mRNA_H-elongata_contig86621.16221.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: D7FMN3_ECTSI (Ribosome biogenesis regulatory protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN3_ECTSI) HSP 1 Score: 210 bits (534), Expect = 1.460e-64 Identity = 120/165 (72.73%), Postives = 129/165 (78.18%), Query Frame = 1
Query: 1 RAKNEERAGGTPKPGIPVDLAPGRKDRSDGAAPRGGAKGGVASVKRGKDGTRGALEMVQHSTASMGKFDERRPSEPERRKPKGVRRTFKPVTVASGRETQSQIKILNAVMIGKSKSADKEGAARSTKASLAAYDAVEGPHDPGAKRKKGKGAVGKAKKITKRRVK 495
RAKN ERAGG KPGIPVDL P KD G+ GG A KRGK T+GALE+VQHSTASMGKFDERR +EPERRK KGVRR FKPVTV SG ETQ +KILN+VMIGKSKSADK+G ARS K SLAAYDA+EGP D GAKRKKGKGA GKAKK+TK R K
Sbjct: 188 RAKNVERAGGGAKPGIPVDLLPSAKD---------GSGGGGAPAKRGKANTKGALELVQHSTASMGKFDERRHAEPERRKGKGVRRAFKPVTVGSGEETQGHLKILNSVMIGKSKSADKDGTARSAKESLAAYDAIEGPRDAGAKRKKGKGASGKAKKVTKGRAK 343
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: A0A7S2UUR0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR0_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 9.500e-20 Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = 1
Query: 7 KNEERAGGT--PKPGIPVDLAPGRKDRSDGAAPRGGAKGGVASVKRGKDGTRGALEMVQHSTASMGKFDERRPSEPERRKPKGVRRTFKPVTVASGR-ETQSQIKILNAVMIGKSKSADKEGAARSTKASLAAYDAVEGP-HDPGAKRKKGKGAVGKAKKITKRRVK 495
KN+ AG T GIPVDL RS +A G V +KRG+D T L +VQ+STASMGKFDE R EPE++ +G RR F+P+ A + E+Q+Q+K + A+++ K KS K + +K+ LA YDA+EG HD +++KG+ GK KK+TK+R K
Sbjct: 345 KNQLHAGNTRAAPAGIPVDLVSATA-RSVASARAAGTMKPV--LKRGRDKTEKTLRLVQNSTASMGKFDEVRQGEPEKKARQGKRRKFQPLLSAQPKAESQAQLKTVQAILVNKGKS--KSQVSHQSKSDLAVYDAIEGEKHD--FRKRKGRAGAGKMKKVTKKRGK 504
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: A0A7S0CHW9_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHW9_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 5.440e-11 Identity = 61/138 (44.20%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 109 AKGGVASVKRGKDGTRGALEMVQHSTASMGKFDERRPSEPERRKPKGVRRT-FKPVT--VASGRETQSQIKILNAVMIGKSKSADKEGAARSTKASLAA------YDAVEGPHDPGAKRKKGKGAVGKAKKITKRRVK 495
A G +KRGK+ T AL Q STASMGKFD+ EPER++ VR+ F +T S E++ +K+LNAVM G A KE A R+ SLA YD +G +D K+KKG+ A GK KK+TK+R+K
Sbjct: 356 ANAGANPLKRGKELTSRALAATQRSTASMGKFDKMIEGEPERKQ--SVRKQKFDSLTDKTRSRMESEKSMKLLNAVMSGGGAKA-KERARRN--GSLAKGETAYDYDFDDGGYDGSFKKKKGRAAAGKNKKLTKKRIK 488
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: A0A7S4AIZ9_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AIZ9_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 5.460e-9 Identity = 75/193 (38.86%), Postives = 92/193 (47.67%), Query Frame = 1
Query: 1 RAKNEERAGGTPK-----------PGIPVDLAPGRKDRSDGAAPRG---GAKGGVASVK------RGKDGTRGALEMVQHSTASMGKFDERRPSEPERRK--PKGVRRTFKPVTVAS--GRETQSQIKILNAVMIG----KSKSADKEGAARSTKASLAAYDAVEGPHDPGAKRKKGKGAVGKAKKITKRRVK 495
R KNEERAG K L GRKD + P G K V K RGK T AL VQ STAS+GKFD+ R EPER+K K +R F+ T E S +KILNAVM G K+K+ K A+ A Y+ +G ++KKG+G VGK KK+TK+R K
Sbjct: 292 RMKNEERAGNLAKGATNRTMKARDQAYNAGLVAGRKDNK--SLPAGLPVDLKNSVDPNKSADNKLRGKSSTLAALSAVQKSTASLGKFDKMREGEPERKKGLSKTKKRKFENPTDKKVLRSEGDSSMKILNAVMNGGGVAKAKAIRKGQLAKGETAYD--YEFNDGLGASTFRKKKGRGGVGKMKKMTKKRAK 480
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: A0A7S3H4J0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4J0_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.330e-8 Identity = 58/158 (36.71%), Postives = 79/158 (50.00%), Query Frame = 1
Query: 40 PGIPVDLAPGRKDRSDGAAPRGGAKGGVASVKRGKDGTRGALEMVQHSTASMGKFDERRPSEPERRKPKGVRRTFKPVTVASGRETQSQIKILNAVMIGKSKSADKEGAARSTKASLAAYDAV--EGPHD-----------PGAKRKKGKGAVGKAKK 474
PGIP+D+ DG A KRG+ G + AL++VQHSTASMG+FDE RP EP R K G +R+F+ + ++ + +K + K ADK+ AR SLAAY+ + + P D P KKGKG GK +K
Sbjct: 27 PGIPLDIG------KDGKA------------KRGRGGLKTALQLVQHSTASMGRFDEMRPGEPMR-KLSGKKRSFRD-NIGGAQQDKDSMKAQLRFVADK---ADKK--ARGVTNSLAAYEGIVPDAPSDSFKQRKGRGKAPKTDGKKGKGPNGKGRK 159
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: A0A7R9YG55_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG55_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 7.850e-8 Identity = 60/161 (37.27%), Postives = 84/161 (52.17%), Query Frame = 1
Query: 43 GIPVDLAPGRKDRSDGAAPRGGAKGGVASVKRGKDGTRGALEMVQHSTASMGKFDE---RRPSEPERRKPKGVRRTFKPVTVASG-------RETQSQIKILNAVMIGKSKSADKEGAARSTKAS-LAAYDAVEGPHDPGAKRKKGKGAVGKAKKITKRRV 492
GIPVDL+ + GA G A++KRGK T+ AL+ STASMG FDE R+ + ++ K V + SG RE + ++IL +V + K K + R+ A +A YDAVEG D KRKKG+GA GK KK+T+++
Sbjct: 222 GIPVDLSKTKV----------GAGAGDAALKRGKLNTKLALKSAAVSTASMGVFDEGVTRKDLKAGKKGLKAVAERRRNKIKGSGVEKNAVERERSTALEILRSVKVRKEKKDLGQAGMRAKNAQDIAIYDAVEGGPDA-QKRKKGRGAQGKIKKLTRKQT 371
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: A0A484DXV0_BRELC (Ribosome biogenesis regulatory protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXV0_BRELC) HSP 1 Score: 59.3 bits (142), Expect = 2.410e-7 Identity = 47/123 (38.21%), Postives = 61/123 (49.59%), Query Frame = 1
Query: 121 VASVKRGKDGTRGALEMVQHSTASMGKFDERRPSEPERRKPKGVRRTFKPVTVASGRETQSQIKILNAVMIGKSKSADKEGAARSTKASLAAYDAVEGPHDPGAKRKKGKGAVGKAKKITKRR 489
+ + +RGK+GT ALE VQ STASMGKFD R E ER K KG R F P T A E + + L V+ + + K+G + E D G ++KKGK K TK+R
Sbjct: 210 IKAKQRGKEGTSQALEKVQFSTASMGKFDAMRQGETER-KVKGKRNHFLPTTGAEATERERSLNALKRVLGREENAGKKKGG----------MEXXEDAKDSGKRKKKGKQLKNFTKGATKKR 321
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: A0A7S4ECG7_9STRA (Ribosome biogenesis regulatory protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECG7_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 3.130e-7 Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 1
Query: 133 KRGKDGTRGALEMVQHSTASMGKFDE------RRPSEPERRKPKGVRRTFKPVTVASGRETQSQIKILNAVMIGKSKSADKEGAARSTKASLAAYDAVEG--PHDPGAKRKKGKGAVGKAKKITKRR 489
K+GK G +GALE Q +TAS+G+FD +RPS P R G +R F V A G + IL + ++ A R K D +G P++ G KRKKGK A GK+KKITK+R
Sbjct: 193 KKGKAGVKGALERAQVATASLGQFDAVVAGEGKRPSGPAR----GRKRQFLSVASARGSDAARASAILQDL--------ERPRAKRPGKGEAERMDTHDGELPNESGFKRKKGKAAAGKSKKITKKR 307
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: A0A3F2RMI9_9STRA (Ribosome biogenesis regulatory protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMI9_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 4.510e-7 Identity = 51/114 (44.74%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 22 AGGTPKPGIPVDLAPGRKDRSDGAAPRGGAKGGVASVKRGKDGTRGALEMVQHSTASMGKFDERRPSEPERRKPKGVRRTFKPVTVASGRETQSQIKILNAV--MIGKSKSADK 357
AG TP GIPV+L + D V + +RGKDGT ALE VQ STASMGKFD+ R E ER K KG R F P T G ET + + LNA+ ++G+ ++A K
Sbjct: 193 AGRTPT-GIPVELM----NTDD-----------VKAKQRGKDGTTKALEKVQFSTASMGKFDKMREGESER-KQKGKRNHFLPTT---GAETTEKERSLNALKHVLGREENAGK 286
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Match: A0A812RX42_SYMMI (Ribosome biogenesis regulatory protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RX42_SYMMI) HSP 1 Score: 57.0 bits (136), Expect = 1.300e-6 Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 40 PGIPVDLAPGRKDRSDGAAPRGGAKGGVASVKRGKDGTRGALEMVQHSTASMGKFDERRPSEPERRKPKGVRRTFK 267
PGIPV+L + S G+ P ++ KRGK G R AL++VQHSTASMG++DE R EPE+ K +G +R+F+
Sbjct: 140 PGIPVNL-----ESSTGSDPS-------SNRKRGKQGVRSALQLVQHSTASMGRYDEVRYGEPEK-KIRGKKRSFR 202 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86621.16221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86621.16221.1 >prot_H-elongata_contig86621.16221.1 ID=prot_H-elongata_contig86621.16221.1|Name=mRNA_H-elongata_contig86621.16221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp RAKNEERAGGTPKPGIPVDLAPGRKDRSDGAAPRGGAKGGVASVKRGKDGback to top mRNA from alignment at H-elongata_contig86621:116..1457+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86621.16221.1 ID=mRNA_H-elongata_contig86621.16221.1|Name=mRNA_H-elongata_contig86621.16221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1342bp|location=Sequence derived from alignment at H-elongata_contig86621:116..1457+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86621:116..1457+ >mRNA_H-elongata_contig86621.16221.1 ID=mRNA_H-elongata_contig86621.16221.1|Name=mRNA_H-elongata_contig86621.16221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig86621:116..1457+ (Himanthalia elongata Himel1 dioecious)back to top |