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Homology
BLAST of mRNA_H-elongata_contig84139.16025.1 vs. uniprot
Match: A0A6H5KHQ5_9PHAE (FAD-binding PCMH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ5_9PHAE) HSP 1 Score: 180 bits (457), Expect = 2.450e-45 Identity = 155/460 (33.70%), Postives = 181/460 (39.35%), Query Frame = 1
Query: 157 ADADSEVVIRNLAWATHPALGRRCPVGGISTRHSQAEYYGSV---GEGMALVVTTPEEE----EAQREEEGRMPSFRDISSLLYDYAVLRGLRPSLEALTSRTSILLAS---------------------------------------------------KPSADRVNLRGFS-AGCERTWDGDAAPSESTSKSSVFETMHFFLDRLPVWLLRGLAIIVRRLPRSRRTNCYRTEGLSRPPPAASCNRLAEGGEGLERFSNMAVAETDQEAREKCLAGDGEGTVMIASGSSVAVEDEVIADMDADAGANNSGGVDRLVEARGRALPRICEPGTPQSTKRCGPGVDIIALVERLDRLTALPSVYEPFTWQRYFFDSALRVPRALTPEGYALEASIASELLIQNLEGGLRCGDANTKASPERRDEVLQELALQIKTHRAGGLRCGVSDDRLYREEEEDACPEG 1359
A++ +VVIRNLAWATHP LG ++ + A G V G GMA VV E EGRMPSFR+IS LLYDYAVLRG+RPSLEAL R+S AS P+A L+G AG G PS F+ MH LDR PVW L+GLA + R+ G+ GG R GR P I A + RLD+L ALPSVYE FTWQ YFFDSALRVP L P GYALE ++ASELL ++L GG G KASPERR +L+EL LQI+THR+GGLRCG D PEG
Sbjct: 76 AESRPDVVIRNLAWATHPVLGLGDSSAIVARKRDPAVCGGGVAQEGGGMADVVAGRAAECTAAVGSGAREGRMPSFREISGLLYDYAVLRGMRPSLEALAMRSSFAAASVSPPPATPPGTPCVAHSGDTSGGRWSSSPSCPQSPYXXXXXGGSGEGRRGNPPTAGDGGLQGRGEAGLLHLRGGGLKPS---LPRLAFDAMHLLLDRSPVWALQGLAALAERV------------GVF-------------GGSSGHRHGXXXXXXX-------------------------------------------------XXXXXGRRRPGIS------------------ATLRRLDKLAALPSVYETFTWQVYFFDSALRVPEGLKPAGYALETALASELLQRSLPGGAEEG---AKASPERRQSILRELGLQIRTHRSGGLRCGGRGDDTRTSLRAGGAPEG 437
BLAST of mRNA_H-elongata_contig84139.16025.1 vs. uniprot
Match: D7FUE9_ECTSI (Alkylglycerone-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE9_ECTSI) HSP 1 Score: 174 bits (441), Expect = 3.180e-43 Identity = 151/458 (32.97%), Postives = 185/458 (40.39%), Query Frame = 1
Query: 157 ADADSEVVIRNLAWATHPALGRRCPVGGISTRHSQAEYYGSVGEG----MALVVT--TPEEEEA--QREEEGRMPSFRDISSLLYDYAVLRGLRPSLEALTSRTSILLAS--KPSADRVNLRGFSAGCERTWDG------------DAAPSESTSKSS-----------------------------------VFETMHFFLDRLPVWLLRGLAIIVRRLPRSRRTNCYRTEGLSRPPPAASCNRLAEGGEGLERFSNMAVAETDQEAREKCLAGDGEGTVMIASGSSVAVEDEVIADMDADAGANNSGGVDRLVEARGRALPRICEPGTPQSTKRCGPGVDIIALVERLDRLTALPSVYEPFTWQRYFFDSALRVPRALTPEGYALEASIASELLIQNLEGGLRCGDANTKASPERRDEVLQELALQIKTHRAGGLRCGVSDDRLYREEEEDACPEG 1359
A++ +VVIRNLAWATHP LG G I R MA VV T E + A EGRMPSFR+IS LLYDYAVLRG+RPSLEAL R+S AS P+A + G + + G +PS + + F+ MH LDR PVW L+GLA + R+ ++ YR G SGG R +R G I + RLD+L ALP+VYE FTWQ YFFDSALRVP L P GYALE ++ASELL ++L GG G KASPERR +L+EL LQI+THR+GGLRCG + + PEG
Sbjct: 472 AESRPDVVIRNLAWATHPVLGLGGS-GAIVARKRDTTVXXXXXXXXXXXMAAVVAGRTAERKGAVGSGAGEGRMPSFREISGLLYDYAVLRGMRPSLEALAMRSSFAAASVSSPAATAPGTPCVAGGGDTSGGGLSSSRSRPQSPYPPSPSGGSGEGQRGNPPTAGDGGFQGRREAGLLLLRGGGLRPSLPRLAFDAMHLLLDRSPVWALQGLAALAERVGVFGGSSGYRHGG--------------------------------------------------------------------------SGGXXXXXXXR----------------RRTG----ITVTLRRLDKLAALPAVYETFTWQEYFFDSALRVPEGLKPAGYALETALASELLQRSLPGGAEEG---AKASPERRQSILRELGLQIRTHRSGGLRCGGRGNDTGTSLQVGGAPEG 831
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 171.0 |
| Seed ortholog evalue | 1.3e-39 |
| Seed eggNOG ortholog | 2880.D7FUE9 |
| Preferred name | AGPS |
| KEGG rclass | RC00004,RC00020,RC02886 |
| KEGG ko | ko:K00803,ko:K13356 |
| KEGG Reaction | R04311,R09470 |
| KEGG Pathway | ko00073,ko00565,ko01100,ko04146,ko04212,map00073,map00565,map01100,map04146,map04212 |
| GOs | GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006605,GO:0006625,GO:0006629,GO:0006662,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008609,GO:0008610,GO:0008611,GO:0009058,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016740,GO:0016765,GO:0018904,GO:0031090,GO:0031903,GO:0031907,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042579,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043574,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046485,GO:0046504,GO:0046907,GO:0048037,GO:0050660,GO:0050662,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071949,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097384,GO:0098588,GO:0098805,GO:1901265,GO:1901363,GO:1901503,GO:1901576 |
| EggNOG free text desc. | alkylglycerone-phosphate synthase activity |
| EggNOG OGs | COG0277@1,COG3320@1,KOG1221@2759,KOG1233@2759 |
| EC | 1.2.1.84,2.5.1.26 |
| COG Functional cat. | C |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1422 |
| Cds size | 1419 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931246.403172-CDS-H-elongata_contig84139:325..1509 | 1622931246.403172-CDS-H-elongata_contig84139:325..1509 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig84139 326..1509 + |
| 1691679758.080267-CDS-H-elongata_contig84139:325..1509 | 1691679758.080267-CDS-H-elongata_contig84139:325..1509 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig84139 326..1509 + |
| 1622931246.4172807-CDS-H-elongata_contig84139:2367..2602 | 1622931246.4172807-CDS-H-elongata_contig84139:2367..2602 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig84139 2368..2602 + |
| 1691679758.0922627-CDS-H-elongata_contig84139:2367..2602 | 1691679758.0922627-CDS-H-elongata_contig84139:2367..2602 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig84139 2368..2602 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84139.16025.1 >prot_H-elongata_contig84139.16025.1 ID=prot_H-elongata_contig84139.16025.1|Name=mRNA_H-elongata_contig84139.16025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=473bp
RIAPGTNSGDSTGVHRGQGVGNVADPRTPPHAEALDISPQTLTRPGGKDC YDADADSEVVIRNLAWATHPALGRRCPVGGISTRHSQAEYYGSVGEGMAL VVTTPEEEEAQREEEGRMPSFRDISSLLYDYAVLRGLRPSLEALTSRTSI LLASKPSADRVNLRGFSAGCERTWDGDAAPSESTSKSSVFETMHFFLDRL PVWLLRGLAIIVRRLPRSRRTNCYRTEGLSRPPPAASCNRLAEGGEGLER FSNMAVAETDQEAREKCLAGDGEGTVMIASGSSVAVEDEVIADMDADAGA NNSGGVDRLVEARGRALPRICEPGTPQSTKRCGPGVDIIALVERLDRLTA LPSVYEPFTWQRYFFDSALRVPRALTPEGYALEASIASELLIQNLEGGLR CGDANTKASPERRDEVLQELALQIKTHRAGGLRCGVSDDRLYREEEEDAC PEGMGTGGALIEKDGGGEGRFGF back to topmRNA from alignment at H-elongata_contig84139:326..2603+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig84139.16025.1 ID=mRNA_H-elongata_contig84139.16025.1|Name=mRNA_H-elongata_contig84139.16025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2278bp|location=Sequence derived from alignment at H-elongata_contig84139:326..2603+ (Himanthalia elongata Himel1 dioecious) CGCATTGCACCAGGCACCAATAGCGGTGATAGTACGGGCGTCCATCGTGG
TCAGGGTGTGGGCAACGTCGCCGATCCTCGAACTCCGCCGCACGCCGAAG
CGTTAGACATATCGCCGCAAACTCTCACCCGGCCAGGTGGTAAAGATTGT
TACGATGCTGATGCGGACTCTGAAGTGGTCATAAGGAATCTGGCGTGGGC
AACGCATCCTGCCCTTGGGCGGAGATGTCCCGTAGGGGGCATTTCGACGC
GTCACAGCCAAGCAGAATATTATGGTTCCGTCGGCGAAGGTATGGCTTTA
GTCGTAACAACGCCGGAAGAAGAGGAGGCGCAGCGAGAAGAAGAGGGTCG
AATGCCGTCATTCCGAGATATTTCTAGTCTCCTGTACGACTATGCGGTCC
TCCGCGGACTGCGGCCGTCCCTCGAGGCCCTGACTTCCAGAACCTCGATT
CTCTTGGCTTCGAAGCCATCCGCCGATCGCGTCAACCTTCGCGGTTTTTC
TGCCGGCTGCGAACGAACTTGGGATGGTGATGCCGCGCCTTCGGAGTCCA
CCTCCAAGTCGTCGGTGTTCGAGACGATGCATTTTTTCCTCGACAGGCTC
CCCGTTTGGCTCCTCCGAGGGCTCGCGATTATCGTGCGACGGCTGCCGCG
CTCGCGTCGAACGAACTGTTACCGCACCGAGGGACTCAGCCGCCCACCGC
CAGCTGCGTCTTGCAATCGCCTTGCCGAAGGCGGGGAAGGCTTGGAGAGA
TTCTCGAACATGGCCGTGGCGGAGACTGACCAAGAAGCGAGGGAAAAATG
CCTGGCGGGCGATGGAGAAGGCACGGTAATGATCGCCTCGGGATCTTCAG
TTGCGGTGGAAGATGAAGTGATCGCGGACATGGATGCAGACGCAGGCGCA
AATAACTCGGGTGGCGTAGACAGGCTCGTGGAGGCTAGGGGAAGAGCACT
CCCAAGGATTTGTGAACCCGGAACGCCGCAATCGACGAAGCGCTGCGGTC
CGGGCGTTGATATCATTGCTTTGGTGGAGCGTCTCGACCGGCTCACGGCA
TTGCCCTCTGTGTATGAGCCCTTCACCTGGCAGCGGTACTTCTTCGACTC
CGCGCTGCGCGTACCGCGCGCGCTGACGCCGGAAGGCTACGCTCTTGAGG
CCTCGATTGCTTCGGAGCTATTGATCCAGAACCTGTGAGCCGATCGACAG
TAGCGTAACCGTTGCCCCTCGGCGTCGGTGCATTGCTCTTTGGTTTTATT
GTAACCATCTCTTTTGGTGCATTAGTCTAATCGTCTTCAGCGGGGCTTGG
TTGGGAGTTAATGTCATGCAAGAGGAGACTGCTACGGTTCAACGCAGAGC
GATTCGCGTTGTGTAGCGAGTCGTTTCGCGGGGAGTCACGCACATAGACG
ATAGCGTGTCGTGTTCGCCTTGGATCGTAGCACCTCTCGGTTTCCCTTGT
AAATCATGTACCATGTAGCGCATGTATCATATAGCATCCTCCTCTCTGCG
CTCTGTGTAGTCTGTCTGCAGATAAATGGCTGACGAAATAGTGATGCCGG
ACACGTAGATAATCCCATGTGTGTGCGTGTGTGTGTTTGTGATTAAGGAA
GGAACATGCTCGAGGGCCATCAAAATGGTATGCTAAAACAGTTCCTTTGC
ACCTTAACACAACTCATTATTAATAGCAGTTGGAGGGTGAGGTGACTAGC
CTTATTTGTACGTGCTGACGATATTTATGGGTATTTATGGGTATTTATGG
GTATTGTCAGCAATTGGATATACGACTAAGTGACTAGTGATTATAGTCGT
GACGGGGACAAAGATCGTTTTGGGGTGGGCCTTGCGAGTATCACACAATA
GGAAAATACTAAGCGTGTTCTAGATATTACTAGTTAGATGCTCTCAGAAT
TTCTACCCCAGCGCACTCGGTCTGTGTATAGTCTACCCCTCCTCTCCCCA
AATGTTCAGCCGCTATCGCCATCATTCATCATTCATCTACTGGATCCCAT
TTTTACGCGCGTTTTTTTATTTGTACGTTAACTTACTCCCAGAGAGGGCG
GCTTACGATGCGGGGACGCCAACACCAAGGCTAGTCCGGAGCGCCGAGAT
GAGGTTCTCCAGGAACTGGCGCTGCAGATAAAGACCCACCGAGCGGGCGG
CTTACGATGTGGAGTGAGCGACGATCGTCTCTATCGAGAAGAGGAGGAGG
ATGCTTGTCCAGAGGGGATGGGGACGGGGGGGGCTCTCATTGAAAAGGAT
GGAGGCGGAGAGGGTCGGTTTGGCTTCC back to topCoding sequence (CDS) from alignment at H-elongata_contig84139:326..2603+ >mRNA_H-elongata_contig84139.16025.1 ID=mRNA_H-elongata_contig84139.16025.1|Name=mRNA_H-elongata_contig84139.16025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2838bp|location=Sequence derived from alignment at H-elongata_contig84139:326..2603+ (Himanthalia elongata Himel1 dioecious) CGCATTGCACCAGGCACCAATAGCGGTGATAGTACGGGCGTCCATCGTGG TCAGGGTGTGGGCAACGTCGCCGATCCTCGAACTCCGCCGCACGCCGAAG CGTTAGACATATCGCCGCAAACTCTCACCCGGCCAGGTGGTAAAGATTGT TACGATGCTGATGCGGACTCTGAAGTGGTCATAAGGAATCTGGCGTGGGC AACGCATCCTGCCCTTGGGCGGAGATGTCCCGTAGGGGGCATTTCGACGC GTCACAGCCAAGCAGAATATTATGGTTCCGTCGGCGAAGGTATGGCTTTA GTCGTAACAACGCCGGAAGAAGAGGAGGCGCAGCGAGAAGAAGAGGGTCG AATGCCGTCATTCCGAGATATTTCTAGTCTCCTGTACGACTATGCGGTCC TCCGCGGACTGCGGCCGTCCCTCGAGGCCCTGACTTCCAGAACCTCGATT CTCTTGGCTTCGAAGCCATCCGCCGATCGCGTCAACCTTCGCGGTTTTTC TGCCGGCTGCGAACGAACTTGGGATGGTGATGCCGCGCCTTCGGAGTCCA CCTCCAAGTCGTCGGTGTTCGAGACGATGCATTTTTTCCTCGACAGGCTC CCCGTTTGGCTCCTCCGAGGGCTCGCGATTATCGTGCGACGGCTGCCGCG CTCGCGTCGAACGAACTGTTACCGCACCGAGGGACTCAGCCGCCCACCGC CAGCTGCGTCTTGCAATCGCCTTGCCGAAGGCGGGGAAGGCTTGGAGAGA TTCTCGAACATGGCCGTGGCGGAGACTGACCAAGAAGCGAGGGAAAAATG CCTGGCGGGCGATGGAGAAGGCACGGTAATGATCGCCTCGGGATCTTCAG TTGCGGTGGAAGATGAAGTGATCGCGGACATGGATGCAGACGCAGGCGCA AATAACTCGGGTGGCGTAGACAGGCTCGTGGAGGCTAGGGGAAGAGCACT CCCAAGGATTTGTGAACCCGGAACGCCGCAATCGACGAAGCGCTGCGGTC CGGGCGTTGATATCATTGCTTTGGTGGAGCGTCTCGACCGGCTCACGGCA TTGCCCTCTGTGTATGAGCCCTTCACCTGGCAGCGGTACTTCTTCGACTC CGCGCTGCGCGTACCGCGCGCGCTGACGCCGGAAGGCTACGCTCTTGAGG CCTCGATTGCTTCGGAGCTATTGATCCAGAACCTCGCATTGCACCAGGCA CCAATAGCGGTGATAGTACGGGCGTCCATCGTGGTCAGGGTGTGGGCAAC GTCGCCGATCCTCGAACTCCGCCGCACGCCGAAGCGTTAGACATATCGCC GCAAACTCTCACCCGGCCAGGTGGTAAAGATTGTTACGATGCTGATGCGG ACTCTGAAGTGGTCATAAGGAATCTGGCGTGGGCAACGCATCCTGCCCTT GGGCGGAGATGTCCCGTAGGGGGCATTTCGACGCGTCACAGCCAAGCAGA ATATTATGGTTCCGTCGGCGAAGGTATGGCTTTAGTCGTAACAACGCCGG AAGAAGAGGAGGCGCAGCGAGAAGAAGAGGGTCGAATGCCGTCATTCCGA GATATTTCTAGTCTCCTGTACGACTATGCGGTCCTCCGCGGACTGCGGCC GTCCCTCGAGGCCCTGACTTCCAGAACCTCGATTCTCTTGGCTTCGAAGC CATCCGCCGATCGCGTCAACCTTCGCGGTTTTTCTGCCGGCTGCGAACGA ACTTGGGATGGTGATGCCGCGCCTTCGGAGTCCACCTCCAAGTCGTCGGT GTTCGAGACGATGCATTTTTTCCTCGACAGGCTCCCCGTTTGGCTCCTCC GAGGGCTCGCGATTATCGTGCGACGGCTGCCGCGCTCGCGTCGAACGAAC TGTTACCGCACCGAGGGACTCAGCCGCCCACCGCCAGCTGCGTCTTGCAA TCGCCTTGCCGAAGGCGGGGAAGGCTTGGAGAGATTCTCGAACATGGCCG TGGCGGAGACTGACCAAGAAGCGAGGGAAAAATGCCTGGCGGGCGATGGA GAAGGCACGGTAATGATCGCCTCGGGATCTTCAGTTGCGGTGGAAGATGA AGTGATCGCGGACATGGATGCAGACGCAGGCGCAAATAACTCGGGTGGCG TAGACAGGCTCGTGGAGGCTAGGGGAAGAGCACTCCCAAGGATTTGTGAA CCCGGAACGCCGCAATCGACGAAGCGCTGCGGTCCGGGCGTTGATATCAT TGCTTTGGTGGAGCGTCTCGACCGGCTCACGGCATTGCCCTCTGTGTATG AGCCCTTCACCTGGCAGCGGTACTTCTTCGACTCCGCGCTGCGCGTACCG CGCGCGCTGACGCCGGAAGGCTACGCTCTTGAGGCCTCGATTGCTTCGGA GCTATTGATCCAGAACCTAGAGGGCGGCTTACGATGCGGGGACGCCAACA CCAAGGCTAGTCCGGAGCGCCGAGATGAGGTTCTCCAGGAACTGGCGCTG CAGATAAAGACCCACCGAGCGGGCGGCTTACGATGTGGAGTGAGCGACGA TCGTCTCTATCGAGAAGAGGAGGAGGATGCTTGTCCAGAGGGGATGGGGA CGGGGGGGGCTCTCATTGAAAAGGATGGAGGCGGAGAGGGTCGGTTTGGC TTCAGAGGGCGGCTTACGATGCGGGGACGCCAACACCAAGGCTAGTCCGG AGCGCCGAGATGAGGTTCTCCAGGAACTGGCGCTGCAGATAAAGACCCAC CGAGCGGGCGGCTTACGATGTGGAGTGAGCGACGATCGTCTCTATCGAGA AGAGGAGGAGGATGCTTGTCCAGAGGGGATGGGGACGGGGGGGGCTCTCA TTGAAAAGGATGGAGGCGGAGAGGGTCGGTTTGGCTTC back to top
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