mRNA_H-elongata_contig83068.15942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83068.15942.1
Unique NamemRNA_H-elongata_contig83068.15942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83068.15942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83068contigH-elongata_contig83068:129..1215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83068.15942.1prot_H-elongata_contig83068.15942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83068 148..1215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.4869485-UTR-H-elongata_contig83068:128..1471622931237.4869485-UTR-H-elongata_contig83068:128..147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83068 129..147 +
1691679754.474537-UTR-H-elongata_contig83068:128..1471691679754.474537-UTR-H-elongata_contig83068:128..147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83068 129..147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931237.508221-CDS-H-elongata_contig83068:147..2071622931237.508221-CDS-H-elongata_contig83068:147..207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83068 148..207 +
1691679754.4848332-CDS-H-elongata_contig83068:147..2071691679754.4848332-CDS-H-elongata_contig83068:147..207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83068 148..207 +
1622931237.5299106-CDS-H-elongata_contig83068:984..12151622931237.5299106-CDS-H-elongata_contig83068:984..1215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83068 985..1215 +
1691679754.4965167-CDS-H-elongata_contig83068:984..12151691679754.4965167-CDS-H-elongata_contig83068:984..1215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83068 985..1215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83068.15942.1

>prot_H-elongata_contig83068.15942.1 ID=prot_H-elongata_contig83068.15942.1|Name=mRNA_H-elongata_contig83068.15942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MSNEQAREVARTAADGILLQVEREAESKLSFSANTGALDDEGGDSSADPS
HRGGSAACGSLCSRHRDPKMLEEQEGQIEGEDKIQEGEEGLLDWGDG
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mRNA from alignment at H-elongata_contig83068:129..1215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83068.15942.1 ID=mRNA_H-elongata_contig83068.15942.1|Name=mRNA_H-elongata_contig83068.15942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1087bp|location=Sequence derived from alignment at H-elongata_contig83068:129..1215+ (Himanthalia elongata Himel1 dioecious)
GAACGGTCGAGTGCGGCGGATGAGCAACGAGCAAGCGAGAGAGGTGGCAA
GGACGGCGGCCGACGGTATTCTCCTACAGGTCAGCCATCCCCTCCTCAAG
GTCTCCTCCTCAAGGCTCTCCTCTAGGCTCGGTTCATCGTCTGCCGGAAG
ATCGTGGCGGTGCTCTTGTGGCGGTGCAGAGAAATCCACACCGCCTGAAG
TTGCTAGAGTCGATAAGATCTGGGACATCCTTTGTCTCTAGGACCGCGCT
CAGAGAGCTCTACCTCTGCCGGTCCGTGAAAAGGGTTGTGTCTCTTCGAA
GCGGTTAAATTGTAGCGATCGGAAACAAAAACAGGCCGTGGGCAGTGGGT
ATACCGAAAGGATGACAGTTTTTGCTGCCGCAACTGGAGCAAGCAACAAG
TTGGCACCTGGCTTTGTGTTTAACATCGATGCCCGCTGCTCCCTCTCCCC
GCCCCCCCCCCCCTCATGAATCCAATTCAGTATCTACGCTAATCCAATGC
CAGCGAGGCCATAATGAGATTGATTGATTGATTGATTGATTGATGATTGA
TGATTGATTGGGCGAGGTTCCTGGGATGATAGCGAATCGCGCATCAGAAG
AACTGTAAATATATTTACTTTCGGGAACGTTGTAAACCTTAACCCTCCGA
TCAGGCAAAGAGCCATGCGGAAAGGGCGATCTTTCTCTAAAATGATAAAA
CCACCTTACGCCTTACGACCCACACGACCGACCGAACGTGGCCACGTGCT
ACTGTAAGGATGTGGTTGGTCTAGTGCTTGGGCGAGTGTTGCACCGACTG
GGAAATTGGGCCACGGTGTGTTAATCTAACCCGAGCCTCTTCGATGCGCT
AACCAGGTGGAACGAGAAGCCGAGAGCAAGTTATCGTTTTCCGCGAATAC
TGGCGCGCTGGACGATGAGGGCGGTGACTCCTCGGCCGACCCGAGCCACC
GTGGCGGCTCTGCAGCCTGCGGGAGCTTGTGTAGTCGACACCGAGACCCG
AAAATGTTGGAGGAGCAGGAGGGTCAGATAGAGGGAGAAGATAAAATACA
GGAAGGCGAGGAGGGATTATTGGACTGGGGAGACGGG
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Coding sequence (CDS) from alignment at H-elongata_contig83068:129..1215+

>mRNA_H-elongata_contig83068.15942.1 ID=mRNA_H-elongata_contig83068.15942.1|Name=mRNA_H-elongata_contig83068.15942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig83068:129..1215+ (Himanthalia elongata Himel1 dioecious)
ATGAGCAACGAGCAAGCGAGAGAGGTGGCAAGGACGGCGGCCGACGGTAT
TCTCCTACAGATGAGCAACGAGCAAGCGAGAGAGGTGGCAAGGACGGCGG
CCGACGGTATTCTCCTACAGGTGGAACGAGAAGCCGAGAGCAAGTTATCG
TTTTCCGCGAATACTGGCGCGCTGGACGATGAGGGCGGTGACTCCTCGGC
CGACCCGAGCCACCGTGGCGGCTCTGCAGCCTGCGGGAGCTTGTGTAGTC
GACACCGAGACCCGAAAATGTTGGAGGAGCAGGAGGGTCAGATAGAGGGA
GAAGATAAAATACAGGAAGGCGAGGAGGGATTATTGGACTGGGGAGACGG
GGTGGAACGAGAAGCCGAGAGCAAGTTATCGTTTTCCGCGAATACTGGCG
CGCTGGACGATGAGGGCGGTGACTCCTCGGCCGACCCGAGCCACCGTGGC
GGCTCTGCAGCCTGCGGGAGCTTGTGTAGTCGACACCGAGACCCGAAAAT
GTTGGAGGAGCAGGAGGGTCAGATAGAGGGAGAAGATAAAATACAGGAAG
GCGAGGAGGGATTATTGGACTGGGGAGACGGG
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