mRNA_H-elongata_contig8760.16293.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: D8LJ20_ECTSI (Mitochondrial carrier protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ20_ECTSI) HSP 1 Score: 227 bits (579), Expect = 1.070e-66 Identity = 131/238 (55.04%), Postives = 163/238 (68.49%), Query Frame = 1
Query: 226 EIPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTT-RKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRLALARKAGPNAKDVRA 936
++PR + +C+AA LGDMTG+LWLVP EVVKVQ+QGG HAT+ +A +SIFR G+ GFYQGF GQV RDVPFR IQLT+YELLR + T R+R T AT + G + RA G G A G++G + ++S+ DAALLG AGA+SA TCPLDV+RTRLM VGGG A+TWA AI GGL +G+GTR+FYIG S A FFVVYEA+K RL + + P A +A
Sbjct: 126 QLPRAITFCLAAVLGDMTGSLWLVPSEVVKVQMQGGLHATVGQAAMSIFRKSGVGGFYQGFSGQVGRDVPFRAIQLTSYELLRTLLKTWRRRQHTGVATERGDDSGGVPVGRARG--GVATAAAGDDG--EHAALSSGDAALLGGLAGAISATFTCPLDVVRTRLM--------VGGGGGAAETWAAAIKAGGLLSGLGTRVFYIGTSSAVFFVVYEAIKVRLGVVAASSPPAATSKA 351
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A6V1WYU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WYU8_HETAK) HSP 1 Score: 118 bits (296), Expect = 2.350e-26 Identity = 84/223 (37.67%), Postives = 119/223 (53.36%), Query Frame = 1
Query: 226 EIPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQ--GGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQG--GLFAGIGTRIFYIGASGATFFVVYEAMK 882
+ + Y ++A LGD+TG+ WLVP E+VK+++Q GG +A I G GFY+G+ GQ+ RDVPFR IQLTTYE L+ + R RN+ A G D EG E G +S + A+LG+ AG+ SA +T PLDVI+TR+M G G G + + T A +G ++ G+ R+ Y+G S A FF+ YE +K
Sbjct: 69 NVSKTFTYFISAILGDITGSFWLVPSEIVKLRLQSGGGGGLGLAGTIGDILATSGPGGFYKGYTGQIARDVPFRAIQLTTYETLKTLYS-RLRNARRVAAGLDPL-------------------EGAEAGK----LSGLEGAVLGAVAGSFSAGVTTPLDVIKTRMMMG----GGAAGRSVLDVTRALVEKEGPMAVWKGLVPRVTYVGPSVAIFFMTYEVVK 263
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A7S2V2B5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2B5_9STRA) HSP 1 Score: 120 bits (302), Expect = 4.220e-26 Identity = 84/222 (37.84%), Postives = 117/222 (52.70%), Query Frame = 1
Query: 229 IPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLS-IFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRL 891
I + Y +AAC+GD+TG+ WLVP EVVK ++Q G+ + T+S ++R GL GFY G+ Q+ RDVPFR IQL +YE ++ A + N RR +E EE +S + +LG+ AG+ SA T PLDVI+TR+M A S V VA + + G GLF G+G R+ YI S A FF YE ++ R+
Sbjct: 257 INQTFIYLIAACMGDITGSFWLVPSEVVKQKMQTGAMSQGLGGTVSAVWREKGLGGFYAGYSSQISRDVPFRAIQLVSYETVKSAYLRWRSN----------------------RRAAAGLKEQEE-------LSGVEGVILGAIAGSFSAACTTPLDVIKTRMMTEATGQSVVE----VASSLLQSGGVQGLFRGLGARVGYIAPSAAIFFCTYELVRQRI 445
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: M2Y040_GALSU (Mitochondrial carrier (BOU / S-adenosylmethionine carrier) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y040_GALSU) HSP 1 Score: 114 bits (286), Expect = 1.080e-24 Identity = 82/220 (37.27%), Postives = 114/220 (51.82%), Query Frame = 1
Query: 253 VAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGA---IGQGGLFA---GIGTRIFYIGASGATFFVVYEAMKTRLA 894
+AA +GD+TG+LWL P EVVK ++Q G ++ +A IF GL GFYQG+ GQ+ RD+PFR IQL +YE LR K+ S+ +S + ++G +G+++A +T PLDV++TRLM GV A+ + W A + GL A G+G R+FYIG SGA FFVVYE MK L+
Sbjct: 155 LAAIMGDLTGSLWLCPSEVVKSRLQAGQYSNTLDAIRKIFMTQGLKGFYQGYVGQIARDIPFRAIQLLSYEELRWRYRQWKKLSS------------------------------------IEDLSNIENLVIGLVSGSVTAAVTTPLDVLKTRLMT---QPIGVSTIAY-SSAWDCARQLVQHEGLQAFWKGLGPRVFYIGPSGAIFFVVYEGMKRMLS 334
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A5J4YTC7_PORPP (S-adenosylmethionine carrier 1, chloroplastic/mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTC7_PORPP) HSP 1 Score: 114 bits (285), Expect = 2.730e-24 Identity = 83/243 (34.16%), Postives = 114/243 (46.91%), Query Frame = 1
Query: 229 IPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAI-------GQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRLALARKAGPNAKDVRA 936
+P + + ACLGD+TG+LWL P E +K +Q G H ++ EA ++N GL GFYQG+ GQ+ RDVPFR IQL+ YE ++ ARA K D ++G+ AG++S+V+T PLDVI+TRLM + GG A V + + G G L G+ R+ YI S A FF VYEA + R A + RA
Sbjct: 133 MPSELRVMLGACLGDLTGSLWLCPAERIKQTLQSGVHGSVLEAVRKTYKNGGLPGFYQGYSGQIGRDVPFRIIQLSVYEKIKAM-----------------------YARAY---------------LKEREAVTTDNLIIGALAGSISSVLTAPLDVIKTRLM------TDQGGSARVYKNALDCVVKIVRAEGPGVLARGVVPRVIYITPSVAIFFAVYEATLRFIRNRRAAADPSAATRA 331
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A1X6PJV1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJV1_PORUM) HSP 1 Score: 113 bits (283), Expect = 5.640e-24 Identity = 82/222 (36.94%), Postives = 112/222 (50.45%), Query Frame = 1
Query: 226 EIPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRL 891
+P AA +GD+TG+LWL P E++K ++Q G ++ G FYQG+ QV RDVPFR IQL TYE LR A K A+ G+A+A ++VS + LLG+AAG+ +A +T PLDV++TR+M A + VGG V + G GL G+G R+ YIG S A FF V+E +K RL
Sbjct: 149 RLPPAWRTAAAAVVGDVTGSLWLTPGELIKQKVQAGGAGGAVGVARRMWAAGGAGAFYQGYASQVARDVPFRVIQLVTYEELRRAYVGAKARR--------ARPAGAAVAPXXXX-------XXXXXXAPKVAVSGVEGMLLGAAAGSFTAAVTTPLDVVKTRMMT-AEVGALVGGVPGVVRQVVREEGLRGLARGMGPRVVYIGPSCAIFFAVFEGVKGRL 354
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A7S1TL60_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TL60_9RHOD) HSP 1 Score: 103 bits (258), Expect = 2.570e-21 Identity = 79/241 (32.78%), Postives = 112/241 (46.47%), Query Frame = 1
Query: 223 QEIPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIG-------QGG---LFAGIGTRIFYIGASGATFFVVYEAMKTRLALARKAGP 915
Q +P + +AA D+ G+ WL P EVVK Q+Q G H ++ AT SI G YQG+ GQ+ RDVPFR + L+ YE +R T RE E G +++ D+ LG+AAG+++A +T PLDV++TRLM A S + + +AG + +GG LF G R+ Y+ A FF VYEA +R+ R P
Sbjct: 84 QAVPEQLRIVLAAVAADICGSFWLAPAEVVKQQVQAGLHPSVLTATSSILARGGPLALYQGYLGQISRDVPFRVLLLSVYERIRRRYT----------------------------------REWEPG----RALTPRDSLALGAAAGSVAAAVTTPLDVVKTRLMTDASAS--------LRREFAGPLDCFSQLLRKGGPKELFRGFVPRLLYLTPGLAIFFAVYEATLSRITRPRPQSP 278
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: F0YC20_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC20_AURAN) HSP 1 Score: 99.0 bits (245), Expect = 5.080e-20 Identity = 73/207 (35.27%), Postives = 98/207 (47.34%), Query Frame = 1
Query: 256 AACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEA 876
AA +GD G LWLVP EV+K ++Q G H + A + +R GL GFY G GQ++RD+PFRCIQ+T YE LR RGSA ++G+A G +A+IT P+D+++TR+M G+ VA +A G G + G R Y+G S A FFVVYEA
Sbjct: 80 AAVVGDALGALWLVPHEVLKQRLQTGVHGALGAAVAATWRTGGLLGFYSGLRGQLLRDIPFRCIQMTLYESLR--------------------GRGSA-------------------------------GVVGAAVGTATALITTPMDLVKTRVMVTDGRL-----GSVVADVYA-REGVAGFWRGALHRAAYVGPSTAIFFVVYEA 229
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A7S3A1G4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A1G4_9RHOD) HSP 1 Score: 100 bits (249), Expect = 8.670e-20 Identity = 78/219 (35.62%), Postives = 103/219 (47.03%), Query Frame = 1
Query: 253 VAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRLALARKA 909
+AA GD+TG+LWL P EV+K Q Q G +A+ A A + G+AG Y+G+ G VVRDVPFR +QL YE + R + T N ++ +LG+ AG + T PLDV++TRLM + G V QT A G GLF G+G R+ I S A FFV YEA T AL R++
Sbjct: 124 LAAVFGDITGSLWLCPSEVIKQQQQSGLYASFASAFQGALKQSGVAGLYKGYSGLVVRDVPFRVVQLVMYEECKKFWKERNKRET----------------------------------NDIENL------VLGAVAGMVGGAATTPLDVVKTRLMTQGSTRTYKGALDCVKQTVQ-AEGIPGLFRGVGPRVLLIAPSCAIFFVAYEA--TIRALKRRS 299
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A1X6NJF7_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJF7_PORUM) HSP 1 Score: 99.4 bits (246), Expect = 2.490e-19 Identity = 83/222 (37.39%), Postives = 108/222 (48.65%), Query Frame = 1
Query: 241 MAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREG--EEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLM---AGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRL 891
+A+ +AA GD+ + PFEVVK ++Q G HAT A+A S++R G GFY G+G V+R++PF +Q YE L KTR +A RAR G EG + SA GSAAGA+SA +T PLDV++TR+M AG P GV G GA L AG+ R+ +I GA FF YE K L
Sbjct: 131 VAHMLAAAGGDVASSTVRAPFEVVKQRLQAGLHATSADAVRSVWRTSGARGFYAGYGSLVLRELPFDALQFPLYEAL--------------------KTRWAA----------SRARAGYPNEGRLQTWQTSAC-----GSAAGAVSAAVTTPLDVVKTRMMTQKAGTVPYKGVVDGLSRIAREEGAAA---LAAGMLPRVVWIALGGAIFFGGYEVTKAHL 314 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8760.16293.1 >prot_H-elongata_contig8760.16293.1 ID=prot_H-elongata_contig8760.16293.1|Name=mRNA_H-elongata_contig8760.16293.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp MFSIRCSSLDTSSPVVPRALNLVDLSLPHLTGPMGPSPQEIPRVMAYCVAback to top mRNA from alignment at H-elongata_contig8760:7354..9811+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8760.16293.1 ID=mRNA_H-elongata_contig8760.16293.1|Name=mRNA_H-elongata_contig8760.16293.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2458bp|location=Sequence derived from alignment at H-elongata_contig8760:7354..9811+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8760:7354..9811+ >mRNA_H-elongata_contig8760.16293.1 ID=mRNA_H-elongata_contig8760.16293.1|Name=mRNA_H-elongata_contig8760.16293.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig8760:7354..9811+ (Himanthalia elongata Himel1 dioecious)back to top |