mRNA_H-elongata_contig8701.16249.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8701.16249.1
Unique NamemRNA_H-elongata_contig8701.16249.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8701.16249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8701contigH-elongata_contig8701:886..1680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931270.633673-CDS-H-elongata_contig8701:887..12861622931270.633673-CDS-H-elongata_contig8701:887..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8701 888..1286 -
1691679767.6728635-CDS-H-elongata_contig8701:887..12861691679767.6728635-CDS-H-elongata_contig8701:887..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8701 888..1286 -
1622931270.6469772-CDS-H-elongata_contig8701:1578..16801622931270.6469772-CDS-H-elongata_contig8701:1578..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8701 1579..1680 -
1691679767.6828175-CDS-H-elongata_contig8701:1578..16801691679767.6828175-CDS-H-elongata_contig8701:1578..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8701 1579..1680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8701.16249.1prot_H-elongata_contig8701.16249.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8701 888..1680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8701.16249.1

>prot_H-elongata_contig8701.16249.1 ID=prot_H-elongata_contig8701.16249.1|Name=mRNA_H-elongata_contig8701.16249.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
ATREQTVSALSVPAVGFTAGNWEAVEWAESCLLKILRLFCVGEEVRATEE
EKAAVNAAAQAVAEAKAAAAASSVSRLRGNAGRSSRADGVSNSTEAKAGR
ETPTISSDERSPLNDGFIVGVEEAWGDGQPLLQREGASTMSADPNDKESV
RREDEEVEDLGVWRATE
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mRNA from alignment at H-elongata_contig8701:886..1680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8701.16249.1 ID=mRNA_H-elongata_contig8701.16249.1|Name=mRNA_H-elongata_contig8701.16249.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at H-elongata_contig8701:886..1680- (Himanthalia elongata Himel1 dioecious)
GCGACGCGTGAGCAGACGGTCTCGGCGTTATCAGTGCCGGCGGTGGGGTT
TACTGCAGGAAACTGGGAGGCGGTGGAGTGGGCGGAGTCGTGCCTCCTCA
AGGTGAGAGTCCCACGCAAACCGAGCGCGCGAACAATGCGATACACGCTG
GGTTGCGCTACCATTTTGTCGCACCTTGTTTTTAATCATTGTTTGGTGCA
CTCTTCCAATCGATCTCTATTCTTCGGCCTAGGGAGAGGCTTTGGCGTGA
CTTTCTTGTGTTGCGCGGTCGACGCTGCTCCACCTACCAACCCTCTCTCT
CCCTTCGCCCTCCTGTTCTCTTTTCTCTTTTTTTCTTCGCCGTTGACTTT
GACCATGGCTTTCTTTCTCCCGTTCACCGTGCACGCGCGCGAAGATCCTG
AGGCTATTTTGCGTTGGAGAGGAGGTACGGGCTACGGAGGAAGAGAAGGC
GGCGGTGAATGCGGCAGCGCAAGCGGTGGCCGAAGCGAAAGCGGCGGCGG
CGGCGTCCTCTGTCAGCCGGCTCAGAGGCAACGCCGGAAGAAGTAGTCGG
GCGGACGGAGTTTCCAATTCGACGGAGGCGAAGGCGGGACGAGAAACACC
AACTATTTCTTCCGACGAGCGTTCTCCGTTAAACGATGGCTTTATTGTTG
GTGTAGAAGAGGCTTGGGGAGACGGACAGCCGCTGCTGCAAAGGGAGGGT
GCGTCGACGATGTCCGCTGACCCCAACGATAAGGAGAGTGTTCGTAGAGA
GGATGAAGAGGTGGAGGATCTCGGAGTGTGGAGAGCGACCGAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig8701:886..1680-

>mRNA_H-elongata_contig8701.16249.1 ID=mRNA_H-elongata_contig8701.16249.1|Name=mRNA_H-elongata_contig8701.16249.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig8701:886..1680- (Himanthalia elongata Himel1 dioecious)
GCGACGCGTGAGCAGACGGTCTCGGCGTTATCAGTGCCGGCGGTGGGGTT
TACTGCAGGAAACTGGGAGGCGGTGGAGTGGGCGGAGTCGTGCCTCCTCA
AGGCGACGCGTGAGCAGACGGTCTCGGCGTTATCAGTGCCGGCGGTGGGG
TTTACTGCAGGAAACTGGGAGGCGGTGGAGTGGGCGGAGTCGTGCCTCCT
CAAGATCCTGAGGCTATTTTGCGTTGGAGAGGAGGTACGGGCTACGGAGG
AAGAGAAGGCGGCGGTGAATGCGGCAGCGCAAGCGGTGGCCGAAGCGAAA
GCGGCGGCGGCGGCGTCCTCTGTCAGCCGGCTCAGAGGCAACGCCGGAAG
AAGTAGTCGGGCGGACGGAGTTTCCAATTCGACGGAGGCGAAGGCGGGAC
GAGAAACACCAACTATTTCTTCCGACGAGCGTTCTCCGTTAAACGATGGC
TTTATTGTTGGTGTAGAAGAGGCTTGGGGAGACGGACAGCCGCTGCTGCA
AAGGGAGGGTGCGTCGACGATGTCCGCTGACCCCAACGATAAGGAGAGTG
TTCGTAGAGAGGATGAAGAGGTGGAGGATCTCGGAGTGTGGAGAGCGACC
GAGATCCTGAGGCTATTTTGCGTTGGAGAGGAGGTACGGGCTACGGAGGA
AGAGAAGGCGGCGGTGAATGCGGCAGCGCAAGCGGTGGCCGAAGCGAAAG
CGGCGGCGGCGGCGTCCTCTGTCAGCCGGCTCAGAGGCAACGCCGGAAGA
AGTAGTCGGGCGGACGGAGTTTCCAATTCGACGGAGGCGAAGGCGGGACG
AGAAACACCAACTATTTCTTCCGACGAGCGTTCTCCGTTAAACGATGGCT
TTATTGTTGGTGTAGAAGAGGCTTGGGGAGACGGACAGCCGCTGCTGCAA
AGGGAGGGTGCGTCGACGATGTCCGCTGACCCCAACGATAAGGAGAGTGT
TCGTAGAGAGGATGAAGAGGTGGAGGATCTCGGAGTGTGGAGAGCGACCG
AG
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