mRNA_H-elongata_contig84058.16015.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84058.16015.1
Unique NamemRNA_H-elongata_contig84058.16015.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84058.16015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84058contigH-elongata_contig84058:913..2660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue7.2e-07
Seed eggNOG ortholog2880.D8LRF5
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionMembrane-localised QAD domain protein
Ec32 orthologEc-03_004750.1
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size1357
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84058.16015.1prot_H-elongata_contig84058.16015.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84058 994..1918 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931245.2155545-UTR-H-elongata_contig84058:912..9931622931245.2155545-UTR-H-elongata_contig84058:912..993Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84058 913..993 +
1691679757.5122046-UTR-H-elongata_contig84058:912..9931691679757.5122046-UTR-H-elongata_contig84058:912..993Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84058 913..993 +
1622931245.2830594-UTR-H-elongata_contig84058:1918..26601622931245.2830594-UTR-H-elongata_contig84058:1918..2660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84058 1919..2660 +
1691679757.552462-UTR-H-elongata_contig84058:1918..26601691679757.552462-UTR-H-elongata_contig84058:1918..2660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84058 1919..2660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931245.234852-CDS-H-elongata_contig84058:993..11881622931245.234852-CDS-H-elongata_contig84058:993..1188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84058 994..1188 +
1691679757.529595-CDS-H-elongata_contig84058:993..11881691679757.529595-CDS-H-elongata_contig84058:993..1188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84058 994..1188 +
1622931245.2611673-CDS-H-elongata_contig84058:1579..19181622931245.2611673-CDS-H-elongata_contig84058:1579..1918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84058 1580..1918 +
1691679757.5410335-CDS-H-elongata_contig84058:1579..19181691679757.5410335-CDS-H-elongata_contig84058:1579..1918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84058 1580..1918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84058.16015.1

>prot_H-elongata_contig84058.16015.1 ID=prot_H-elongata_contig84058.16015.1|Name=mRNA_H-elongata_contig84058.16015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
MNDISVVKLDAGGSVLWERDLGANSRTAEAAAMANDGTIVIVGSQDANPI
ALKVDANGSVEWMWEEEKFGEENAFHAVATGPGGRALLAGASRPLAAPNA
WEEDFWTVLVNLSASPPPSPPTRSPSVISPDVWDSQPTYSSPILRKILVP
RWEVVGVIIGLAFLLELVILFNRWSRR*
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mRNA from alignment at H-elongata_contig84058:913..2660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84058.16015.1 ID=mRNA_H-elongata_contig84058.16015.1|Name=mRNA_H-elongata_contig84058.16015.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1748bp|location=Sequence derived from alignment at H-elongata_contig84058:913..2660+ (Himanthalia elongata Himel1 dioecious)
AAGGACGAGTCTTGGTTCCGGTGGGAGCACAGCGAAGTCATCGCCGTCCT
TGTGGCGGACAATGACTCCGCGGTGCTGATCATGAACGACATTTCGGTCG
TAAAGCTCGACGCCGGGGGTTCAGTGCTGTGGGAGCGCGACCTGGGCGCC
AACAGTCGAACGGCCGAGGCCGCGGCTATGGCTAACGACGGTACGATCGT
CATCGTAGGGAGCCAAGATGCCAATCCCATCGCCTTGAAGGTGGACGCAA
ATGGTAGCGTGGAGTGGATGTGGGAGGTGAGCGTGGTCCAGCGGGGTCCC
CCGAGGTAATGCAACGGAGACGACGACGCCGATGCAATTGGCGATACGGC
TCTCGGAATGCGCCGATGAACGGATTTCATTTGCGGTAGGACGAGCGCAT
GTTAAGTTATGAAAATGGGCTCCTTCTTTTGTGCATTTTTTGGACACGGC
ACGAAGTAGGGAAAATGTTGGCACTGCCTCCCCCCCCCCTGTTCTTTCGC
ATGCCTGTCGTCGGCAGAAACGTGATAAAAAGTGGGGACTCGGTCAAGCT
CATGCCATCTCCTATTTTCTTCAAGATTTTTTTTACTTTCCCCTCCTCCC
TCCCCCTTTATCTCTCTCTTCTCAACGGCAAACGCGTTGCATCGCGCGTT
TCGCTCCCCTAACGCAGGAAGAAAAGTTCGGGGAAGAAAACGCCTTCCAC
GCGGTCGCAACCGGCCCCGGAGGTCGAGCGTTGTTGGCGGGAGCCTCGCG
TCCCCTCGCGGCGCCCAACGCTTGGGAGGAAGACTTTTGGACCGTTTTGG
TGAATCTGAGCGCGTCTCCTCCCCCTTCCCCTCCCACACGTTCGCCCTCG
GTGATCTCTCCGGATGTGTGGGATTCGCAGCCGACGTACTCTTCCCCGAT
CCTCCGCAAAATACTCGTCCCGCGGTGGGAAGTCGTTGGGGTTATCATAG
GGTTGGCATTTTTGCTTGAGCTAGTTATCCTCTTCAACAGGTGGTCGAGA
CGGTAAAGGAAAAACTAAGGCTGAAGCGTCATGGCCGGCGGTCTACGCGG
TGCGCAGGCTGTCCCACAGGCCGTCGCCGTCGCCAACTTCGACGCGGGTG
TGCTCTATGGCTTCGTGTCCGGCTTGGGCAAAACGTCAAGAAACGCTACC
TTATGCTGCTCCTGGGCGTAAAACCGTTTCCCGCCGACTTCGAAATACCC
CGTTTTTCTTGTCACGAGGGAGGGCGTAAAGGTGGGCAGAACAAGCCGGC
GCAAAACAATAATAATAATAAGGCGGGTGGATGGGTCGAAAGCGGGCTGG
AACCTCGACGACCCCGTGGTACACAATTGTATTGCTTTGTGCGCCACACT
GGAGCATTGGAATATAGTGTCCAGCAGGAAGGTAGTGCTCGATTGTGCGT
CAGAATACCATCAATTAAAGAGTACTATCAATAGTAACGTACCAGGGGGT
GGGTGAAACTATTCTACTGCCTGCCGTATCTGCTATTGATAGGCAGACGC
TTTTTTCCCGCGCGCACCGTTGCTGTACTAAGATATTTATCAGGGCGAGA
GGGGAGGGGTCGATTGGACGGCAGAGATAGCGCCAGGCGGTGTGGTCCCT
CCGCGGCGCGTGATTGGGAAATCGGCTAAGCTGTGTGTGTTCGCGCGCTT
CCCCTGTTCATGTCCCTCGGACAGCAAGCGCGCTCTTGTGGTAGTGTCTC
TTGTAAATTAAAAATGGGTGGCGCCTCCGCCCTAGCACTGCGAAGACG
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Coding sequence (CDS) from alignment at H-elongata_contig84058:913..2660+

>mRNA_H-elongata_contig84058.16015.1 ID=mRNA_H-elongata_contig84058.16015.1|Name=mRNA_H-elongata_contig84058.16015.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig84058:913..2660+ (Himanthalia elongata Himel1 dioecious)
ATGAACGACATTTCGGTCGTAAAGCTCGACGCCGGGGGTTCAGTGCTGTG
GGAGCGCGACCTGGGCGCCAACAGTCGAACGGCCGAGGCCGCGGCTATGG
CTAACGACGGTACGATCGTCATCGTAGGGAGCCAAGATGCCAATCCCATC
GCCTTGAAGGTGGACGCAAATGGTAGCGTGGAGTGGATGTGGGAGATGAA
CGACATTTCGGTCGTAAAGCTCGACGCCGGGGGTTCAGTGCTGTGGGAGC
GCGACCTGGGCGCCAACAGTCGAACGGCCGAGGCCGCGGCTATGGCTAAC
GACGGTACGATCGTCATCGTAGGGAGCCAAGATGCCAATCCCATCGCCTT
GAAGGTGGACGCAAATGGTAGCGTGGAGTGGATGTGGGAGGAAGAAAAGT
TCGGGGAAGAAAACGCCTTCCACGCGGTCGCAACCGGCCCCGGAGGTCGA
GCGTTGTTGGCGGGAGCCTCGCGTCCCCTCGCGGCGCCCAACGCTTGGGA
GGAAGACTTTTGGACCGTTTTGGTGAATCTGAGCGCGTCTCCTCCCCCTT
CCCCTCCCACACGTTCGCCCTCGGTGATCTCTCCGGATGTGTGGGATTCG
CAGCCGACGTACTCTTCCCCGATCCTCCGCAAAATACTCGTCCCGCGGTG
GGAAGTCGTTGGGGTTATCATAGGGTTGGCATTTTTGCTTGAGCTAGTTA
TCCTCTTCAACAGGTGGTCGAGACGGTAAGAAGAAAAGTTCGGGGAAGAA
AACGCCTTCCACGCGGTCGCAACCGGCCCCGGAGGTCGAGCGTTGTTGGC
GGGAGCCTCGCGTCCCCTCGCGGCGCCCAACGCTTGGGAGGAAGACTTTT
GGACCGTTTTGGTGAATCTGAGCGCGTCTCCTCCCCCTTCCCCTCCCACA
CGTTCGCCCTCGGTGATCTCTCCGGATGTGTGGGATTCGCAGCCGACGTA
CTCTTCCCCGATCCTCCGCAAAATACTCGTCCCGCGGTGGGAAGTCGTTG
GGGTTATCATAGGGTTGGCATTTTTGCTTGAGCTAGTTATCCTCTTCAAC
AGGTGGTCGAGACGGTAA
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