mRNA_H-elongata_contig82276.15884.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82276.15884.1
Unique NamemRNA_H-elongata_contig82276.15884.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: A0A6H5L8Q2_9PHAE (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8Q2_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 8.340e-43
Identity = 76/86 (88.37%), Postives = 84/86 (97.67%), Query Frame = 1 
Query:    1 EIDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECLK 258
            +IDPEMVEVHRFVVD+Y+QKFP LDSLIPQPADYV+TVQVMRNEMDMTQV+L+SALPQTTVMVVSVTGSTTSGQPLSE+DL EC+K
Sbjct:  171 DIDPEMVEVHRFVVDRYSQKFPELDSLIPQPADYVRTVQVMRNEMDMTQVELDSALPQTTVMVVSVTGSTTSGQPLSEEDLHECIK 256
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: A0A7S2C7I0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.250e-26
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    4 IDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECLK 258
            ID EMV VH++VVD Y++KFP L+SL+PQ  DY++ VQ + NEMDMT VDL   LP   V+ VS+TGSTTSGQPLSE DL +C++
Sbjct:  119 IDDEMVNVHKYVVDTYSKKFPELESLVPQRLDYMQVVQTIGNEMDMTMVDLSDILPNAVVISVSMTGSTTSGQPLSESDLSQCMQ 203
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: A0A836CKH5_9STRA (Nop domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.180e-26
Identity = 51/86 (59.30%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 EIDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECLK 258
            +ID E+V+VHRFVVD Y+ KFP L+S++  P DY++TVQ+M+NEMDMT++ L++ LPQT+VMVVSVTGSTT G+ L E +L+  L+
Sbjct:  127 DIDDELVQVHRFVVDAYSPKFPELESIVTDPGDYIRTVQLMKNEMDMTRLPLDTVLPQTSVMVVSVTGSTTPGKALGEAELKRVLE 212
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: A0A7S0WKG3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WKG3_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 1.010e-24
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 EIDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECLKA 261
            E+D ++  VH+F+ DKY  KFP L+SL+  P DY + V+ + NEMDMT V+L+  LP  T+MVVSVTGSTT+G+PLSE+DL + L A
Sbjct:   96 EVDNDIAVVHQFIRDKYRAKFPELESLVLHPIDYARVVKAIGNEMDMTNVELDGVLPSATIMVVSVTGSTTNGEPLSENDLNKTLAA 182
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: F0YQT3_AURAN (Nop domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQT3_AURAN)

HSP 1 Score: 103 bits (258), Expect = 1.040e-24
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    4 IDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECL 255
            ID E+ ++HR+V D YA+KFP LD+L+P   +Y++ V  MRNEMDMT VDL   LP T VMVVSVTGSTTSGQPL   +L EC+
Sbjct:   96 IDAEVHQLHRYVNDVYAKKFPELDTLVPSKMEYMRVVDRMRNEMDMTAVDLSDVLPPTVVMVVSVTGSTTSGQPLGAGELDECV 179
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: A0A7R9UDN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDN0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.200e-24
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    4 IDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECLK 258
            I+ E  +V RFV ++YA KFP L+SL+P+  DY +TV+V++N MD+++V L   LP  TVMVVSVTGSTTSG+PL E+ LQECLK
Sbjct:  119 IEAETDKVFRFVAEQYAVKFPELESLVPKALDYARTVRVIKNNMDLSRVQLNDILPSATVMVVSVTGSTTSGEPLKEEVLQECLK 203
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: A0A7S4DKU2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKU2_HETAK)

HSP 1 Score: 103 bits (258), Expect = 2.680e-24
Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 EIDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECLK 258
            +ID E++ +HR+V D Y++KFP L+SL+P   +Y++ VQ + NEMDMT+V+L   LP  +VM+VSVTGSTTSGQPL E DL ECL+
Sbjct:   64 DIDDEIINIHRYVCDVYSKKFPELESLLPNKLEYMQVVQRIGNEMDMTEVELSDILPSASVMLVSVTGSTTSGQPLPEADLAECLE 149
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: A0A7S4E5R5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5R5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.350e-24
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    4 IDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECLK 258
            +D E+ EVH +V D Y +KFP L++L+P   +Y++ V  M NEMDMTQVDL   LP T VMVVSVTGSTTSGQPL+E +L EC++
Sbjct:  122 MDAELHEVHAYVNDLYGKKFPELETLVPSKLEYLRVVAQMGNEMDMTQVDLSGILPPTVVMVVSVTGSTTSGQPLTESELGECMR 206
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: A0A7S3ZRH5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRH5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.060e-23
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    4 IDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECLK 258
            +D E+ EVH +V D Y +KFP L++L+P   +Y++ V  M NEMDMTQVDL   LP T VMVVSVTGSTTSGQPL+E +L EC++
Sbjct:  122 MDAELHEVHAYVNDLYGKKFPELETLVPSKLEYLRVVAQMGNEMDMTQVDLSGILPPTVVMVVSVTGSTTSGQPLTESELGECMR 206
[Close]
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Match: C1FFZ1_MICCC (Nop domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1FFZ1_MICCC)

HSP 1 Score: 102 bits (255), Expect = 1.070e-23
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 EIDPEMVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESALPQTTVMVVSVTGSTTSGQPLSEDDLQECLKA 261
            EI+ E+  VH F+ D+Y  KFP L+SL+  P DY + V+ + NEMDMT+V+LES LP  T+MVVSVTGSTT+GQPLS DDL   ++A
Sbjct:  116 EIENEIQVVHNFIRDRYRSKFPELESLVMHPIDYARVVKAIGNEMDMTKVELESVLPSATIMVVSVTGSTTNGQPLSADDLDTTVRA 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82276.15884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Q2_9PHAE8.340e-4388.37Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2C7I0_9STRA4.250e-2661.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CKH5_9STRA6.180e-2659.30Nop domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S0WKG3_9CHLO1.010e-2455.17Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
F0YQT3_AURAN1.040e-2460.71Nop domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7R9UDN0_9STRA1.200e-2458.82Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4DKU2_HETAK2.680e-2456.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4E5R5_9STRA4.350e-2458.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZRH5_9STRA1.060e-2358.82Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
C1FFZ1_MICCC1.070e-2357.47Nop domain-containing protein n=2 Tax=Micromonas T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82276contigH-elongata_contig82276:1275..2345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue2.1e-33
Seed eggNOG ortholog2880.D8LKU3
Preferred namePRPF31
KEGG koko:K12844
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001654,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005687,GO:0005690,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006325,GO:0006342,GO:0006346,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016604,GO:0016607,GO:0017069,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030621,GO:0030622,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034708,GO:0035097,GO:0040029,GO:0043010,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060041,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070417,GO:0070990,GO:0071005,GO:0071011,GO:0071166,GO:0071339,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsCOG1498@1,KOG2574@2759
Ec32 ortholog descriptionNOSIC
Ec32 orthologEc-11_005570.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82276.15884.1prot_H-elongata_contig82276.15884.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82276 1290..2345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.586729-UTR-H-elongata_contig82276:1274..12891622931229.586729-UTR-H-elongata_contig82276:1274..1289Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82276 1275..1289 +
1691679751.1656518-UTR-H-elongata_contig82276:1274..12891691679751.1656518-UTR-H-elongata_contig82276:1274..1289Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig82276 1275..1289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931229.6043742-CDS-H-elongata_contig82276:1289..14091622931229.6043742-CDS-H-elongata_contig82276:1289..1409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82276 1290..1409 +
1691679751.1808717-CDS-H-elongata_contig82276:1289..14091691679751.1808717-CDS-H-elongata_contig82276:1289..1409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82276 1290..1409 +
1622931229.622523-CDS-H-elongata_contig82276:2213..23451622931229.622523-CDS-H-elongata_contig82276:2213..2345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82276 2214..2345 +
1691679751.19846-CDS-H-elongata_contig82276:2213..23451691679751.19846-CDS-H-elongata_contig82276:2213..2345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82276 2214..2345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82276.15884.1

>prot_H-elongata_contig82276.15884.1 ID=prot_H-elongata_contig82276.15884.1|Name=mRNA_H-elongata_contig82276.15884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MVEVHRFVVDKYAQKFPGLDSLIPQPADYVKTVQVMRNEMDMTQVDLESA
LPQTTVMVVSVTGSTTSGQPLSEDDLQECLKAR*
back to top

mRNA from alignment at H-elongata_contig82276:1275..2345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82276.15884.1 ID=mRNA_H-elongata_contig82276.15884.1|Name=mRNA_H-elongata_contig82276.15884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1071bp|location=Sequence derived from alignment at H-elongata_contig82276:1275..2345+ (Himanthalia elongata Himel1 dioecious)
GAAATCGACCCGGAAATGGTCGAGGTGCACCGATTCGTGGTCGACAAGTA
CGCGCAGAAGTTCCCTGGACTGGATAGCCTCATCCCGCAGCCGGCAGACT
ACGTGAAGACCGTGCAAGTCATGCGGAACGAGATGGTGCGCCCGCATTAT
CCTGCTCCGTTCCATGTTGACGCGTCCGTGTTGGTGTGTGACGCGTGGCT
TGATGTTTGAGCGGTTGATTATTTCTTCTCTTGTCGTCTTGATGCCCCTC
TTGCAGTGGAATGACACGAGACTGATTGAGATGGAATGGAATGGGACGAA
ATGACGTGCGATGGGATAGGGTAATGTAAAGTGGGATGGGATGGTGGCAT
GTGGCCGGATGAGACGAACTGGATTCGATGGTGCGGGATGTGTGAAACAC
TCCAGTTATATATGGGTGTGTTCATTTGCGTATGACATGACTCTACCAGA
GAATTGCGAATCTGTTCGACCCTGTCCTCGCTAATGAATACCAAGATACT
TCCTTGGTTAATGAACACAAAAGCGCTTATTAAGAAATTAGTGGTTATCG
CTGAGAACGTGTCTAGCTACCACGGGGTACATGCTTCCAGTAGCTGCCCG
GCACGCTCTTCTATTCCCGATGTATTGTTGCGTATCGTATCTTACCGTAT
CGTATCGCGTTAGCTATCGTTCGCACTAACCATTCAGCCCCCTACACACA
CAACCGCAATAGAGTCGTCTTTAGCAACAACGCCCACAGGCTGCCGTCCC
TCGCCCCTGGGGCCGTCGATCCAATCCATCCCGTCCCCCGGATCAGATTG
AACCCAGTCGGCCTCATTCAACTATATTTCTCACCCCTCCATCCTCCCTC
TTGAAGCCGCATGATCCATGCTCTATCAGAGAAAACATGCAAAACTATAT
TACCCCCCCCCCGCTCCAAACATGCTGGGTTTCCAACAGGACATGACGCA
AGTGGATCTAGAGTCGGCGCTTCCGCAGACAACGGTGATGGTCGTGAGTG
TGACGGGCTCGACCACGAGTGGTCAGCCGCTATCGGAGGATGACCTTCAG
GAGTGCCTCAAGGCGAGATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig82276:1275..2345+

>mRNA_H-elongata_contig82276.15884.1 ID=mRNA_H-elongata_contig82276.15884.1|Name=mRNA_H-elongata_contig82276.15884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig82276:1275..2345+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGAGGTGCACCGATTCGTGGTCGACAAGTACGCGCAGAAGTTCCC
TGGACTGGATAGCCTCATCCCGCAGCCGGCAGACTACGTGAAGACCGTGC
AAGTCATGCGGAACGAGATGATGGTCGAGGTGCACCGATTCGTGGTCGAC
AAGTACGCGCAGAAGTTCCCTGGACTGGATAGCCTCATCCCGCAGCCGGC
AGACTACGTGAAGACCGTGCAAGTCATGCGGAACGAGATGGACATGACGC
AAGTGGATCTAGAGTCGGCGCTTCCGCAGACAACGGTGATGGTCGTGAGT
GTGACGGGCTCGACCACGAGTGGTCAGCCGCTATCGGAGGATGACCTTCA
GGAGTGCCTCAAGGCGAGATAAGACATGACGCAAGTGGATCTAGAGTCGG
CGCTTCCGCAGACAACGGTGATGGTCGTGAGTGTGACGGGCTCGACCACG
AGTGGTCAGCCGCTATCGGAGGATGACCTTCAGGAGTGCCTCAAGGCGAG
ATAA
back to top