mRNA_H-elongata_contig87598.16292.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87598.16292.1
Unique NamemRNA_H-elongata_contig87598.16292.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: D8LDH9_ECTSI (Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.100e-30
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:   10 ATASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 273
            A  SKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM
Sbjct:    2 AATSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 89
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BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: A0A5D6XLL9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLL9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.770e-26
Identity = 81/90 (90.00%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:   25 RGGAK-------SKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 273
            RGGAK       SKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKM
Sbjct:    8 RGGAKAKSNASKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKM 97
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BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: A0A813A1S0_SYMMI (Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813A1S0_SYMMI)

HSP 1 Score: 103 bits (257), Expect = 4.260e-26
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 1 
Query:   16 ASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 273
            A + GG KSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXX FLEMMT+KM
Sbjct:    3 AKRAGGGKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXXFLEMMTAKM 88
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BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: A0A1V9ZCQ4_9STRA (Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID=A0A1V9ZCQ4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.450e-25
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:   34 AKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 273
            AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKM
Sbjct:   16 AKNKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKM 95
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BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: A0A024GNG8_9STRA (Uncharacterized protein n=21 Tax=Stramenopiles TaxID=33634 RepID=A0A024GNG8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.570e-25
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:   13 TASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 273
            T  K   AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMT+KM
Sbjct:   12 TKGKGNAAKTKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTTKM 98
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BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: A0A024T9W4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T9W4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.800e-25
Identity = 69/88 (78.41%), Postives = 72/88 (81.82%), Query Frame = -2 
Query:    9 ILDVIISRNSWKSMVPEPSLSMSLIIFLISSFLGSNPSARMATFSSFAXXXXXXXXSKRSNASRISCFCSSVSSNFFDLAPPRLDAVA 272
            ILDVIIS+NS KS+VP PSLSMS IIFLISSFLGSNP ARMAT SS  XXXXXXXX KRS ASRISCFCSSVSSNF  LA   + A A
Sbjct:   70 ILDVIISKNSVKSIVPLPSLSMSDIIFLISSFLGSNPRARMATLSSLXXXXXXXXXXKRSKASRISCFCSSVSSNFLFLAAAPVAAPA 157
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BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: A0A7S3D058_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D058_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 1.810e-24
Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:   10 ATASKRGGAKSK---KFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVRAHL 288
            A+ S+R  A+ K   K ELTEEQ+QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMT+KMVR  L
Sbjct:    2 ASLSRRAAARRKAGGKQELTEEQRQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKMVRLSL 97
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BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: A0A3R7A958_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A3R7A958_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.270e-24
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:   34 AKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 273
            AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKM
Sbjct:  164 AKNKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKM 243
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BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: A0A5A8D4X3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D4X3_CAFRO)

HSP 1 Score: 97.1 bits (240), Expect = 1.700e-23
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:   16 ASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 273
            AS RG  K  KFELTEEQ+QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPK   XXXXXXXXXXXXXXXXXXX FL+MMT+KM
Sbjct:    6 ASARGARKGGKFELTEEQRQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKAEXXXXXXXXXXXXXXXXXXXXFLDMMTAKM 91
[Close]
BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Match: A0A3R6VX05_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VX05_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.460e-23
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:   34 AKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM 273
            AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKM
Sbjct:  465 AKNKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKM 544
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87598.16292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDH9_ECTSI5.100e-3097.73Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_... [more]
A0A5D6XLL9_9STRA3.770e-2690.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A813A1S0_SYMMI4.260e-2693.02Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813... [more]
A0A1V9ZCQ4_9STRA1.450e-2596.25Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A024GNG8_9STRA1.570e-2589.66Uncharacterized protein n=21 Tax=Stramenopiles Tax... [more]
A0A024T9W4_9STRA6.800e-2578.41Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S3D058_9EUKA1.810e-2484.38Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A3R7A958_9STRA3.270e-2496.25Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A5A8D4X3_CAFRO1.700e-2386.05Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A3R6VX05_9STRA2.460e-2396.25Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87598contigH-elongata_contig87598:1425..2169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue3.1e-20
Seed eggNOG ortholog112098.XP_008618385.1
Preferred nameCETN1
KEGG koko:K10840,ko:K16465
KEGG Pathwayko03420,map03420
GOsGO:0000003,GO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0000922,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022402,GO:0022406,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031683,GO:0031974,GO:0031981,GO:0032391,GO:0032465,GO:0032501,GO:0032504,GO:0032795,GO:0032991,GO:0033554,GO:0034605,GO:0034622,GO:0034641,GO:0035869,GO:0036064,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0046483,GO:0046872,GO:0048232,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097458,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0098534,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncentrin
Ec32 orthologEc-15_000530.1
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931276.9191134-CDS-H-elongata_contig87598:1424..15421622931276.9191134-CDS-H-elongata_contig87598:1424..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87598 1425..1542 +
1691679770.0450773-CDS-H-elongata_contig87598:1424..15421691679770.0450773-CDS-H-elongata_contig87598:1424..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87598 1425..1542 +
1622931276.9393437-CDS-H-elongata_contig87598:1999..21691622931276.9393437-CDS-H-elongata_contig87598:1999..2169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87598 2000..2169 +
1691679770.0616267-CDS-H-elongata_contig87598:1999..21691691679770.0616267-CDS-H-elongata_contig87598:1999..2169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87598 2000..2169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87598.16292.1prot_H-elongata_contig87598.16292.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87598 1425..2169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87598.16292.1

>prot_H-elongata_contig87598.16292.1 ID=prot_H-elongata_contig87598.16292.1|Name=mRNA_H-elongata_contig87598.16292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
KKQATASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVA
MRALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMVRAHL
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mRNA from alignment at H-elongata_contig87598:1425..2169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87598.16292.1 ID=mRNA_H-elongata_contig87598.16292.1|Name=mRNA_H-elongata_contig87598.16292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=745bp|location=Sequence derived from alignment at H-elongata_contig87598:1425..2169+ (Himanthalia elongata Himel1 dioecious)
AAAAAACAGGCGACAGCATCCAAGCGCGGGGGCGCCAAATCGAAAAAGTT
CGAGCTGACGGAGGAGCAGAAGCAGGAGATCCGAGAAGCGTTCGATCTCT
TCGACACGGATGGCTCGGGTAAGTCTAGTGGGGTGGAGTGGAATCGGGCG
GAGCGCTGGTGGGCAAAAAACGTTCGATGTGTATTATTTCTCGCCGCAAA
AGATGTCTTGGGTCGCGGTAGAAAGAGTAGTGGCAGCGGCAGCGGTGGAG
TAGCGCAAACACCGCTGATGCTTTAATGGCGTGCCTTGAGGTGGGGCAAA
GGGAGCGCGCCCAGGCAACGGAAGCTTTCGCCCCGGAGTGGGCGCAAACG
AGGAGAAATTCGCCGCCGTCCCTAGTCGTGTGCCGCATGCCCTGGTTCGG
TTTGGGGAAGGTGGGGGGGAGGGTGGGGACAGAGATGTTCTCTGGCTTCC
AAATGGCGGGATGCGGTCGATTGCCCTCGGGTTTGGAAGATGTGACACGG
TCCGCAGTACCCGTAAACAGTTAGCTTTCCCTTTCCCTTTGTTTTTATTC
GCGTTGCCTGCTTTTGAATCCGCAGGCACGATCGACGCGAAGGAGCTGAA
GGTGGCCATGCGAGCGCTCGGGTTCGAGCCCAAGAAGGAGGAGATCAAGA
AGATGATCAGTGACATCGACAAGGACGGCTCCGGTACCATCGACTTCCAG
GAGTTTCTAGAGATGATGACGTCCAAGATGGTGAGAGCCCATCTC
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Coding sequence (CDS) from alignment at H-elongata_contig87598:1425..2169+

>mRNA_H-elongata_contig87598.16292.1 ID=mRNA_H-elongata_contig87598.16292.1|Name=mRNA_H-elongata_contig87598.16292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig87598:1425..2169+ (Himanthalia elongata Himel1 dioecious)
AAAAAACAGGCGACAGCATCCAAGCGCGGGGGCGCCAAATCGAAAAAGTT
CGAGCTGACGGAGGAGCAGAAGCAGGAGATCCGAGAAGCGTTCGATCTCT
TCGACACGGATGGCTCGGAAAAAACAGGCGACAGCATCCAAGCGCGGGGG
CGCCAAATCGAAAAAGTTCGAGCTGACGGAGGAGCAGAAGCAGGAGATCC
GAGAAGCGTTCGATCTCTTCGACACGGATGGCTCGGGCACGATCGACGCG
AAGGAGCTGAAGGTGGCCATGCGAGCGCTCGGGTTCGAGCCCAAGAAGGA
GGAGATCAAGAAGATGATCAGTGACATCGACAAGGACGGCTCCGGTACCA
TCGACTTCCAGGAGTTTCTAGAGATGATGACGTCCAAGATGGTGAGAGCC
CATCTCGCACGATCGACGCGAAGGAGCTGAAGGTGGCCATGCGAGCGCTC
GGGTTCGAGCCCAAGAAGGAGGAGATCAAGAAGATGATCAGTGACATCGA
CAAGGACGGCTCCGGTACCATCGACTTCCAGGAGTTTCTAGAGATGATGA
CGTCCAAGATGGTGAGAGCCCATCTC
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