KG+F EIC  +E E+ S LNWKLESD RK+PVW+SSVRKILFSN R
Sbjct:  298 TYGDMISHALTVLPGGKGSFKEICDFVEMEYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 359
[Close]
BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: A0A8J2SEZ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEZ6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.110e-20
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   10 GPTYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            G TY+DMI HAL +L  E G F +IC +IE +F   LNWKLESD+RKTPVW+SSVRKIL+SN+R
Sbjct:  560 GATYSDMIAHALKKLPDEHGDFKDICKVIEQDFFEQLNWKLESDLRKTPVWKSSVRKILYSNAR 623
[Close]
BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: A0A067BXK9_SAPPC (PHD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BXK9_SAPPC)

HSP 1 Score: 87.0 bits (214), Expect = 6.880e-20
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   16 TYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            TY DMI+HAL  +   +G F +IC  IEA++ S LNWKLESD RK+PVW+SSVRKILFSNSR
Sbjct:   94 TYGDMISHALRSMPRGEGTFKDICEYIEAQYESQLNWKLESDQRKSPVWKSSVRKILFSNSR 155
[Close]
BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Match: A0A3R7JYC0_9STRA (PHD-type domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JYC0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.620e-19
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   16 TYADMITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVRKILFSNSR 201
            TY DMI+HAL+ L   KG+F EIC  +E E+ S LNWKLESD RK+PVW+SSVRKILFSN R
Sbjct:  242 TYGDMISHALAILPDGKGSFKEICDFVETEYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 303
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88204.16350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY84_ECTSI1.620e-2476.56SGF29 C-terminal domain-containing protein n=2 Tax... [more]
G4ZXV6_PHYSP1.360e-2070.97PHD-type domain-containing protein n=1 Tax=Phytoph... [more]
A0A2P4X1K7_9STRA2.500e-2069.35PHD-type domain-containing protein n=1 Tax=Phytoph... [more]
A0A225VTY5_9STRA2.620e-2069.35PHD-type domain-containing protein n=1 Tax=Phytoph... [more]
A0A6A3SHM3_9STRA2.620e-2069.35PHD-type domain-containing protein n=4 Tax=Phytoph... [more]
W2QGX9_PHYPN3.770e-2069.35PHD-type domain-containing protein n=34 Tax=Phytop... [more]
A0A0P1B6Z8_PLAHL3.980e-2069.35PHD-type domain-containing protein n=1 Tax=Plasmop... [more]
A0A8J2SEZ6_9STRA6.110e-2065.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A067BXK9_SAPPC6.880e-2066.13PHD domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A3R7JYC0_9STRA1.620e-1967.74PHD-type domain-containing protein n=4 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88204contigH-elongata_contig88204:139..1309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue9.5e-18
Seed eggNOG ortholog2880.D7FY84
EggNOG OGs2CZEN@1,2SA0N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88204.16350.1prot_H-elongata_contig88204.16350.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88204 139..1282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931283.7646832-CDS-H-elongata_contig88204:138..2201622931283.7646832-CDS-H-elongata_contig88204:138..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88204 139..220 -
1691679772.762825-CDS-H-elongata_contig88204:138..2201691679772.762825-CDS-H-elongata_contig88204:138..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88204 139..220 -
1622931283.78059-CDS-H-elongata_contig88204:1172..12821622931283.78059-CDS-H-elongata_contig88204:1172..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88204 1173..1282 -
1691679772.777931-CDS-H-elongata_contig88204:1172..12821691679772.777931-CDS-H-elongata_contig88204:1172..1282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88204 1173..1282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931283.80041-UTR-H-elongata_contig88204:1282..13091622931283.80041-UTR-H-elongata_contig88204:1282..1309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88204 1283..1309 -
1691679772.7886045-UTR-H-elongata_contig88204:1282..13091691679772.7886045-UTR-H-elongata_contig88204:1282..1309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88204 1283..1309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88204.16350.1

>prot_H-elongata_contig88204.16350.1 ID=prot_H-elongata_contig88204.16350.1|Name=mRNA_H-elongata_contig88204.16350.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MITHALSRLEGEKGAFVEICGIIEAEFSSVLNWKLESDVRKTPVWRSSVR
KILFSNSRSVSAA*
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mRNA from alignment at H-elongata_contig88204:139..1309-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88204.16350.1 ID=mRNA_H-elongata_contig88204.16350.1|Name=mRNA_H-elongata_contig88204.16350.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1171bp|location=Sequence derived from alignment at H-elongata_contig88204:139..1309- (Himanthalia elongata Himel1 dioecious)
AAGAAAGTCGGACCAACCTATGCGGACATGATCACGCACGCGCTCTCGCG
GTTGGAAGGCGAGAAGGGAGCTTTTGTAGAAATCTGTGGGATCATTGAGG
CTGAGTTCTCCAGTGTGTTGAACTGGAAGCTTGAAAGGTGACAAACCATA
TATTAATATTTAGTCTAGACCACTATATGATACTTCTTTAAGTAAGAGCA
CTACTTATTATAGACTATAAACTATAGACTACCTAGTACTGTAGATAGTA
AGATTGACTGTGTAGTATATAGACTATAAACTATAGACTACCTAGTACTG
TATATAGTAAGATTGACTATGTAGTATATAGACTATAAACTATAGACTAC
CTAGTACTGTATATAGTAAGATTGACTATGTAGTATATATACTATAAACT
ATAGACTACCTAGTACTGTATATAGTAAGATTGACTATGTAGTATAGACT
ATAAACTATAGACTACCCAGTACTGTATATAGTAAGATTGACTATGTAGT
ATATAGACTATAAACTATAGACTACCTAGTACTGTATATAGTAAGATTGA
CTCCCCCTTGCTCCATCGATACACCTGGATAATATATTATGTTTTTTTTC
TGGGACGTATCGATTGAAATTGGTGTGCTCTCCCGTGGGACTTCTTCGCC
AAAATCGTGGAATTGGTGCAGGAATGAGTAGATTTTGGCAGAACTCCCTC
CCCCGCTTACGAGGTCCAATGAAAGCATGTTAGCAGTGGTGGGGCAAATT
ATTGATAGGGTTTCCATGTATGTAGGCGCACCAAAGATCGGGTGAGAGGG
GTAGAGGGGGTCGTTCCCCCGAATCCCTCTCCTCCACTGGTTCAAAAGGA
ATCGATGTTGGCATGCATCCACCGGTGTGTACAGTATGTGCGTGTGTGTG
TAAAATGTGCATTTTGTGCAATTATTTCTAAAACTAATTATTATATTATT
TTTAATTTATATTCGTTTTTAATTTTATAAACACGTACCCATATGTTTAT
TAATGTTTCCATATGTTTATTAATGTTTCTTTTTTCGTTCACAATTTTTT
TCTTTTGATTTTCTTTTCGCCCTTCTCGATGAACGACAGTGACGTCCGTA
AAACGCCTGTCTGGAGATCTTCTGTGAGAAAGATTCTTTTCTCCAACAGC
AGGTCGGTGTCCGCAGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig88204:139..1309-

>mRNA_H-elongata_contig88204.16350.1 ID=mRNA_H-elongata_contig88204.16350.1|Name=mRNA_H-elongata_contig88204.16350.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig88204:139..1309- (Himanthalia elongata Himel1 dioecious)
ATGATCACGCACGCGCTCTCGCGGTTGGAAGGCGAGAAGGGAGCTTTTGT
AGAAATCTGTGGGATCATTGAGGCTGAGTTCTCCAGTGTGTTGAACTGGA
AGCTTGAAAGATGATCACGCACGCGCTCTCGCGGTTGGAAGGCGAGAAGG
GAGCTTTTGTAGAAATCTGTGGGATCATTGAGGCTGAGTTCTCCAGTGTG
TTGAACTGGAAGCTTGAAAGTGACGTCCGTAAAACGCCTGTCTGGAGATC
TTCTGTGAGAAAGATTCTTTTCTCCAACAGCAGGTCGGTGTCCGCAGCAT
AATGACGTCCGTAAAACGCCTGTCTGGAGATCTTCTGTGAGAAAGATTCT
TTTCTCCAACAGCAGGTCGGTGTCCGCAGCATAA
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