mRNA_H-elongata_contig86980.16245.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86980.16245.1
Unique NamemRNA_H-elongata_contig86980.16245.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.500e-30
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:   15 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 79
[Close]
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.420e-30
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:   13 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 77
[Close]
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.420e-29
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:   13 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 77
[Close]
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.460e-29
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:   79 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 143
[Close]
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.850e-29
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:   10 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNL 74
[Close]
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.780e-28
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:  186 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 250
[Close]
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.160e-28
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:   13 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 77
[Close]
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.980e-27
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:  360 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 424
[Close]
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.290e-27
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:   77 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 141
[Close]
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.810e-27
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    7 RTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKKLTDLLVEPMLFDRLSRL 201
            RTQLPL+L WAITMHKSQGQTL+KAVIDLG KEACTGLTFVCLSRAK+L DL+VEPM FDR+  L
Sbjct:  356 RTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNL 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86980.16245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSF1_9PHAE2.500e-3083.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE6.420e-3083.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.420e-2983.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE1.460e-2983.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE2.850e-2983.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS2_9PHAE1.780e-2883.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE2.160e-2883.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFG8_9PHAE1.980e-2783.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE2.290e-2783.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Y8_9PHAE3.810e-2783.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86980contigH-elongata_contig86980:660..860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score77.4
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog588596.U9U7T2
EggNOG OGs2D017@1,2SCDQ@2759,3AE97@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.995115-CDS-H-elongata_contig86980:659..8601622931269.995115-CDS-H-elongata_contig86980:659..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86980 660..860 -
1691679767.4582844-CDS-H-elongata_contig86980:659..8601691679767.4582844-CDS-H-elongata_contig86980:659..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86980 660..860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86980.16245.1prot_H-elongata_contig86980.16245.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86980 660..860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86980.16245.1

>prot_H-elongata_contig86980.16245.1 ID=prot_H-elongata_contig86980.16245.1|Name=mRNA_H-elongata_contig86980.16245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MTRTQLPLKLYWAITMHKSQGQTLSKAVIDLGEKEACTGLTFVCLSRAKK
LTDLLVEPMLFDRLSRL
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mRNA from alignment at H-elongata_contig86980:660..860-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86980.16245.1 ID=mRNA_H-elongata_contig86980.16245.1|Name=mRNA_H-elongata_contig86980.16245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig86980:660..860- (Himanthalia elongata Himel1 dioecious)
ATGACCAGAACGCAGCTCCCACTCAAGTTATACTGGGCTATCACCATGCA
CAAGAGTCAAGGCCAGACGTTGTCAAAGGCCGTTATCGATTTGGGGGAAA
AGGAAGCGTGCACTGGATTGACTTTTGTCTGTTTGAGTCGTGCTAAGAAG
TTGACCGATTTGCTGGTAGAACCAATGCTGTTCGATCGTCTTTCAAGGTT
A
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Coding sequence (CDS) from alignment at H-elongata_contig86980:660..860-

>mRNA_H-elongata_contig86980.16245.1 ID=mRNA_H-elongata_contig86980.16245.1|Name=mRNA_H-elongata_contig86980.16245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig86980:660..860- (Himanthalia elongata Himel1 dioecious)
ATGACCAGAACGCAGCTCCCACTCAAGTTATACTGGGCTATCACCATGCA
CAAGAGTCAAGGCCAGACGTTGTCAAAGGCCGTTATCGATTTGGGGGAAA
AGGAAGCGTGCACTGGATTGACTTTTGTCTGTTTGAGTCGTGCTAAGAAG
TTGACCGATTTGCTGGTAGAACCAATGCTGTTCGATCGTCTTTCAAGGTT
AATGACCAGAACGCAGCTCCCACTCAAGTTATACTGGGCTATCACCATGC
ACAAGAGTCAAGGCCAGACGTTGTCAAAGGCCGTTATCGATTTGGGGGAA
AAGGAAGCGTGCACTGGATTGACTTTTGTCTGTTTGAGTCGTGCTAAGAA
GTTGACCGATTTGCTGGTAGAACCAATGCTGTTCGATCGTCTTTCAAGGT
TA
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