mRNA_H-elongata_contig8648.16212.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig8648.16212.1 vs. uniprot
Match: D7FMP7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI) HSP 1 Score: 410 bits (1054), Expect = 2.640e-123 Identity = 371/619 (59.94%), Postives = 406/619 (65.59%), Query Frame = 2
Query: 389 KEGRPMWCPXXXXXXXXXXXXXXXXXXXXXXXXXXXYDKDRIRRRCRLHKLGDMVXXXXXXXXXXXXXXXXXXGFPGLKPRFCSEHKQDGMLNLKTRAFRCKYRGPMDREPGDMADDPLMPMPAGKSAPCNRACRFAYPGEEAIYCAKHKMNGMVDVVNPSCKMQDCPEEPTHXXXXXXXXXXXXXXXVGMKSIPVLRPAGLHWSAELRRQATQTARERSKLEADMETGSARCTPLPPKASTLEEKRLRQQEAAMAAIEAAAASVRGPEAHAANIALNSREMLSASTAPIVPPFVHEQELGPS---SITSAELALAFSGLNDDDMGGAAASPSAEP------------------PSLPGIGTDDLSRSPLPVA--PESGPAKKRRRAAEVNAVTTFSQAPSPNTYASAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTL----------MAMGTVPI--VSSAPMXXXXXXXXXXXXVSLPGGAGVS------DALLASPTTPTDQQAMAAAAAVAVASGIPPVVMTGAPVVPPVGSKCAVADCVAPATFGHPGPGHVPTHCLTHCEEGMHRLAADEAR-SPL 2119
KEGRPMWCP XXXXXXXXXXXXXXXXXXXXXXXXX YD+DRIRRRCRLHKL DMVXXXXXXXXXXXXXXXXX GFPGLKPRFCSEHKQDGMLNLKTRAFRCKYRG +ADDP+MP+PAGK+ PCNRACR+AYPGEEA+YC KHK+NGMVDV+NPSC XXXXXXXXXXXXXXX MK I +P GLHWSAELRRQAT ARER+K+EA+ME GSARCTPLPPKA T EEKR+R RGPEA AAN+ALNSREMLSAST PIVPPF +E+ SITSAELALAFSGL +DDM AAA+ P+LPGIGT+ L R+ P A P+SGPAKKRRR ++ +A T +SAA XXXXXXXXXXXX XXXXXXXXXXXXXXX +A G VP+ VS+A XXXXXXXXXXXX +A+L+SP VM GA VVP +GSKCAVADC APATFGHPGPGHVPTHCLTHCEEGMHRLAAD R +PL
Sbjct: 209 KEGRPMWCPDXXXXXXXXXXXXXXXXXXXXXXXXXGYDRDRIRRRCRLHKLDDMVXXXXXXXXXXXXXXXXXCGFPGLKPRFCSEHKQDGMLNLKTRAFRCKYRGVAGL---GIADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKPIAAQKPTGLHWSAELRRQATANARERNKMEAEMEAGSARCTPLPPKAGTPEEKRMRXXXXXXXXXXXXXXXXRGPEAAAANMALNSREMLSASTYPIVPPFTTNEEVAAPPGMSITSAELALAFSGLPEDDMHSAAAAXXXXXXXXXXXXXXXXXXXXPPLPALPGIGTEHLGRAVAPAAGTPDSGPAKKRRRGSDGSATPTSGPGVDAYEASSAAXXXXXXXXXXXXXSTVQYADHAAYHAALSSEMMAGLMPSMMQTIGELPXXXXXXXXXXXXXXXXXXXXXXLSSAEALAHGFVPVPMVSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAMLSSPEA---------------------FVMAGA-VVPAIGSKCAVADCAAPATFGHPGPGHVPTHCLTHCEEGMHRLAADADRVAPL 802
BLAST of mRNA_H-elongata_contig8648.16212.1 vs. uniprot
Match: A0A6H5KYH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE) HSP 1 Score: 355 bits (912), Expect = 6.160e-102 Identity = 382/865 (44.16%), Postives = 432/865 (49.94%), Query Frame = 2
Query: 389 KEGRPMWCPXXXXXXXXXXXXXXXXXXXXXXXXXXXYDK--------------DRIRRRCRLHKLGDMVXXXXXXXXXXXXXXXXXXGFPGLKPRFCSEHKQDGMLNLK-------------------------------------------------------------------TRAFRCKYRGPMDREPGDMADDPLMPMPAGKSAPCNRACRFAYPGEEAIYCAKHKMNGMVDVVNPSCKMQDCPEEPTHXXXXXXXXXXXXXXXVGMKSIPVLRPAGLHWSAELRRQATQTARERSKLEADMETGSARCTPLPPKASTLEEKRLRQQEAAMAAIEAAAASVRGPEAHAANIALNSREMLSASTAPIVPPFVHEQELGPS---SITSAELALAFSGLNDDDMGGAAASP---------------------SAEPPSLPGIGTDDLSRSP-LPVAP-------ESGPAKKRRRAAEVNAVTTFSQAPSPNTYASAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHT-----------------LMAMGTVPIVSSAPMXXXXXXXXXXXXVSLPGGAGVS------DALLASPTTPTDQQAMAAAAAVAVASGIPPVVMTGAPVVPPVGSKCAVADCVAPATFGHPGPGHVPTHCLTHCEEGMHRLAADEAR-SPLGGRVAGKGKRKADDSNILTPPVQAHLAPVSTASLAAAPAVQAVPPPPAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPTPESNHVAITTLKVEKPEELGRGKRIKKRTAVAHEGMMLLAGAVASHS 2572
KEGRPMWCP DRIRRRCRLHKL DMV GFPGLKPRFCSEHKQDGMLNLK TRAFRCKYRG +ADDP+MP+PAGK+ PCNRACR+AYPGEEA+YC KHK+NGMVDV+NPSCK VGMK I +P GLHW+AELRRQAT ARER+K+EA+ME GSARCTPLPPKA T EEKR+R RGPEA AAN+ALNSREMLSAST PIVPPF +E+ SITSAELALAFSGL +DDM AAA+ S P+LPGIGT+ L R+ LP +SGPAKKRRR ++ +A T P + Y +++ XXXXXXXXXXXXXXXX XXXXXXXXXX + VP+VS+A XXXXXXXXXXXX +A+L+SP VM GA VVP +GSKCAVADC APATFGHPGPGHVPTHCLTHCEEGMHRLAAD R +PL ++ PP T+S+ AA V+A A+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PP P +KV EE G+ K+ KK+ A EG+MLLAGAVASH+
Sbjct: 209 KEGRPMWCPDHRPPGSFDVKTSRCQEPSCLKHPRHDTRSTKAHRQIVSARVQWDRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLKVPYRRCLNTTTPPSPVFAIGVGFSSLAWQRRCKTSPPLGVCHRGIGFSSPANDVVKQANSLRELGNQTRAFRCKYRGVAGL---GIADDPMMPLPAGKTQPCNRACRYAYPGEEAVYCQKHKLNGMVDVINPSCKAH---------------------MAVGMKPIAAQKPTGLHWNAELRRQATANARERNKMEAEMEAGSARCTPLPPKAGTPEEKRMRXXXXXXXXXXXXXXXXRGPEAAAANMALNSREMLSASTYPIVPPFTTNEEMAAPPGMSITSAELALAFSGLPEDDMHSAAAAXXXXXXXXXXXXXXXXXXXXXFSPPLPALPGIGTEHLGRAAALPXXXXXXXXXXDSGPAKKRRRGSDGSATPT--SGPGVDAYEASSVAAAXXXXXXXXXXXXXXXXVQFADQAAYHAALSSEMMAGLMPSMMQPIGELPXXXXXXXXXXXXXXXXXXXXXXLSSADALVHGFVPVPMVSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAMLSSPEA---------------------FVMAGA-VVPAIGSKCAVADCAAPATFGHPGPGHVPTHCLTHCEEGMHRLAADADRVAPLP---------------LVAPPEN------GTSSVPAAGPVEA------AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLEAAATAEPPPVP---------MKV---EETGKVKKNKKKAPAAGEGIMLLAGAVASHT 986
BLAST of mRNA_H-elongata_contig8648.16212.1 vs. uniprot
Match: D7FQ52_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.050e-32 Identity = 105/221 (47.51%), Postives = 124/221 (56.11%), Query Frame = 2
Query: 497 YDKDRIRRRCRLHKLGDMVXXXXXXXXXXXXXXXXXXGFPGLKPRFCSEHKQDGMLNLKTRAFRCKYRGPMDREPGDMADDPLMPMPA-------GKSAP-----------CNRACRFAYPGEEAIYCAKHKMNGMVDVVNPSCKMQDCPEEPTHXXXXXXXXXXXXXXXVGMKSIPVLRPAGLHWSAELRRQATQTARERSKLEADMETGSARCTPLPPK 1105
+ DR+RRRCRL XXXXXXXXXXXXXXXX G G K RFCSEHKQ+GM+NLKTRAFRCK+RG + +P GK AP CNRACRFAYP E A+YCA H + GMVDV+NP C M DC E PT+ GM+ I LHWS+E RRQA +A E ++ + GSA+ + LPPK
Sbjct: 246 FKTDRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLKTRAFRCKHRG--EPKPXXXXXXXXXXXXXXXXXTRNGKGAPPNKKKSRRAVTCNRACRFAYPNEMAVYCAVHALEGMVDVLNPQCSMDDCLEIPTYGFAGEQPTFCMVHSGPGMQVIMPQSTNVLHWSSEARRQAAASALEAKRIAGLRQAGSAKVSTLPPK 464 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8648.16212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8648.16212.1 >prot_H-elongata_contig8648.16212.1 ID=prot_H-elongata_contig8648.16212.1|Name=mRNA_H-elongata_contig8648.16212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=873bp MVNLIGRRCAVDNCETYASYGNTGEKARYCAKHKGTDMVNLTVKHCEFQGback to top mRNA from alignment at H-elongata_contig8648:21..9276- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8648.16212.1 ID=mRNA_H-elongata_contig8648.16212.1|Name=mRNA_H-elongata_contig8648.16212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=9256bp|location=Sequence derived from alignment at H-elongata_contig8648:21..9276- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8648:21..9276- >mRNA_H-elongata_contig8648.16212.1 ID=mRNA_H-elongata_contig8648.16212.1|Name=mRNA_H-elongata_contig8648.16212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5238bp|location=Sequence derived from alignment at H-elongata_contig8648:21..9276- (Himanthalia elongata Himel1 dioecious)back to top |