mRNA_H-elongata_contig84133.16024.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: D8LER9_ECTSI (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER9_ECTSI) HSP 1 Score: 181 bits (458), Expect = 5.590e-53 Identity = 98/138 (71.01%), Postives = 110/138 (79.71%), Query Frame = 1
Query: 1 KDVVDDPFFDTEAESPAGARRTKEQTERDAQTADLGSDDSFPDA--GEVKESLFDQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSG-DSGGFLKLVTRADEPNRHAIVGVQII 405
+DVVDDPFF EAES +GA+RT EQ ++ QTA LGSDDS DA G ESLF++V APLTLWTIPEISSVGLTEEQ GM+KA +GGS+VTGYAYFKDIARGRLSG D+ GFLKLV RAD P RH +VGVQII
Sbjct: 261 EDVVDDPFFAAEAESASGAQRTSEQLQQYEQTAMLGSDDSMADAAGGAEGESLFERVAGAPLTLWTIPEISSVGLTEEQAFAEGMRKASQGGSMVTGYAYFKDIARGRLSGGDAAGFLKLVARADGPTRHVVVGVQII 398
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE) HSP 1 Score: 181 bits (458), Expect = 3.760e-51 Identity = 99/140 (70.71%), Postives = 112/140 (80.00%), Query Frame = 1
Query: 1 KDVVDDPFFDTEAESPAGARRTKEQTERDAQTADLGSDDSFPDA-GEVK-ESLFDQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSG-DSGGFLKLVTRADEPNRHAIVGVQIIGE 411
+DVVDDPFF EAES +GA+RT EQ ++ QTA LGSDDS DA G + ESLF +V APLTLWTIPEISS GLTEEQ + GM+KA +GGS+VTGYAYFKDIARGRLSG D+ GFLKLV RAD P RH +VGVQIIGE
Sbjct: 435 EDVVDDPFFAAEAESASGAQRTSEQLQQYEQTAMLGSDDSMADAAGRAEGESLFKRVAGAPLTLWTIPEISSAGLTEEQAVAEGMRKASQGGSMVTGYAYFKDIARGRLSGGDAAGFLKLVARADGPTRHVVVGVQIIGE 574
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A836CA28_9STRA (Soluble pyridine nucleotide transhydogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA28_9STRA) HSP 1 Score: 102 bits (254), Expect = 6.790e-23 Identity = 66/149 (44.30%), Postives = 85/149 (57.05%), Query Frame = 1
Query: 1 KDVVDDPFFDTEAESPAGARRTK--EQTERDAQTADLGSDDSFPDAGE---VKESLFDQVVAA--PLTLWTIPEISSVGLTEEQCLEGGMKKAIEGG-----SLVTGYAYFKDIARGRLSGDSGGFLKLVTRADEPNRHAIVGVQIIGE 411
+D +DDPFF + A +P R + E + PD GE +LF A PLTLWTIPEI+ VGL+EE E + + GG ++V GYAYFKD+ARGRLSGD GFLK++ RA+ P RH +VGV I+GE
Sbjct: 252 EDAIDDPFFASAAPAPPPPRTAEAPESXXXXXXXXXXAAAAEKPD-GEGDGTGRTLFGTAARAGTPLTLWTIPEIACVGLSEEAARELEVAGRLGGGGGGDATVVVGYAYFKDLARGRLSGDPEGFLKIIARAEAPARHVVVGVHIMGE 399
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: K8Z8R3_NANGC (Soluble pyridine nucleotide transhydrogenase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z8R3_NANGC) HSP 1 Score: 92.0 bits (227), Expect = 1.850e-20 Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 172 APLTLWTIPEISSVGLTEEQCLEGGMKKAI---EGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRAD----EPNRHAIVGVQIIGE 411
APLTLWT+PEI+S G++ E+ L G + A +GG +V GYA+FKD+ARGRLSGD GFLK++ RA+ + RH I+GV I+G+
Sbjct: 45 APLTLWTVPEIASSGMSTEEALARGERLAETEEQGGGIVFGYAFFKDLARGRLSGDLNGFLKIIARAEGGSGQKMRHTIIGVHIVGD 131
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A4D9CSA5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA5_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 5.180e-19 Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 172 APLTLWTIPEISSVGLTEEQCLEGGMKKAI---EGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRAD----EPNRHAIVGVQIIGE 411
APLTLWT+PEI+S G++ E+ L G + A +GG +V GYA+FKD+ARGRLSGD GFLK++ RA+ + RH I+GV I+G+
Sbjct: 520 APLTLWTVPEIASSGMSTEEALARGERLAETEEQGGGIVFGYAFFKDLARGRLSGDLNGFLKIIARAEGGSGQKMRHTIIGVHIVGD 606
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: H6WB84_VAULI (Soluble pyridine nucleotide transhydogenase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB84_VAULI) HSP 1 Score: 82.0 bits (201), Expect = 1.380e-15 Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 175 PLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRADEPNRHAIVGVQIIGE 411
PLTLWT+PE++ VGL+E G G V GYAYFKD+ARGR SG+ GGFLK++ D+ +H + GV ++GE
Sbjct: 320 PLTLWTVPEVAGVGLSE------GEIPYESKGKYVIGYAYFKDLARGRFSGEDGGFLKIIASVDKIGQHVVKGVHVMGE 392
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 5.070e-12 Identity = 40/81 (49.38%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 175 PLTLWTIPEISSVG--LTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRADEPNRHAIVGVQIIGE 411
PLTLWTIPEI+SVG L Q + G K G +V G +FKD ARGRLSG+ GF+K+ + N H I+G I GE
Sbjct: 455 PLTLWTIPEIASVGTGLDASQAPQRGAKV----GDIVCGRGFFKDCARGRLSGEVNGFVKVAAKITSSNTHEIIGCCIFGE 531
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A6U8N6N8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8N6N8_9EUGL) HSP 1 Score: 71.2 bits (173), Expect = 9.700e-12 Identity = 49/113 (43.36%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 88 AQTADLGSDDSFPDAGEVKESLFDQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSGGFLKLV---TRADEPNR---HAIVGVQIIG 408
A+ A+L S F +G S Q PLTLWTIPEI+SVG++ EQ G +GG+++ GYA F ++ARGRL+G G F+++V T A + + H IVGV IIG
Sbjct: 538 AEQAELQSSALFGTSGASSAS-GGQSADVPLTLWTIPEIASVGVSVEQLEAQGETGWEDGGNIIVGYARFDELARGRLAGGQG-FVQIVAMHTPAKDGQKAATHRIVGVHIIG 648
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 7.040e-10 Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 139 VKESLF-----DQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSG-GFLKLV 354
V E LF +++ +AP TLWT+PEIS+VGL+ EQ E GG +V G AY++D ARGRLSGD+ GFL+LV
Sbjct: 449 VAEQLFQKAFDEELSSAPTTLWTMPEISTVGLSPEQAEE-----MYPGGRVVQGTAYYRDSARGRLSGDADDGFLQLV 521
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Match: UPI0019F9065D (Si-specific NAD(P)(+) transhydrogenase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F9065D) HSP 1 Score: 64.3 bits (155), Expect = 2.360e-9 Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 157 DQVVAAPLTLWTIPEISSVGLTEEQCLEGGMKKAIEGGSLVTGYAYFKDIARGRLSGDSGGFLKLVTRADEPNRHAIVGVQIIGE 411
D V P ++TIPEIS VG TEE+ E G+ + G A+F+++ARG +SGD G LKL+ + N H ++GV IIGE
Sbjct: 341 DNVGLMPFGIYTIPEISMVGATEEELTEKGVPYEV-------GTAFFEEVARGLISGDLHGMLKLIFNS---NDHTLLGVHIIGE 415 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84133.16024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84133.16024.1 >prot_H-elongata_contig84133.16024.1 ID=prot_H-elongata_contig84133.16024.1|Name=mRNA_H-elongata_contig84133.16024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp KDVVDDPFFDTEAESPAGARRTKEQTERDAQTADLGSDDSFPDAGEVKESback to top mRNA from alignment at H-elongata_contig84133:186..1503- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84133.16024.1 ID=mRNA_H-elongata_contig84133.16024.1|Name=mRNA_H-elongata_contig84133.16024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1318bp|location=Sequence derived from alignment at H-elongata_contig84133:186..1503- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84133:186..1503- >mRNA_H-elongata_contig84133.16024.1 ID=mRNA_H-elongata_contig84133.16024.1|Name=mRNA_H-elongata_contig84133.16024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig84133:186..1503- (Himanthalia elongata Himel1 dioecious)back to top |