mRNA_H-elongata_contig84455.16057.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84455.16057.1
Unique NamemRNA_H-elongata_contig84455.16057.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: A0A835YSG5_9STRA (U2 snRNP protein Rds3p n=2 Tax=Eukaryota TaxID=2759 RepID=A0A835YSG5_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.440e-46
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 KGDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
            K DGKCV+CDS VRPCTLV ICDECNYGSYEGRC +CGG GISDAYYCRECTQQEKDRDGCPKIVNLGSSKT
Sbjct:   25 KCDGKCVVCDSYVRPCTLVRICDECNYGSYEGRCVICGGVGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 96
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: K3WVY7_GLOUD (Uncharacterized protein n=20 Tax=Eukaryota TaxID=2759 RepID=K3WVY7_GLOUD)

HSP 1 Score: 152 bits (383), Expect = 3.440e-46
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 KGDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
            K DGKCVICDS VRPCTLVHICDECNYGSY+GRC +CGG GISDAYYCRECTQ EKDRDGCPKIVNLGSSKT
Sbjct:   25 KDDGKCVICDSYVRPCTLVHICDECNYGSYQGRCVICGGPGISDAYYCRECTQLEKDRDGCPKIVNLGSSKT 96
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: A0A1Y1W4V1_9FUNG (PHD finger-like domain-containing protein 5A-like protein n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1W4V1_9FUNG)

HSP 1 Score: 149 bits (377), Expect = 2.830e-45
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 KGDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
            K DGKCVICDS VRPCT+VHICDECNYGSY+GRC VCGG GISDAYYC+ECT QEKDRDGCPKIVNLGSSKT
Sbjct:   25 KCDGKCVICDSFVRPCTIVHICDECNYGSYQGRCVVCGGPGISDAYYCKECTIQEKDRDGCPKIVNLGSSKT 96
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: T2MAP9_HYDVU (PHD finger-like domain-containing protein 5A n=4 Tax=Opisthokonta TaxID=33154 RepID=T2MAP9_HYDVU)

HSP 1 Score: 148 bits (373), Expect = 1.150e-44
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    1 KGDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
            K DGKCVICDS VRPCTLV ICDECNYGSY+GRC +CGG G+SDAYYC+ECT QEKDRDGCPKIVNLGSSKT
Sbjct:   25 KDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTMQEKDRDGCPKIVNLGSSKT 96
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: UPI0018E2BE22 (PHD finger-like domain-containing protein 5A isoform X3 n=1 Tax=Arvicola amphibius TaxID=1047088 RepID=UPI0018E2BE22)

HSP 1 Score: 147 bits (371), Expect = 1.190e-44
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    4 GDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
            GDGKCVICDS VRPCTLV ICDECNYGSY+GRC +CGG G+SDAYYC+ECT QEKDRDGCPKIVNLGSSKT
Sbjct:    4 GDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKT 74
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: M4E1W9_BRARP (Uncharacterized protein n=15 Tax=Eukaryota TaxID=2759 RepID=M4E1W9_BRARP)

HSP 1 Score: 149 bits (375), Expect = 1.230e-44
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:    1 KGDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
            K DGKCV+CDS VRPCTLV ICDECNYGS++GRCT+CGG GISDAYYC+ECTQQEKDRDGCPKIVNLGS+KT
Sbjct:   50 KCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCTICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT 121
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: A0A7K8NK19_CASCA (PHF5A protein (Fragment) n=1 Tax=Casuarius casuarius TaxID=8787 RepID=A0A7K8NK19_CASCA)

HSP 1 Score: 147 bits (372), Expect = 1.360e-44
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    1 KGDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
             GDGKCVICDS VRPCTLV ICDECNYGSY+GRC +CGG G+SDAYYC+ECT QEKDRDGCPKIVNLGSSKT
Sbjct:   25 SGDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKT 96
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: UPI001B8781E5 (PHD finger-like domain-containing protein 5A isoform X1 n=1 Tax=Pyrgilauda ruficollis TaxID=221976 RepID=UPI001B8781E5)

HSP 1 Score: 148 bits (373), Expect = 1.380e-44
Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 KGDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
            +GDGKCVICDS VRPCTLV ICDECNYGSY+GRC +CGG G+SDAYYC+ECT QEKDRDGCPKIVNLGSSKT
Sbjct:   31 EGDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKT 102
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: A0A7K9AYV4_DRONO (PHF5A protein (Fragment) n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=A0A7K9AYV4_DRONO)

HSP 1 Score: 147 bits (372), Expect = 1.640e-44
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    1 KGDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
             GDGKCVICDS VRPCTLV ICDECNYGSY+GRC +CGG G+SDAYYC+ECT QEKDRDGCPKIVNLGSSKT
Sbjct:   25 SGDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKT 96
[Close]
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Match: A0A2I0MJL9_COLLI (PHD finger protein 5A n=10 Tax=Neognathae TaxID=8825 RepID=A0A2I0MJL9_COLLI)

HSP 1 Score: 147 bits (371), Expect = 1.660e-44
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    4 GDGKCVICDSLVRPCTLVHICDECNYGSYEGRCTVCGGAGISDAYYCRECTQQEKDRDGCPKIVNLGSSKT 216
            GDGKCVICDS VRPCTLV ICDECNYGSY+GRC +CGG G+SDAYYC+ECT QEKDRDGCPKIVNLGSSKT
Sbjct:   15 GDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKT 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84455.16057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSG5_9STRA3.440e-4690.28U2 snRNP protein Rds3p n=2 Tax=Eukaryota TaxID=275... [more]
K3WVY7_GLOUD3.440e-4690.28Uncharacterized protein n=20 Tax=Eukaryota TaxID=2... [more]
A0A1Y1W4V1_9FUNG2.830e-4588.89PHD finger-like domain-containing protein 5A-like ... [more]
T2MAP9_HYDVU1.150e-4486.11PHD finger-like domain-containing protein 5A n=4 T... [more]
UPI0018E2BE221.190e-4487.32PHD finger-like domain-containing protein 5A isofo... [more]
M4E1W9_BRARP1.230e-4486.11Uncharacterized protein n=15 Tax=Eukaryota TaxID=2... [more]
A0A7K8NK19_CASCA1.360e-4486.11PHF5A protein (Fragment) n=1 Tax=Casuarius casuari... [more]
UPI001B8781E51.380e-4486.11PHD finger-like domain-containing protein 5A isofo... [more]
A0A7K9AYV4_DRONO1.640e-4486.11PHF5A protein (Fragment) n=1 Tax=Dromaius novaehol... [more]
A0A2I0MJL9_COLLI1.660e-4487.32PHD finger protein 5A n=10 Tax=Neognathae TaxID=88... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84455contigH-elongata_contig84455:363..899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84455.16057.1prot_H-elongata_contig84455.16057.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84455 410..892 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.6488113-UTR-H-elongata_contig84455:362..4091622931249.6488113-UTR-H-elongata_contig84455:362..409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84455 363..409 -
1691679759.411683-UTR-H-elongata_contig84455:362..4091691679759.411683-UTR-H-elongata_contig84455:362..409Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84455 363..409 -
1622931249.7111602-UTR-H-elongata_contig84455:892..8991622931249.7111602-UTR-H-elongata_contig84455:892..899Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84455 893..899 -
1691679759.4404619-UTR-H-elongata_contig84455:892..8991691679759.4404619-UTR-H-elongata_contig84455:892..899Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84455 893..899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.6699197-CDS-H-elongata_contig84455:409..5121622931249.6699197-CDS-H-elongata_contig84455:409..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84455 410..512 -
1691679759.4211824-CDS-H-elongata_contig84455:409..5121691679759.4211824-CDS-H-elongata_contig84455:409..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84455 410..512 -
1622931249.6872494-CDS-H-elongata_contig84455:806..8921622931249.6872494-CDS-H-elongata_contig84455:806..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84455 807..892 -
1691679759.4307573-CDS-H-elongata_contig84455:806..8921691679759.4307573-CDS-H-elongata_contig84455:806..892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84455 807..892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84455.16057.1

>prot_H-elongata_contig84455.16057.1 ID=prot_H-elongata_contig84455.16057.1|Name=mRNA_H-elongata_contig84455.16057.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MVSASSVIPSCAPVRWSTSAMSATTARMRGGAPYAVEPASLTRTTAENAP
SRKKTAMAAPRS*
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mRNA from alignment at H-elongata_contig84455:363..899-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84455.16057.1 ID=mRNA_H-elongata_contig84455.16057.1|Name=mRNA_H-elongata_contig84455.16057.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig84455:363..899- (Himanthalia elongata Himel1 dioecious)
AAAGGTGATGGTAAGTGCGTCATCTGTGATTCCCTCGTGCGCCCCTGTAC
GCTGGTCCACATCTGCGATGAGTGCAACTACGGCTCGTATGAGGTGAGAA
TGGAAAGGCAGGCTTTGCTGGTGACTCGGCCCGCTTTGACCAGAAAACAC
CACTTCGACAGGCCCGCCGCCTTTAAAGTTATTGTAGCCGGTACCGCGTC
TGTAAACGAACTCTACAGTAGCCCTAGTAGTAGTGGTCATCATCGTAGCA
GTAACTGACCGTAGTCGACTCAGCAACGATAATATTTTCGCCCCCGTGCA
TCGTCCACTTCCGCTTCTTATATTACTGTCATTATGGGTGCTTCATATTA
AGTGTGCGCGTGTGCGTCATGTCGATGCCGATTTCAGGGGAGGTGCACCG
TATGCGGTGGAGCCGGCATCTCTGACGCGTACTACTGCCGAGAATGCACC
CAGCAGGAAAAAGACCGCGATGGCTGCCCCAAGATCGTGAACTTGGGTAG
CTCGAAGACGGTGAAGAGAATATCGGATTTGCGTGTA
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Coding sequence (CDS) from alignment at H-elongata_contig84455:363..899-

>mRNA_H-elongata_contig84455.16057.1 ID=mRNA_H-elongata_contig84455.16057.1|Name=mRNA_H-elongata_contig84455.16057.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig84455:363..899- (Himanthalia elongata Himel1 dioecious)
ATGGTAAGTGCGTCATCTGTGATTCCCTCGTGCGCCCCTGTACGCTGGTC
CACATCTGCGATGAGTGCAACTACGGCTCGTATGAGATGGTAAGTGCGTC
ATCTGTGATTCCCTCGTGCGCCCCTGTACGCTGGTCCACATCTGCGATGA
GTGCAACTACGGCTCGTATGAGGGGAGGTGCACCGTATGCGGTGGAGCCG
GCATCTCTGACGCGTACTACTGCCGAGAATGCACCCAGCAGGAAAAAGAC
CGCGATGGCTGCCCCAAGATCGTGAGGGAGGTGCACCGTATGCGGTGGAG
CCGGCATCTCTGACGCGTACTACTGCCGAGAATGCACCCAGCAGGAAAAA
GACCGCGATGGCTGCCCCAAGATCGTGA
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