mRNA_H-elongata_contig87015.16252.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: D7FK70_ECTSI (tRNA-splicing endonuclease positive effector n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK70_ECTSI) HSP 1 Score: 332 bits (852), Expect = 8.340e-105 Identity = 180/262 (68.70%), Postives = 209/262 (79.77%), Query Frame = 1
Query: 91 SPAAARQAFAILEGAQEQAAKEILEEVDVVVCSCIGAGNDAFIRAIGGGQDSGFSSVRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQLPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPVAFVRVNDHGNGHESGQKDGKGGGEVAKRRGQLESRGGIETGQGENMGGVWSSQSPISSSALGTSYCNNREARAVAIALELFVGGGDVE 876
S +A+R+A+A+LE AQ +AA++I++ DVVVCSCIGAGNDAF+RAIGG Q+ GFSS+RFSTV+IDEATQATEAAALVPII GCQQLVLVGDQNQLPPTVI PEA+DGGLGTSLFSRLMHAGIKPILL+RQYRMHPAIS+FPS HFY+GQV++GIR +DRPTP GFPWP + PVAFVRV++ G +G RRGQLESRGG E GG ++S +ALGTSYCN REA AVA ALEL + GDVE
Sbjct: 403 SQSASRRAYAVLEAAQLEAARQIIKGADVVVCSCIGAGNDAFVRAIGGDQEGGFSSIRFSTVVIDEATQATEAAALVPIIRGCQQLVLVGDQNQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRQYRMHPAISDFPSLHFYDGQVTTGIRASDRPTPAGFPWPAASGPVAFVRVSESGGESHAGVG--------GARRGQLESRGGTEAAV---QGGSFAS------AALGTSYCNVREAEAVAFALELLLREGDVE 647
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: A0A6H5L473_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L473_9PHAE) HSP 1 Score: 252 bits (643), Expect = 1.050e-75 Identity = 159/294 (54.08%), Postives = 188/294 (63.95%), Query Frame = 1
Query: 64 SSPSSSKGSSPA--AARQAFAILEGAQEQAAKEILEEVDVVVCSCIGAGNDAFIRAIGGGQDSGFSSVRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQ---------------------LPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPVAFVRVNDHGNGHESGQKDGKGGGEVAKRRGQLESRGGIETGQGENMGGVWSSQSPISSSALGTSYCNNREARAVAIALELFVGGGDVE 876
S P +S ++P+ A+R+A+A+LE AQ +AA++I++ DVVVCSCIGAGNDAF+RAIGG Q+ GFSS+RFSTV+IDEATQATEAAALVPII GCQQLVLVGDQNQ LPPTVI PEA+DGGLGTSLFSRLMHAGIKPILL+R P GFPWP + PVAFVRV++ G E + + GG +RGQLESRGG E GG ++S +ALGTSYCN REA AVA ALEL + GDVE
Sbjct: 376 SKPRNSSATTPSQSASRRAYAVLEAAQLEAARQIIKGADVVVCSCIGAGNDAFVRAIGGDQEGGFSSIRFSTVVIDEATQATEAAALVPIIRGCQQLVLVGDQNQNSTRPPLFPPLRPRFIGDGPQLPPTVICPEAEDGGLGTSLFSRLMHAGIKPILLNRLI------------------------------PAGFPWPAASGPVAFVRVSESGGEREKRESNAGVGG---AKRGQLESRGGTEAAV---QGGSFAS------AALGTSYCNLREAEAVAFALELLLREGDVE 627
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: A0A835Z7U9_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U9_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.510e-56 Identity = 99/170 (58.24%), Postives = 122/170 (71.76%), Query Frame = 1
Query: 172 DVVVCSCIGAGNDAFIRAIGGGQDSGFSS-VRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQLPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPVAFVRVNDHGNGHESGQKDGKGG 678
DVVVCSCIGAG + A +++G ++ + FSTVLIDEATQATE A+LVP+ GC+QL+LVGDQNQLPPT++S A GGL TSLF+RLM AG+ P++L RQYRMHP I+ FP FY G+++S R DRPTPRGFPWP PVAFV V D +G + G GG
Sbjct: 2 DVVVCSCIGAGGEQLAAASEQCEETGAAAGLTFSTVLIDEATQATEPASLVPLTRGCEQLILVGDQNQLPPTILSRGAAAGGLATSLFARLMLAGVAPVVLARQYRMHPRIAAFPGARFYGGRLASAPRAVDRPTPRGFPWPNAAVPVAFVAVRDDSDGARGLEARGSGG 171
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: A0A0G4HN17_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HN17_9ALVE) HSP 1 Score: 168 bits (426), Expect = 2.210e-43 Identity = 93/194 (47.94%), Postives = 121/194 (62.37%), Query Frame = 1
Query: 133 AQEQAAKEILEEVDVVVCSCIGAGNDAFIRAIG-GGQDSGFSSVRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQLPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPVAFVRVNDHGNGHESGQKDGKGGGEVAKRRGQLE 711
A+++A I+ DVVV SC+GAG F+ A+ G D S + FSTVL+DEA+Q TE AALVP++ G +Q++LVGDQNQLPPTV + + L SLF RL+ AG+KP +L RQYRMHP I+ FPS FY G++ S + DRP PRG WP APV V D H + D KGGG+ + + E
Sbjct: 1695 AEKRALWRIMASADVVVSSCMGAGKVDFVNALECPGWDPERSPISFSTVLLDEASQVTEPAALVPLVTGAEQVILVGDQNQLPPTVTTESVKEKCLDVSLFVRLVLAGVKPFMLGRQYRMHPVIAAFPSAQFYGGKLESVPKAEDRPAPRGVLWPDRNAPVMMAAVTDE-TLHLESRADWKGGGDTTSYQNKRE 1887
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: A0A2V3I143_9EURY (Helicase ATP-binding domain-containing protein n=8 Tax=root TaxID=1 RepID=A0A2V3I143_9EURY) HSP 1 Score: 166 bits (419), Expect = 3.290e-43 Identity = 84/164 (51.22%), Postives = 107/164 (65.24%), Query Frame = 1
Query: 136 QEQAAKEILEEVDVVVCSCIGAGNDAFIRAIGGGQDSGFSSVRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQLPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPVAFVRV 627
+ Q +IL V+ C+CIG+G++ RFS VLIDEATQATE AALVP++ G +Q+VL+GD QLPPTVIS A++GGL SLF RL+ GI+P+LL QYRMHPAIS FP+GHFY+ + G+ DRPTP G WP P+AF+ V
Sbjct: 341 ESQMRDDILNRSQVLCCTCIGSGHELL------------DGRRFSRVLIDEATQATEPAALVPLVRGARQIVLIGDHRQLPPTVISQRAENGGLNRSLFERLVEMGIEPLLLRTQYRMHPAISAFPNGHFYDDLLEDGVTSEDRPTPAGLLWPDWDMPIAFLPV 492
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: A0A7R9VZS5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZS5_9STRA) HSP 1 Score: 162 bits (410), Expect = 4.830e-43 Identity = 83/160 (51.88%), Postives = 106/160 (66.25%), Query Frame = 1
Query: 160 LEEVDVVVCSCIGAGNDAFIRAIGGGQDSGFSSVRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQLPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPVAFVRVNDHG 639
L+ V+ C+CIG+G+D ++ F VL+DEATQATE A LVP+ GC+QLVLVGD QLPPTV+S A++ GLG LFSRL+ G+ P +LD QYRMHPAI+ FPS FY G++ +G+ P +R GFPWP + PVAFV VN HG
Sbjct: 14 LKAAQVICCTCIGSGSDML------------DNMTFDRVLVDEATQATEPAVLVPLTRGCRQLVLVGDHCQLPPTVLSTIAEEEGLGVPLFSRLVACGVPPFMLDTQYRMHPAIAMFPSDLFYGGKLCNGVSPPERRPLAGFPWPREEFPVAFVPVN-HG 160
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: A0A0G4FCG3_VITBC (SAP domain-containing protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FCG3_VITBC) HSP 1 Score: 167 bits (422), Expect = 7.250e-43 Identity = 91/175 (52.00%), Postives = 118/175 (67.43%), Query Frame = 1
Query: 133 AQEQAAKEILEEVDVVVCSCIGAGNDAFIRAIGGGQ-DSGFSSVRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQLPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPVAFVRVNDHGNGHES 654
A+++A +I+ + DVVV S I AG + D+ V+FSTVLIDEA+Q TE AA VP++ GC+QL+LVGDQNQLP TV+S +A GL SLFSRL+ AG+ P++L QYRMHPAI+ FPS FY+ ++ S +P +RPTP GFPWP D PVAFV V + ES
Sbjct: 827 AEQRAIYDIVTKADVVVTSAISAGQPGLTSTTQVPEWDTQRVPVKFSTVLIDEASQVTEPAASVPMVKGCEQLILVGDQNQLPATVVSDKAKAEGLNLSLFSRLVLAGVVPVMLAAQYRMHPAIAMFPSFEFYDDRLISIPKPEERPTPGGFPWPDDVKPVAFVSVMEPAGYSES 1001
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: A0A2E0PQ68_9EURY (AAA domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E0PQ68_9EURY) HSP 1 Score: 164 bits (416), Expect = 8.790e-43 Identity = 81/164 (49.39%), Postives = 107/164 (65.24%), Query Frame = 1
Query: 136 QEQAAKEILEEVDVVVCSCIGAGNDAFIRAIGGGQDSGFSSVRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQLPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPVAFVRV 627
+ Q EIL+ V+ C+CIG+G++ RFS VLIDEATQATE A LVP++ G +Q+V+VGD QLPPTV+S A++GGL SLF RL+ G+ ILLD QYRMHP+IS FP+ HFY+G++ GI ++RPTP G WP PV F+ +
Sbjct: 342 ERQIRDEILDRAQVLCCTCIGSGHELL------------DGRRFSRVLIDEATQATEPATLVPLVRGARQVVMVGDHKQLPPTVVSRRAENGGLTRSLFERLVDMGVSTILLDTQYRMHPSISEFPNSHFYDGELMDGIEASERPTPSGLLWPDWDIPVCFIPI 493
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: A0A7S0MPY6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MPY6_9CRYP) HSP 1 Score: 152 bits (384), Expect = 1.510e-42 Identity = 79/151 (52.32%), Postives = 104/151 (68.87%), Query Frame = 1
Query: 160 LEEVDVVVCSCIGAGNDAFIRAIGGGQDSGFSSVRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQLPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPV 612
+ E DVVV S +GAG++ A+ D+ +R+ TV++DEA+QATE A LVP+ GC++LVLVGD QLPPTV SP A GLG SL +RL+ AG++P +L+ QYRMHPA+++FPS FY G++ S PADRP P GF WP PV
Sbjct: 3 VREADVVVASLVGAGHEGLDDALALLPDAP-GGLRYGTVVVDEASQATEPATLVPLTRGCRRLVLVGDHCQLPPTVASPHALRAGLGVSLLARLVAAGVRPQVLEDQYRMHPALADFPSAAFYAGRLRSVPAPADRPLPPGFDWPRPDTPV 152
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Match: A0A1Z9IVA1_9EURY (AAA domain-containing protein n=5 Tax=unclassified Euryarchaeota TaxID=115531 RepID=A0A1Z9IVA1_9EURY) HSP 1 Score: 163 bits (413), Expect = 2.320e-42 Identity = 83/159 (52.20%), Postives = 105/159 (66.04%), Query Frame = 1
Query: 154 EILEEVDVVVCSCIGAGNDAFIRAIGGGQDSGFSSVRFSTVLIDEATQATEAAALVPIICGCQQLVLVGDQNQLPPTVISPEADDGGLGTSLFSRLMHAGIKPILLDRQYRMHPAISNFPSGHFYNGQVSSGIRPADRPTPRGFPWPTDTAPVAFVRVN 630
+IL+ V+ C+CIG+G+D RFS VLIDEATQATE A+LVP++ G +Q+VL+GD QLPPTVIS A+DGGL SLF RL+ GI+P LL QYRMHP+IS FP+ HFY G + G+ P +R P G WP AP+AFV V+
Sbjct: 348 DILDRCQVLCCTCIGSGHDLL------------DGRRFSRVLIDEATQATEPASLVPLVRGSRQIVLIGDHKQLPPTVISRRAEDGGLSRSLFERLIDMGIEPKLLTTQYRMHPSISEFPNVHFYEGMLEDGVSPEERTAPVGMLWPDWDAPMAFVPVD 494 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87015.16252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87015.16252.1 >prot_H-elongata_contig87015.16252.1 ID=prot_H-elongata_contig87015.16252.1|Name=mRNA_H-elongata_contig87015.16252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp GLIKRGTAEDAEPEGAEAGVPSSPSSSKGSSPAAARQAFAILEGAQEQAAback to top mRNA from alignment at H-elongata_contig87015:149..2461- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87015.16252.1 ID=mRNA_H-elongata_contig87015.16252.1|Name=mRNA_H-elongata_contig87015.16252.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2313bp|location=Sequence derived from alignment at H-elongata_contig87015:149..2461- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87015:149..2461- >mRNA_H-elongata_contig87015.16252.1 ID=mRNA_H-elongata_contig87015.16252.1|Name=mRNA_H-elongata_contig87015.16252.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig87015:149..2461- (Himanthalia elongata Himel1 dioecious)back to top |