mRNA_H-elongata_contig82512.15905.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82512.15905.1
Unique NamemRNA_H-elongata_contig82512.15905.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82512.15905.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.350e-10
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 KETDKLEPMLMAADWGVLEMILPILQPFLHTQTLLEGRKYVTGSLVVPFIHDLRTNLE 174
            + TD + P+L   DW VL +I PIL+PF+  Q  LEG KYVTGS+ VP I +LR  LE
Sbjct:  256 ESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLE 313
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BLAST of mRNA_H-elongata_contig82512.15905.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.460e-7
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   10 DKLEPMLMAADWGVLEMILPILQPFLHTQTLLEGRKYVTGSLVVPFIHDLRTNLE 174
            D++ P+L   DW VL +I PIL+PF+  Q  LEG +YVTGS+ +  + +LR  LE
Sbjct:  223 DEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLE 277
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BLAST of mRNA_H-elongata_contig82512.15905.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.160e-6
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 KETDKLEPMLMAADWGVLEMILPILQPFLHTQTLLEGRKYVTGSLVVPFIHDLRTNLE 174
            +E D + P+L   DW VL+++ P+L PF+  Q  LE  K VT SLV  +I DLR  L+
Sbjct:  157 REIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELD 214
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BLAST of mRNA_H-elongata_contig82512.15905.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 7.690e-6
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   10 DKLEPMLMAADWGVLEMILPILQPFLHTQTLLEGRKYVTGSLVVPFIHDLRTNLE 174
            D + P+L   DW VL+++ P+ +PF+ +Q   E  K VT SLV+P+I DLR  L+
Sbjct:  232 DSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELD 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82512.15905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE1.350e-1053.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI2.460e-747.27Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KVI1_9PHAE1.160e-644.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE7.690e-643.64Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82512contigH-elongata_contig82512:2314..2487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931232.287846-UTR-H-elongata_contig82512:2313..23371622931232.287846-UTR-H-elongata_contig82512:2313..2337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82512 2314..2337 +
1691679752.3764093-UTR-H-elongata_contig82512:2313..23371691679752.3764093-UTR-H-elongata_contig82512:2313..2337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82512 2314..2337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931232.308593-CDS-H-elongata_contig82512:2337..24871622931232.308593-CDS-H-elongata_contig82512:2337..2487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82512 2338..2487 +
1691679752.3892674-CDS-H-elongata_contig82512:2337..24871691679752.3892674-CDS-H-elongata_contig82512:2337..2487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82512 2338..2487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82512.15905.1prot_H-elongata_contig82512.15905.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82512 2338..2487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82512.15905.1

>prot_H-elongata_contig82512.15905.1 ID=prot_H-elongata_contig82512.15905.1|Name=mRNA_H-elongata_contig82512.15905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MLMAADWGVLEMILPILQPFLHTQTLLEGRKYVTGSLVVPFIHDLRTNLE
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mRNA from alignment at H-elongata_contig82512:2314..2487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82512.15905.1 ID=mRNA_H-elongata_contig82512.15905.1|Name=mRNA_H-elongata_contig82512.15905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig82512:2314..2487+ (Himanthalia elongata Himel1 dioecious)
AAAGAGACTGACAAGCTGGAGCCGATGCTGATGGCGGCAGACTGGGGTGT
CCTTGAGATGATTCTTCCGATCCTGCAGCCGTTCTTGCACACCCAGACTC
TGCTTGAGGGCCGCAAGTACGTGACGGGAAGCTTGGTGGTACCTTTCATC
CACGACCTCCGCACCAACCTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig82512:2314..2487+

>mRNA_H-elongata_contig82512.15905.1 ID=mRNA_H-elongata_contig82512.15905.1|Name=mRNA_H-elongata_contig82512.15905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig82512:2314..2487+ (Himanthalia elongata Himel1 dioecious)
ATGCTGATGGCGGCAGACTGGGGTGTCCTTGAGATGATTCTTCCGATCCT
GCAGCCGTTCTTGCACACCCAGACTCTGCTTGAGGGCCGCAAGTACGTGA
CGGGAAGCTTGGTGGTACCTTTCATCCACGACCTCCGCACCAACCTCGAG
ATGCTGATGGCGGCAGACTGGGGTGTCCTTGAGATGATTCTTCCGATCCT
GCAGCCGTTCTTGCACACCCAGACTCTGCTTGAGGGCCGCAAGTACGTGA
CGGGAAGCTTGGTGGTACCTTTCATCCACGACCTCCGCACCAACCTCGAG
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