mRNA_H-elongata_contig82287.15885.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82287.15885.1
Unique NamemRNA_H-elongata_contig82287.15885.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: A0A6H5L059_9PHAE (Protein pelota homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L059_9PHAE)

HSP 1 Score: 445 bits (1144), Expect = 1.140e-154
Identity = 222/250 (88.80%), Postives = 241/250 (96.40%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGSSDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYGYN 750
            VVNESSTGSTTSKRVRL+LTI VERVDFDSDSCLLRLSGRNS+ENPHVKIGAYHTLDLELNQVFS+EKD+WD+IHLERIETSSDP KKAEVAAVVMTGGLAHVCLVTSHMTVTRARIE+NIPRKRAGSSDH KA+ RFYEAVYQAIVRHVNF+ IKC+LLGSPGFVKDDFF FLNL AV+REERVLIENKSKFVLVHA+SGHK AVE+ILSQP+VQ+RL+DTKA+EEIRALA+FF MLKKDP+RA+YGYN
Sbjct:   45 VVNESSTGSTTSKRVRLSLTIAVERVDFDSDSCLLRLSGRNSEENPHVKIGAYHTLDLELNQVFSIEKDVWDVIHLERIETSSDPAKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEMNIPRKRAGSSDHQKAISRFYEAVYQAIVRHVNFQQIKCLLLGSPGFVKDDFFEFLNLEAVRREERVLIENKSKFVLVHASSGHKHAVEEILSQPAVQTRLADTKASEEIRALATFFDMLKKDPDRAYYGYN 294
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: A0A835Z3B0_9STRA (Protein pelota homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B0_9STRA)

HSP 1 Score: 377 bits (968), Expect = 6.150e-128
Identity = 185/249 (74.30%), Postives = 221/249 (88.76%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGSSDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYGY 747
            VV+ESSTGST+SKRVRLNLTIGVER DFDS+ C+LRLSG+N +EN HVKIGAYHTLDLELNQ FSVEK  WD +HL+RI+ +SDP + A+VAAVVMT GLAHVCLVT+HMTVTRAR+E+NIPRKRAGSSDH+KA+ RFYEAVY+A++  ++F +++CVLLGSPGFVKDDFFA+L   AV+RE+R LIENK+KFVL HATSGHK AVE++LSQP+V +RL+DTKAA E+RALA FF MLK DP+RA YGY
Sbjct:   47 VVSESSTGSTSSKRVRLNLTIGVERTDFDSEGCVLRLSGKNVEENAHVKIGAYHTLDLELNQTFSVEKAHWDAMHLDRIDAASDPVRCADVAAVVMTAGLAHVCLVTAHMTVTRARVEMNIPRKRAGSSDHAKAIRRFYEAVYRAVLDKIDFAVVRCVLLGSPGFVKDDFFAYLCEEAVRREDRPLIENKAKFVLCHATSGHKHAVEELLSQPAVLARLADTKAAAEVRALAEFFAMLKADPDRAFYGY 295
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: W7TT01_9STRA (Protein pelota homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT01_9STRA)

HSP 1 Score: 315 bits (807), Expect = 5.250e-103
Identity = 146/250 (58.40%), Postives = 199/250 (79.60%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGSSDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYGYN 750
            VV ES+TGSTTS ++RLNLTI V+R+ FD D+C+LRLSG N +E+ HVK+GAYHTLDLEL + F+++K  WD + L+R++ + DP K+AEVAA+VM  GLA++CL+T  MT+ R RI++ IP+KRAG+  H KA+ +FY AVY+A+ RH+NF L+K VLL SPGFV  DFFAFLN  A  +E++ L++NKSKFVL H++SGHK A+E++L+QP +Q+RL+DTKA  E++AL  FF ML   P+RAHYG+N
Sbjct:   48 VVKESATGSTTSNKIRLNLTIQVQRMQFDPDTCVLRLSGPNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDDACDPVKQAEVAAIVMQSGLANICLLTGSMTLVRQRIDMPIPKKRAGNVAHDKAIQKFYRAVYEAVTRHINFSLVKAVLLASPGFVNSDFFAFLNSEAQLKEDKSLLQNKSKFVLCHSSSGHKHALEEVLTQPGIQARLADTKAVGEVQALGDFFAMLSAQPDRAHYGFN 297
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: A0A1V9ZXG7_9STRA (Protein pelota homolog n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZXG7_9STRA)

HSP 1 Score: 303 bits (775), Expect = 9.360e-99
Identity = 138/250 (55.20%), Postives = 197/250 (78.80%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGSSDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYGYN 750
            V+ E +TGSTTS+RVR+ L++ +E +DFD   CLLR+ G+N +ENPHV++GAYHT+DLE+N+ F++ K  WD++ LERI+T+ +  K+AE AAVVM  GLAH+CL+  HMTV RA++E +IPRKR G++ H+K M +FY+++ QAI RHV+F L+KCVLL SPGFVKDDF  F+   A++ +++VL+ENKSKF+L HA+SGHK A++++L+ P V  +L DTKAA +++ L SFF ML  D ++A+YGYN
Sbjct:   48 VIKEGATGSTTSQRVRMTLSLQMEHIDFDPAKCLLRIRGKNVEENPHVRMGAYHTIDLEMNKDFTLSKQCWDLMTLERIDTACNVAKQAEAAAVVMQAGLAHLCLIKGHMTVIRAKLEASIPRKRTGNTAHAKGMEKFYDSIVQAIKRHVDFTLVKCVLLASPGFVKDDFHKFMMEYAIRTDDKVLLENKSKFILCHASSGHKHALDEVLTDPKVLVQLEDTKAAGDVKCLESFFEMLHTDQDKAYYGYN 297
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: UPI001455390D (protein pelota homolog n=2 Tax=Asteroidea TaxID=7588 RepID=UPI001455390D)

HSP 1 Score: 301 bits (772), Expect = 1.470e-98
Identity = 151/251 (60.16%), Postives = 198/251 (78.88%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGS-SDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYGYN 750
            V  ESSTGS++S RVR  LTI VE VDFD  +C+LR+ GRN QEN +VK+GAYHTLDLELN+ F++ K LWD+I LERIE + D  + A+VAAVVM  GLA +CLVT  MTV RA++E NIPRKR GS S H K+++RFYEAV QAI+RH+NF+++KCVL+ SPGFVKD F  ++   A++ E +VL+ENK KF+ VH++SGHK A++++LS P+V +RLSDTKAA E++AL SF+ ML+ +P+RA YG N
Sbjct:   47 VTTESSTGSSSSSRVRTMLTISVEDVDFDVLACVLRVKGRNIQENQYVKMGAYHTLDLELNRKFTLAKQLWDVIDLERIEMACDIAQSADVAAVVMQEGLALICLVTPSMTVVRAKVEHNIPRKRKGSCSQHDKSLLRFYEAVMQAILRHINFDVVKCVLVASPGFVKDQFCEYMFQEAIKLETKVLLENKPKFLQVHSSSGHKHALKEVLSNPAVSARLSDTKAAGEVKALDSFYQMLQNEPDRAFYGAN 297
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: A0A6P7G8T3_DIAVI (Protein pelota homolog n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7G8T3_DIAVI)

HSP 1 Score: 300 bits (767), Expect = 7.200e-98
Identity = 140/249 (56.22%), Postives = 197/249 (79.12%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGS-SDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYG 744
            V +ESSTGS+TS RVR  LTI VE +DFD+ +C+LRL GRN +EN +VK+GAYHTLDLELN+ FS+ K  WD + LERI+ + DPTK A+VAAV+M  GLAHVCL+TS MT+ RA+I++NIPRKR G    H K + +FY+ V QAI+RH+NF+++KC+L+ SPGFVKD F+ ++  TAV+ + ++L+ENKSKF+L+H++SG K ++++IL  PSV +++SDTKAA E++ L +F+ ML+ +P +A YG
Sbjct:   47 VQSESSTGSSTSSRVRTTLTISVENIDFDTQACMLRLKGRNIEENQYVKMGAYHTLDLELNRKFSLRKPEWDSVSLERIDMACDPTKSADVAAVIMQEGLAHVCLITSSMTLVRAKIDVNIPRKRKGFVQQHEKGLAKFYDTVMQAILRHINFDIVKCILVASPGFVKDQFYEYMFQTAVKTDNKILLENKSKFMLIHSSSGFKHSLQEILQDPSVINKISDTKAAGEVKILENFYTMLQCEPAKAFYG 295
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: A0A6P7WF12_IXOSC (Protein pelota homolog n=15 Tax=Ixodidae TaxID=6939 RepID=A0A6P7WF12_IXOSC)

HSP 1 Score: 300 bits (767), Expect = 7.910e-98
Identity = 147/249 (59.04%), Postives = 194/249 (77.91%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGS-SDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYG 744
            V  ES+TGST S RVR  L I +E +DFD+ +C+LR+ GRN  EN +VK+GAYHTLDLE+N+ F++ K +WD +HLER++ + DPT+ A+VAAVVM  GLAHVCLVTS MT+ RA+I+I+IPRKR GS S H K + RFYEAV QAI+RHVNF++IKCVL+ SPGFVKD F+ ++   AV+ + +VL+ENK KFVL HA+SG K ++ +IL  P VQS+LSDTKAA E++AL  F+ +L+ +P RA YG
Sbjct:   47 VTTESATGSTGSNRVRTTLVIRIETIDFDTQACMLRVKGRNIVENQYVKMGAYHTLDLEMNRKFTLAKRMWDSVHLERLDLACDPTQHADVAAVVMQEGLAHVCLVTSAMTLVRAKIDISIPRKRKGSCSQHDKGLQRFYEAVMQAILRHVNFDVIKCVLIASPGFVKDQFYEYVFQAAVKLDLKVLLENKGKFVLAHASSGFKHSLREILQDPGVQSKLSDTKAAGEVKALDQFYQVLQNEPSRAFYG 295
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: A0A8B7YPC3_ACAPL (Protein pelota homolog n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YPC3_ACAPL)

HSP 1 Score: 300 bits (767), Expect = 8.160e-98
Identity = 147/249 (59.04%), Postives = 198/249 (79.52%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGS-SDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYG 744
            V  E++TGS++S RVR  LT+ VE VDFD  +C+LR+ GRN QEN +VK+GAYHTLDLELN+ F++ K LWD + LERIET+ D  + A+VAAVVM  GLA +CLVT  MT+ RA+IE NIPRKR GS S H KA++RFY+A+ QAI+RHVNF+++KCVL+ SPGFVKD F  F+   A++ E +VL+ENK KF+LVH++SGHK A++++LS P+V +RL+DTKAA E++AL +F+ ML+ +P+RA YG
Sbjct:   47 VTTETATGSSSSNRVRTVLTVSVEDVDFDVQACVLRVKGRNIQENQYVKMGAYHTLDLELNRKFTLAKQLWDAVDLERIETACDAAQMADVAAVVMQEGLALICLVTPSMTLVRAKIEHNIPRKRKGSCSQHDKALLRFYDALMQAILRHVNFDVVKCVLVASPGFVKDQFCEFMFQEAIKLENKVLLENKPKFLLVHSSSGHKHALKEVLSNPAVTARLADTKAAGEVKALDAFYNMLQNEPDRAFYG 295
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: A0A2D4C1K8_PYTIN (Protein pelota homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1K8_PYTIN)

HSP 1 Score: 300 bits (769), Expect = 8.550e-98
Identity = 136/249 (54.62%), Postives = 200/249 (80.32%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGSSDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYGY 747
            VV E  TGST+S+RVRL L I VE+V+FD   C+LR+ G+NS EN HV++GAYHTLDLE+N+ F++ K  WD++ +ERIET+ D +K+AE+AAVVM  GLAH+CL+  HMTV +A+IE ++P+KR GS+ H+K + +FYE + ++I +H++F+L+KCVLL SPGFVKDDF+ ++   A++ ++++L ENKSKFVL HA+SGHK A++++L+ P++QS+++DTKA E+++AL  FF ML  D +RA+YGY
Sbjct:   48 VVKEGVTGSTSSQRVRLTLQIEVEQVNFDPGQCVLRIKGKNSLENQHVRMGAYHTLDLEMNRDFTLSKQCWDVMSIERIETACDISKRAELAAVVMQTGLAHLCLIKGHMTVIKAKIETSVPKKRTGSTAHAKGLEKFYENIVRSIKQHIDFKLVKCVLLASPGFVKDDFYKYMTELAIRTDDKLLAENKSKFVLCHASSGHKHALDEVLNDPAIQSQVADTKAVEDVKALEMFFNMLHVDQDRAYYGY 296
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BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Match: A0A653CRU2_CALMS (Protein pelota homolog n=2 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653CRU2_CALMS)

HSP 1 Score: 299 bits (765), Expect = 1.850e-97
Identity = 142/249 (57.03%), Postives = 198/249 (79.52%), Query Frame = 1 
Query:    1 VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKIGAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGLAHVCLVTSHMTVTRARIEINIPRKRAGS-SDHSKAMVRFYEAVYQAIVRHVNFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATSGHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYG 744
            V  ESSTGS+TS RVR  LTI VE +DFD+ +C+LRL GRN +EN +VK+GAYHTLDLELN+ F + K  WD + LERIE +SDPTK A+VAAVVM  GLA+VCL+TS MT+ RA+I++ IPRKR G    H KA+++FY+ V QAI+RHVNF+++KCVL+ SPGFV+D F+ ++  TAV+ + ++L+ENKSKF+LVH++SG K +++++L  PSV +++SDTKAA E++A+ +F+ ML+ +P +A YG
Sbjct:   47 VQTESSTGSSTSNRVRTTLTISVENIDFDTQACMLRLKGRNIEENQYVKMGAYHTLDLELNRKFILRKQEWDSVSLERIEQASDPTKSADVAAVVMQEGLAYVCLITSSMTLVRAKIDVAIPRKRKGFVQQHEKALLKFYDQVMQAILRHVNFDIVKCVLIASPGFVRDQFYEYMFQTAVKTDNKLLLENKSKFMLVHSSSGFKHSLKEVLQDPSVMNKISDTKAASEVKAIETFYTMLQCEPAKAFYG 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82287.15885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L059_9PHAE1.140e-15488.80Protein pelota homolog n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835Z3B0_9STRA6.150e-12874.30Protein pelota homolog n=1 Tax=Tribonema minus Tax... [more]
W7TT01_9STRA5.250e-10358.40Protein pelota homolog n=2 Tax=Monodopsidaceae Tax... [more]
A0A1V9ZXG7_9STRA9.360e-9955.20Protein pelota homolog n=4 Tax=Saprolegniaceae Tax... [more]
UPI001455390D1.470e-9860.16protein pelota homolog n=2 Tax=Asteroidea TaxID=75... [more]
A0A6P7G8T3_DIAVI7.200e-9856.22Protein pelota homolog n=1 Tax=Diabrotica virgifer... [more]
A0A6P7WF12_IXOSC7.910e-9859.04Protein pelota homolog n=15 Tax=Ixodidae TaxID=693... [more]
A0A8B7YPC3_ACAPL8.160e-9859.04Protein pelota homolog n=1 Tax=Acanthaster planci ... [more]
A0A2D4C1K8_PYTIN8.550e-9854.62Protein pelota homolog n=1 Tax=Pythium insidiosum ... [more]
A0A653CRU2_CALMS1.850e-9757.03Protein pelota homolog n=2 Tax=Callosobruchus macu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82287contigH-elongata_contig82287:648..2731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score449.5
Seed ortholog evalue1e-123
Seed eggNOG ortholog2880.D7G6W7
Preferred namePELO
KEGG koko:K01669,ko:K06480,ko:K06965
KEGG Pathwayko03015,ko04151,ko04510,ko04512,ko04640,ko04810,ko05165,ko05410,ko05412,ko05414,map03015,map04151,map04510,map04512,map04640,map04810,map05165,map05410,map05412,map05414
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000956,GO:0001654,GO:0001745,GO:0002181,GO:0002184,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006986,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007127,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007423,GO:0007492,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0008283,GO:0008315,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0017145,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019827,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030397,GO:0030510,GO:0030513,GO:0030718,GO:0030855,GO:0030968,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034620,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0035966,GO:0035967,GO:0040029,GO:0042078,GO:0042221,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044464,GO:0044703,GO:0044770,GO:0044771,GO:0044839,GO:0044877,GO:0045727,GO:0045786,GO:0046483,GO:0046700,GO:0048132,GO:0048137,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048609,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051078,GO:0051081,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051276,GO:0051301,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060231,GO:0060255,GO:0060429,GO:0061024,GO:0061982,GO:0065007,GO:0070316,GO:0070317,GO:0070481,GO:0070651,GO:0070887,GO:0070966,GO:0071310,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090092,GO:0090100,GO:0090287,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090596,GO:0097159,GO:0098722,GO:0098727,GO:0098728,GO:0140013,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903008,GO:1903046,GO:1903506,GO:1990533,GO:2000112,GO:2001141
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, no-go decay
EggNOG OGsCOG1537@1,KOG2869@2759
EC4.1.99.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog description50S ribosomal protein L30e-like
Ec32 orthologEc-01_011970.1
Exons5
Model size750
Cds size750
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82287.15885.1prot_H-elongata_contig82287.15885.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82287 648..2731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.6776965-CDS-H-elongata_contig82287:647..7941622931229.6776965-CDS-H-elongata_contig82287:647..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 648..794 +
1691679751.2200212-CDS-H-elongata_contig82287:647..7941691679751.2200212-CDS-H-elongata_contig82287:647..794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 648..794 +
1622931229.6901088-CDS-H-elongata_contig82287:1130..12471622931229.6901088-CDS-H-elongata_contig82287:1130..1247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 1131..1247 +
1691679751.2329967-CDS-H-elongata_contig82287:1130..12471691679751.2329967-CDS-H-elongata_contig82287:1130..1247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 1131..1247 +
1622931229.7052128-CDS-H-elongata_contig82287:1645..18131622931229.7052128-CDS-H-elongata_contig82287:1645..1813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 1646..1813 +
1691679751.2426202-CDS-H-elongata_contig82287:1645..18131691679751.2426202-CDS-H-elongata_contig82287:1645..1813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 1646..1813 +
1622931229.7244313-CDS-H-elongata_contig82287:2122..22421622931229.7244313-CDS-H-elongata_contig82287:2122..2242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 2123..2242 +
1691679751.2529483-CDS-H-elongata_contig82287:2122..22421691679751.2529483-CDS-H-elongata_contig82287:2122..2242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 2123..2242 +
1622931229.7580094-CDS-H-elongata_contig82287:2533..27311622931229.7580094-CDS-H-elongata_contig82287:2533..2731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 2534..2731 +
1691679751.270357-CDS-H-elongata_contig82287:2533..27311691679751.270357-CDS-H-elongata_contig82287:2533..2731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82287 2534..2731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82287.15885.1

>prot_H-elongata_contig82287.15885.1 ID=prot_H-elongata_contig82287.15885.1|Name=mRNA_H-elongata_contig82287.15885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=250bp
VVNESSTGSTTSKRVRLNLTIGVERVDFDSDSCLLRLSGRNSQENPHVKI
GAYHTLDLELNQVFSVEKDLWDIIHLERIETSSDPTKKAEVAAVVMTGGL
AHVCLVTSHMTVTRARIEINIPRKRAGSSDHSKAMVRFYEAVYQAIVRHV
NFELIKCVLLGSPGFVKDDFFAFLNLTAVQREERVLIENKSKFVLVHATS
GHKRAVEDILSQPSVQSRLSDTKAAEEIRALASFFGMLKKDPERAHYGYN
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mRNA from alignment at H-elongata_contig82287:648..2731+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82287.15885.1 ID=mRNA_H-elongata_contig82287.15885.1|Name=mRNA_H-elongata_contig82287.15885.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2084bp|location=Sequence derived from alignment at H-elongata_contig82287:648..2731+ (Himanthalia elongata Himel1 dioecious)
GTCGTAAACGAGAGCTCAACGGGGTCAACGACGAGCAAGCGAGTCCGACT
GAACCTGACCATCGGGGTGGAAAGGGTAGACTTCGACTCTGATTCGTGTC
TGCTGCGCCTCTCCGGGAGAAACTCGCAAGAGAATCCACACGTCAAGGTA
CACCCTGCTATTATTGTTGCTCAAGGGTGAACTTGCATTACTGAGTTGGT
ACATTAGTTTCATGGGTTCTCGGAAATAATTCACGCCGTTTTCATGCATA
TAGCGCTACTCGGCATGCGAGGGATGACTAGGGATGGCGGCTGGCGCATC
CATTAGTAAATCTTCCGTTTTCTCAACCACAGTGCTATGGCCTCTTCTGG
CTTCCTCTGATCTTGTCCCGGATATAGATGTTCAGGAATAGCTTATAGCG
TAGTAATAGATAAAAACAGAGCATTGGCGGACTTGTTTCTCCGTTTATTT
CCTTTTCCCTCTACCCTTGACCGTTATGAACAGATCGGGGCGTACCACAC
GCTGGATCTAGAACTGAACCAAGTTTTCTCCGTCGAGAAGGACTTATGGG
ACATCATTCACCTCGAGCGGATTGAAACATCAAGTGACCCCACTAAGAAG
GTTGAGATCGATCGTACTTCATGCCACCACAGTTTCTATTAGTAGGGAGA
ATCATCAACGTTTCGCGCCATTTCCTCCCCTAGTCTTTATATTTCGACGC
AGGATCCCTTGTTACTGCCGTAGGTTCTCAAGCTGTTTCGAGACTCCGAT
CCCCGTAGCAAGCATATTATCTATGTTCGCCCCTGTCGAAGAAAACGCCA
ACGAAGGAGAAAAGCTACAGTAGACGGAACCGGAGATCTTCTTAACGGCA
GCATCCCCCGCAGTCGATTTGAGCCCGGGGAGCTTCGACTGAGACGCGGG
TCTCCAAACCATGAAGCCGCTAGCTCCCCGACGGACGACAGAGGTGGCCT
TATATATTTTTCGTTCAATATTTGTGCCCGTTGGAATGTTGATGACAGGC
GGAGGTCGCGGCGGTGGTGATGACAGGTGGCCTCGCCCACGTGTGTCTGG
TGACGTCACACATGACCGTCACGAGGGCGCGTATCGAAATCAACATTCCG
CGAAAGAGGGCAGGAAGCTCCGACCACAGCAAGGCCATGGTCCGATTCTA
CGAAGCCGTTTATCAGGTAAAATACAACTATTGCGATTCACAAGGCCTCT
GTCGTAGGTTCCTGTAGGAGGAAGCAACTACCGAGGTCTAGATGGATAAA
AGAGCAATATTAGGAGGAACGGGGCGATTTGAAGTCTTCACAGCGCTAGG
TTCTTGGCGAGTGAAGTGTTCGAGAGCTCGCCGTCTCAAACCGGGGGGAA
ACTGTCCTTTCTGTGTTATCAGTTATCAGTCAAAAGGGTTCGTGGTGTCA
CGCCTATACAGGGAATTATGACCAAAGAAGCAAGATGTAGCGTGACCACG
GGTTCAATGCATCTCGACCAAACAGGCAATCGTGCGGCACGTGAACTTCG
AGCTCATCAAGTGTGTGCTGCTAGGTAGTCCCGGGTTTGTGAAGGACGAC
TTCTTCGCGTTTTTGAACCTAACGGCGGTCCAAAGGGAGGAGAGGGTGAG
AACTTAGATCGATTCCCTGTCCAACATGTTAGCGGGTGGCGCAATGCCTT
GACGACCTTCGCCTCCGAAAATTGTTACATCGACAATGATACTGTATCGT
TCGCAAGATTGGTACTGTATCGCGTAATGACTGTAACATGTTGCATGTCG
AGCCAGGCGCCGCTAGTAGGCGTTTCAGAATAGTAATGTTGTGGTTACAA
AAGCGCTCCTGAGACGGTACTGCCCCTGGCTCCCCCTCGAAACACGCCCT
GGGACGACGGAATGTCCCGTACTCGTTCCTTTTCAGGTCCTGATCGAGAA
TAAGTCGAAGTTTGTCCTGGTTCACGCTACCTCGGGGCACAAGCGTGCCG
TGGAGGACATTTTGTCTCAACCCTCGGTGCAGTCGAGGCTCTCGGACACG
AAAGCAGCGGAGGAAATACGAGCGCTTGCCAGTTTTTTCGGCATGCTCAA
AAAGGACCCAGAGAGGGCTCACTACGGGTACAAC
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Coding sequence (CDS) from alignment at H-elongata_contig82287:648..2731+

>mRNA_H-elongata_contig82287.15885.1 ID=mRNA_H-elongata_contig82287.15885.1|Name=mRNA_H-elongata_contig82287.15885.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1500bp|location=Sequence derived from alignment at H-elongata_contig82287:648..2731+ (Himanthalia elongata Himel1 dioecious)
GTCGTAAACGAGAGCTCAACGGGGTCAACGACGAGCAAGCGAGTCCGACT
GAACCTGACCATCGGGGTGGAAAGGGTAGACTTCGACTCTGATTCGTGTC
TGCTGCGCCTCTCCGGGAGAAACTCGCAAGAGAATCCACACGTCAAGGTC
GTAAACGAGAGCTCAACGGGGTCAACGACGAGCAAGCGAGTCCGACTGAA
CCTGACCATCGGGGTGGAAAGGGTAGACTTCGACTCTGATTCGTGTCTGC
TGCGCCTCTCCGGGAGAAACTCGCAAGAGAATCCACACGTCAAGATCGGG
GCGTACCACACGCTGGATCTAGAACTGAACCAAGTTTTCTCCGTCGAGAA
GGACTTATGGGACATCATTCACCTCGAGCGGATTGAAACATCAAGTGACC
CCACTAAGAAGATCGGGGCGTACCACACGCTGGATCTAGAACTGAACCAA
GTTTTCTCCGTCGAGAAGGACTTATGGGACATCATTCACCTCGAGCGGAT
TGAAACATCAAGTGACCCCACTAAGAAGGCGGAGGTCGCGGCGGTGGTGA
TGACAGGTGGCCTCGCCCACGTGTGTCTGGTGACGTCACACATGACCGTC
ACGAGGGCGCGTATCGAAATCAACATTCCGCGAAAGAGGGCAGGAAGCTC
CGACCACAGCAAGGCCATGGTCCGATTCTACGAAGCCGTTTATCAGGCGG
AGGTCGCGGCGGTGGTGATGACAGGTGGCCTCGCCCACGTGTGTCTGGTG
ACGTCACACATGACCGTCACGAGGGCGCGTATCGAAATCAACATTCCGCG
AAAGAGGGCAGGAAGCTCCGACCACAGCAAGGCCATGGTCCGATTCTACG
AAGCCGTTTATCAGGCAATCGTGCGGCACGTGAACTTCGAGCTCATCAAG
TGTGTGCTGCTAGGTAGTCCCGGGTTTGTGAAGGACGACTTCTTCGCGTT
TTTGAACCTAACGGCGGTCCAAAGGGAGGAGAGGGCAATCGTGCGGCACG
TGAACTTCGAGCTCATCAAGTGTGTGCTGCTAGGTAGTCCCGGGTTTGTG
AAGGACGACTTCTTCGCGTTTTTGAACCTAACGGCGGTCCAAAGGGAGGA
GAGGGTCCTGATCGAGAATAAGTCGAAGTTTGTCCTGGTTCACGCTACCT
CGGGGCACAAGCGTGCCGTGGAGGACATTTTGTCTCAACCCTCGGTGCAG
TCGAGGCTCTCGGACACGAAAGCAGCGGAGGAAATACGAGCGCTTGCCAG
TTTTTTCGGCATGCTCAAAAAGGACCCAGAGAGGGCTCACTACGGGTACA
ACGTCCTGATCGAGAATAAGTCGAAGTTTGTCCTGGTTCACGCTACCTCG
GGGCACAAGCGTGCCGTGGAGGACATTTTGTCTCAACCCTCGGTGCAGTC
GAGGCTCTCGGACACGAAAGCAGCGGAGGAAATACGAGCGCTTGCCAGTT
TTTTCGGCATGCTCAAAAAGGACCCAGAGAGGGCTCACTACGGGTACAAC
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