mRNA_H-elongata_contig88096.16335.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88096.16335.1
Unique NamemRNA_H-elongata_contig88096.16335.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: D8LS40_ECTSI (Rab50, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS40_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 8.040e-73
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 1
Query:    7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKV 372
            L  + +A+DGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGK+VLAIACTKTDMESKRVVSRARAE F +EVGGI+CETSAKENWGV+ELF +V
Sbjct:   50 LTKQITATDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKLVLAIACTKTDMESKRVVSRARAEHFATEVGGIICETSAKENWGVNELFARV 171          
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S2XTR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTR6_9STRA)

HSP 1 Score: 194 bits (492), Expect = 7.440e-61
Identity = 90/123 (73.17%), Postives = 104/123 (84.55%), Query Frame = 1
Query:    7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
            L  +     G  CKMQIWDTAGQERFRAMAP+YYRNAA A+VCFDI DE+SF KMKDWVEEL+TNVPEGK+VLAIAC KTD+ES RVVSRARAEQ+++ +  I CETSAKENWGV+E+F KV+
Sbjct:   50 LTKKIQTEGGVNCKMQIWDTAGQERFRAMAPMYYRNAAAAIVCFDITDEDSFTKMKDWVEELKTNVPEGKLVLAIACNKTDLESNRVVSRARAEQYSAAIKAIYCETSAKENWGVNEIFEKVS 172          
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S3Y4J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4J2_HETAK)

HSP 1 Score: 187 bits (474), Expect = 1.590e-57
Identity = 84/113 (74.34%), Postives = 99/113 (87.61%), Query Frame = 1
Query:   25 ASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELF 363
            A+DGT CKMQIWDTAGQERFRAMA +YYRNAA A+VCFDI DEESF KMKDWV+EL+ NVPEG++VLAIA TKTD+E++R VSR RAEQ+   +G + CETSAKENWGV+E+F
Sbjct:   57 AADGTACKMQIWDTAGQERFRAMASMYYRNAAAAIVCFDITDEESFSKMKDWVQELKANVPEGRLVLAIAATKTDLEAQRAVSRGRAEQYAQSIGALCCETSAKENWGVTEVF 169          
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S2BGJ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGJ2_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.480e-50
Identity = 80/123 (65.04%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
            L  +    DG++CK+QIWDTAGQERFRAMAP+YYRNAA A+VCFDI DE SF  MKDWV+ELR N  +  ++LAIAC K D+ S RVVSR RAE F S +  IL +TSAKEN GV+ELF KVT
Sbjct:   45 LTKKVQLEDGSMCKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDITDENSFSTMKDWVQELRRNCQDRDLILAIACNKADLSSTRVVSRERAESFASSIKAILMDTSAKENEGVNELFQKVT 167          
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A835ZBF8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF8_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.460e-49
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 1
Query:   31 DGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAI--ACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELF 363
            +G +CK+QIWDTAGQERFRAMAP+YYRNAA A+VC DI DEESF KMKDWVEE++ NVP G+  LAI  A  KTD+E +RVVSRARAE+F + +G  + ETSA+ENWGV+ LF
Sbjct:   46 NGVLCKLQIWDTAGQERFRAMAPMYYRNAAAAIVCCDITDEESFDKMKDWVEEIKMNVPVGQQGLAIVLALNKTDLEERRVVSRARAEEFAASIGAAVVETSARENWGVARLF 158          
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S3NK22_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK22_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.080e-47
Identity = 76/123 (61.79%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
            L  +   S+G  CK+QIWDTAGQERFRAMAP+YYRNAA A+VCFD+ DE +F  MKDWVEEL+TNV +  +V+AIAC K D+++++V SRARAE F   +  I+ +TSAKEN+GVSELFT V+
Sbjct:   53 LTKKIVTSNGDACKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDVTDESTFNTMKDWVEELKTNVVDKNLVIAIACNKADLDTRQV-SRARAESFARSIDAIILDTSAKENFGVSELFTAVS 174          
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: F0XY01_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY01_AURAN)

HSP 1 Score: 159 bits (401), Expect = 1.240e-46
Identity = 74/123 (60.16%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
            L  +   + G  CK+QIWDTAGQERFRAMAP+YYRNAA A+VCFD+ DE +F  MKDWVEEL+TNV +  +V+AIAC K D+++++V SRARAEQF   +  I+ +TSAKEN+GV+ELF  V+
Sbjct:   48 LTKKIVTAQGDACKIQIWDTAGQERFRAMAPMYYRNAAAAIVCFDVTDESTFNTMKDWVEELKTNVVDKNLVIAIACNKADLDTRQV-SRARAEQFARSISAIVLDTSAKENFGVAELFAAVS 169          
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A7S3ZPM5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPM5_9STRA)

HSP 1 Score: 141 bits (355), Expect = 9.710e-40
Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1
Query:    7 LVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVG-GILCETSAKENWGVSELFTKV 372
            L  +   + G  CK+QIWDTAGQERFRAMAP+YYRNAA AVVCFD  D+ +FQ M+ WVEELR NV + K+V+AIA TK+D++  R  +R +AE+F S +   ++ ETSAK + GV ELF  V
Sbjct:   53 LTKKIKTARGDDCKIQIWDTAGQERFRAMAPMYYRNAAAAVVCFDGTDQRTFQTMRTWVEELRANVDDKKLVIAIAITKSDLDENRAETRRKAEEFASSINDALVLETSAKNDVGVRELFATV 175          
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A0M0LQE4_9EUKA (Gtp-binding protein rab11 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQE4_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 4.300e-37
Identity = 63/108 (58.33%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   49 MQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKV 372
            +QIWDTAGQERFR+MAPLYYR A  A++ F I DE SF+K+K+WV EL++NV E  +VLAIAC K D+  +R+VS   A+Q+ S +G ++ ETSAK N GVS+LF +V
Sbjct:   64 LQIWDTAGQERFRSMAPLYYRGAVAAILVFSITDEASFEKLKEWVRELQSNVDEP-LVLAIACNKADLADQRIVSMETAQQYASSIGALIYETSAKSNTGVSQLFNEV 170          
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Match: A0A8J5XZ05_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XZ05_DIALT)

HSP 1 Score: 130 bits (326), Expect = 1.410e-35
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1
Query:   31 DGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMDEESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTSEVGGILCETSAKENWGVSELFTKVT 375
            +G    +QIWDTAGQERFR+MAPLYYR A  A++ FDI ++ SF KMK+WV EL+ NV E  +VLAIAC K D+  +RVV   +A Q+ +++G I+ ETSAKEN GV  LF  V+
Sbjct:   51 NGQKITLQIWDTAGQERFRSMAPLYYRGAVAAILVFDITNDVSFDKMKEWVRELQANVEEP-LVLAIACNKADLREQRVVQFEQAAQYAAKIGAIIVETSAKENVGVDALFMDVS 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88096.16335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS40_ECTSI8.040e-7388.52Rab50, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2XTR6_9STRA7.440e-6173.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3Y4J2_HETAK1.590e-5774.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BGJ2_9STRA5.480e-5065.04Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZBF8_9STRA3.460e-4968.14P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3NK22_9STRA1.080e-4761.79Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0XY01_AURAN1.240e-4660.16Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3ZPM5_9STRA9.710e-4056.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0M0LQE4_9EUKA4.300e-3758.33Gtp-binding protein rab11 n=1 Tax=Chrysochromulina... [more]
A0A8J5XZ05_DIALT1.410e-3555.65Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88096contigH-elongata_contig88096:1183..2179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.5
Seed ortholog evalue7.1e-57
Seed eggNOG ortholog2880.D8LS40
KEGG koko:K07893,ko:K07976
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0092@1,KOG0092@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab50, RAB family GTPase
Ec32 orthologEc-12_004900.1
Exons2
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931281.871845-CDS-H-elongata_contig88096:1182..13231622931281.871845-CDS-H-elongata_contig88096:1182..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88096 1183..1323 -
1691679771.9883382-CDS-H-elongata_contig88096:1182..13231691679771.9883382-CDS-H-elongata_contig88096:1182..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88096 1183..1323 -
1622931281.8848267-CDS-H-elongata_contig88096:1936..21791622931281.8848267-CDS-H-elongata_contig88096:1936..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88096 1937..2179 -
1691679771.9992828-CDS-H-elongata_contig88096:1936..21791691679771.9992828-CDS-H-elongata_contig88096:1936..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88096 1937..2179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88096.16335.1prot_H-elongata_contig88096.16335.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88096 1183..2179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88096.16335.1

>prot_H-elongata_contig88096.16335.1 ID=prot_H-elongata_contig88096.16335.1|Name=mRNA_H-elongata_contig88096.16335.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
ARLVSRRSASDGTICKMQIWDTAGQERFRAMAPLYYRNAAVAVVCFDIMD
EESFQKMKDWVEELRTNVPEGKIVLAIACTKTDMESKRVVSRARAEQFTS
EVGGILCETSAKENWGVSELFTKVTGC*
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mRNA from alignment at H-elongata_contig88096:1183..2179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88096.16335.1 ID=mRNA_H-elongata_contig88096.16335.1|Name=mRNA_H-elongata_contig88096.16335.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=997bp|location=Sequence derived from alignment at H-elongata_contig88096:1183..2179- (Himanthalia elongata Himel1 dioecious)
GCACGCCTCGTTTCACGCCGCAGCGCGTCGGACGGCACGATCTGCAAGAT GCAGATATGGGATACGGCCGGTCAAGAGCGCTTCCGCGCGATGGCTCCGC TCTACTACCGAAACGCCGCCGTCGCCGTGGTGTGCTTCGATATCATGGAC GAGGAGTCGTTCCAGAAGATGAAAGACTGGGTGGAGGAGCTCAGAACGAA CGTACCGGAGGGGAAGATCGTGCTGGCTATTGCTTGCACGAAGGTGAGAA GGCCTGTCAAATCTGTCGGGGGCGCGCAGGTAAAGATTAAATATCCTTGC CTATGCTTCCCCATCGTCCCGTCCCCCTGCATGCTGCCACTGTGTGCTGC TGCTGCCGAACGGAAATGGACATCTCAGATTCTGTGGGGTAATTCTATGA AACTCACTTTTTACATTCTTGCTCTAGCAATGGCGCAGAATCCAATGGCA TAAAAATACATTGCGGCGATCCAAGTTTTCAGTGATCGCCTGGGTACCAG CAGTTTTGACGTGAGAAACAAGGGCAGTAGATAGCGCCATGAGGTCCAGG TAGGATATTCACCGAAGACAATAAACTAAGGCCCTGGGTTGCCAGTTGAT CACTCCATTCGGTGGCGTTCGACTTCCATCGAGAGGGTTTGGGAAAGATT GGTTCTCACAGTTTTGTAGCGCCGTCTAAAGTCATCAGCAGCAGCAGTTT GGCCTCAACTATCCTCTCCGAAACAGCGCAATGTTGCCAGATTCATGCGT AACCTCGTGGTCGTCCGATCGATGCGCACCGCTCGGACGACCGTCCGCGC TTTCGTTTACCTGCTTTACCATATTGTTTTACTGATAACGAATCCAATTC GAGCAGACCGACATGGAGAGCAAGCGAGTCGTTTCGAGAGCACGGGCGGA GCAGTTTACATCAGAAGTTGGGGGAATTTTGTGCGAGACCAGCGCAAAGG AGAACTGGGGCGTAAGCGAGCTCTTCACAAAGGTAACGGGTTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig88096:1183..2179-

>mRNA_H-elongata_contig88096.16335.1 ID=mRNA_H-elongata_contig88096.16335.1|Name=mRNA_H-elongata_contig88096.16335.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig88096:1183..2179- (Himanthalia elongata Himel1 dioecious)
GCACGCCTCGTTTCACGCCGCAGCGCGTCGGACGGCACGATCTGCAAGAT
GCAGATATGGGATACGGCCGGTCAAGAGCGCTTCCGCGCGATGGCTCCGC
TCTACTACCGAAACGCCGCCGTCGCCGTGGTGTGCTTCGATATCATGGAC
GAGGAGTCGTTCCAGAAGATGAAAGACTGGGTGGAGGAGCTCAGAACGAA
CGTACCGGAGGGGAAGATCGTGCTGGCTATTGCTTGCACGAAGGCACGCC
TCGTTTCACGCCGCAGCGCGTCGGACGGCACGATCTGCAAGATGCAGATA
TGGGATACGGCCGGTCAAGAGCGCTTCCGCGCGATGGCTCCGCTCTACTA
CCGAAACGCCGCCGTCGCCGTGGTGTGCTTCGATATCATGGACGAGGAGT
CGTTCCAGAAGATGAAAGACTGGGTGGAGGAGCTCAGAACGAACGTACCG
GAGGGGAAGATCGTGCTGGCTATTGCTTGCACGAAGACCGACATGGAGAG
CAAGCGAGTCGTTTCGAGAGCACGGGCGGAGCAGTTTACATCAGAAGTTG
GGGGAATTTTGTGCGAGACCAGCGCAAAGGAGAACTGGGGCGTAAGCGAG
CTCTTCACAAAGGTAACGGGTTGCTGAACCGACATGGAGAGCAAGCGAGT
CGTTTCGAGAGCACGGGCGGAGCAGTTTACATCAGAAGTTGGGGGAATTT
TGTGCGAGACCAGCGCAAAGGAGAACTGGGGCGTAAGCGAGCTCTTCACA
AAGGTAACGGGTTGCTGA
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