mRNA_H-elongata_contig87742.16306.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87742.16306.1
Unique NamemRNA_H-elongata_contig87742.16306.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87742.16306.1 vs. uniprot
Match: D7FK18_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK18_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.500e-35
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 GTAEWPESLAPVAWHKDAKMARLKLGLYHKTNQVADGEVEYRNIRIKGPNGQIRTSPKAEPAGTLYRGCFEDKANDRVLGEKYIIDAHMTNEV 279
            G A WP +L PVAWH+DA   R+KLGLYHKT+QV DG+VEYR+I I+GPNG IRTSP+ +  G LY GCF D  +D V   K  +DAHMTNE+
Sbjct:   53 GRAVWPSNLKPVAWHRDADRVRMKLGLYHKTDQVYDGKVEYRDISIEGPNGIIRTSPEPDHEGHLYVGCFADDDDDHVFSGKKYVDAHMTNEM 145
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BLAST of mRNA_H-elongata_contig87742.16306.1 vs. uniprot
Match: A0A6H5KAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW5_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.990e-32
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 GTAEWPESLAPVAWHKDAKMARLKLGLYHKTNQVADGEVEYRNIRIKGPNGQIRTSPKAEPAGTLYRGCFEDKANDRVLGEKYIIDAHMTNEV 279
            G A WP +L PVAWH+DA   R+KLGLYHK +QV DG+VEYR+I I+GPNG IRTSP+ +  G LY GCF D  +D V   K  +DAHMTNE+
Sbjct:  200 GRAVWPSNLKPVAWHRDADRVRMKLGLYHKIDQVYDGKVEYRDISIEGPNGIIRTSPEPDHEGHLYVGCFADDDDDHVFSGKKYVDAHMTNEM 292
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BLAST of mRNA_H-elongata_contig87742.16306.1 vs. uniprot
Match: D8LDJ9_ECTSI (Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ9_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 9.540e-29
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 GTAEWPESLAPVAWHKDAKMARLKLGLYHKTNQVADGEVEYRNIRIKGPNGQIRTSPKAEPA---------GTLYRGCFEDKANDRVLGEKYIIDAHMTNEV 279
            G   WP+   PVAW+   KMAR+KLGLYHK  QV DGEVE R++ I+GPNG IRTSP+  P+         G LY GCFED+ + R+ G+KY+ DAHMT  +
Sbjct:  229 GKFVWPKDKTPVAWNNKGKMARMKLGLYHKEEQVGDGEVEIRDVSIEGPNGIIRTSPEESPSPSSKENDSKGHLYLGCFEDEKDKRIFGKKYV-DAHMTTAI 329
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BLAST of mRNA_H-elongata_contig87742.16306.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.550e-20
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 GTAEWPESLAPVAWHKDAKMARLKLGLYHKTNQVADGEVEYRNIRIKGPNGQIRTSPKAE-----PAGTLYRGCFEDKANDRVLGEKY 249
            G A WP S  PVAW+ DA     KLGLYH  N+VADGEVEY+NI I+GPNG +RTS   +     P G +  GC +D  +DR+L   Y
Sbjct:  223 GKAVWPSSYKPVAWNDDADTIMFKLGLYHIKNKVADGEVEYKNISIQGPNGLLRTSSVGDSDHGPPQGIMSLGCVKDADHDRLLDNIY 310
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BLAST of mRNA_H-elongata_contig87742.16306.1 vs. uniprot
Match: A0A6H5JXY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.080e-19
Identity = 45/88 (51.14%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    1 GTAEWPESLAPVAWHKDAKMARLKLGLYHKTNQVADGEVEYRNIRIKGPNGQIRTSPKAE-----PAGTLYRGCFEDKANDRVLGEKY 249
            G A WP S  PVAW  DA     KLGLYH  N+VADGEVEY+NI I+GPNG +RTS   +     P G    GC +D  +DR+L   Y
Sbjct:  444 GKAVWPSSYKPVAWSDDADTIMFKLGLYHIKNKVADGEVEYKNISIQGPNGLLRTSSVGDINHGPPQGITSLGCAKDARHDRLLDNIY 531
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BLAST of mRNA_H-elongata_contig87742.16306.1 vs. uniprot
Match: A0A6H5K5S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.140e-16
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 GTAEWPESLAPVAWHKDAKMARLKLGLYHKTNQVADGEVEYRNIRIKGPNGQIRTSPK 174
            G   WP+   PVAW+   KMAR+KLGLYHK  QV DGEVE R++ I+GPNG IRTSP+
Sbjct:  266 GKFVWPKDKTPVAWNNKGKMARMKLGLYHKEEQVGDGEVEIRDVSIEGPNGIIRTSPE 323
[Close]
BLAST of mRNA_H-elongata_contig87742.16306.1 vs. uniprot
Match: A0A6H5JBB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.180e-7
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:   97 QVADGEVEYRNIRIKGPNGQIRTSPKAE-----PAGTLYRGCFEDKANDRVLGEKY 249
            +VADGEVEY+NI I+GPNG +RTS   +     P G    GC +D  +DR+L   Y
Sbjct:  573 KVADGEVEYKNISIQGPNGLLRTSSVGDINHRPPQGITSLGCVKDARHDRLLDNIY 628
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87742.16306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FK18_ECTSI5.500e-3561.29WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAW5_9PHAE2.990e-3260.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDJ9_ECTSI9.540e-2952.94Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
D8LDH3_ECTSI1.550e-2051.14WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JXY2_9PHAE1.080e-1951.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5S3_9PHAE1.140e-1662.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBB3_9PHAE4.180e-748.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87742contigH-elongata_contig87742:311..1138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D8LDH3
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931278.5308297-CDS-H-elongata_contig87742:310..4611622931278.5308297-CDS-H-elongata_contig87742:310..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87742 311..461 +
1691679770.8474326-CDS-H-elongata_contig87742:310..4611691679770.8474326-CDS-H-elongata_contig87742:310..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87742 311..461 +
1622931278.546219-CDS-H-elongata_contig87742:1004..11381622931278.546219-CDS-H-elongata_contig87742:1004..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87742 1005..1138 +
1691679770.8673785-CDS-H-elongata_contig87742:1004..11381691679770.8673785-CDS-H-elongata_contig87742:1004..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87742 1005..1138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87742.16306.1prot_H-elongata_contig87742.16306.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87742 311..1138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87742.16306.1

>prot_H-elongata_contig87742.16306.1 ID=prot_H-elongata_contig87742.16306.1|Name=mRNA_H-elongata_contig87742.16306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
GTAEWPESLAPVAWHKDAKMARLKLGLYHKTNQVADGEVEYRNIRIKGPN
GQIRTSPKAEPAGTLYRGCFEDKANDRVLGEKYIIDAHMTNEVR*
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mRNA from alignment at H-elongata_contig87742:311..1138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87742.16306.1 ID=mRNA_H-elongata_contig87742.16306.1|Name=mRNA_H-elongata_contig87742.16306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=828bp|location=Sequence derived from alignment at H-elongata_contig87742:311..1138+ (Himanthalia elongata Himel1 dioecious)
GGCACAGCTGAGTGGCCAGAAAGCCTGGCGCCTGTCGCGTGGCACAAAGA
TGCTAAGATGGCGCGCCTAAAGCTCGGGCTCTACCACAAAACGAACCAAG
TAGCAGACGGCGAAGTAGAGTACCGGAACATCCGTATCAAGGGCCCCAAC
GGTAAGCAAGGGAAATGAAAGGTAGAGGGAAATACTCATCTTATCTGTAG
ACATAGTTAGTTCCCGGCATCTTGTCGTCTCTGTCGTCTTCATCCCTCCA
TCTCCATCCACCCGCCGGAAGCTTTACCCTCCTCAGGTGTTGTCTGCGGA
CAGTATGTTCGTGAGACTAGGAACAGATTATGAGATGAGGAATGGGGAAA
TTTTTGAACTAAGCGTGTTTTTTCTATGTTCGGGAGATTTAAAACGAATC
ATAAAATAAGAGATGGGGATTTTTTTATTCCTTATCTCATAATCCGTTCC
CAGTCTCACAAACATACGACATACATCATACATCATACATTATACAGTTA
TTAATACATTTAGTTGCCCACTTTACTCTATATCACCAGGGAACGTGGTA
CGGAGACTAACAGAAAAAACAAAATAGCCTCTATAACGCGAGGACAAGCC
ACGAGAGACTGTAAATTGTAGGTAAGTTGGAACTGCGGATTGTATTTCGA
GCCGACCACGCTGCTGCCTGCCTGCTGCTAATATTACCATGAAGGGCAAA
TCCGAACCTCCCCGAAAGCCGAACCTGCCGGTACCCTTTACCGTGGTTGC
TTCGAGGACAAGGCAAACGATCGAGTATTGGGCGAAAAGTATATCATCGA
CGCGCATATGACGAACGAGGTGAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig87742:311..1138+

>mRNA_H-elongata_contig87742.16306.1 ID=mRNA_H-elongata_contig87742.16306.1|Name=mRNA_H-elongata_contig87742.16306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig87742:311..1138+ (Himanthalia elongata Himel1 dioecious)
GGCACAGCTGAGTGGCCAGAAAGCCTGGCGCCTGTCGCGTGGCACAAAGA
TGCTAAGATGGCGCGCCTAAAGCTCGGGCTCTACCACAAAACGAACCAAG
TAGCAGACGGCGAAGTAGAGTACCGGAACATCCGTATCAAGGGCCCCAAC
GGGCACAGCTGAGTGGCCAGAAAGCCTGGCGCCTGTCGCGTGGCACAAAG
ATGCTAAGATGGCGCGCCTAAAGCTCGGGCTCTACCACAAAACGAACCAA
GTAGCAGACGGCGAAGTAGAGTACCGGAACATCCGTATCAAGGGCCCCAA
CGGGCAAATCCGAACCTCCCCGAAAGCCGAACCTGCCGGTACCCTTTACC
GTGGTTGCTTCGAGGACAAGGCAAACGATCGAGTATTGGGCGAAAAGTAT
ATCATCGACGCGCATATGACGAACGAGGTGAGATGAGGCAAATCCGAACC
TCCCCGAAAGCCGAACCTGCCGGTACCCTTTACCGTGGTTGCTTCGAGGA
CAAGGCAAACGATCGAGTATTGGGCGAAAAGTATATCATCGACGCGCATA
TGACGAACGAGGTGAGATGA
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