mRNA_H-elongata_contig82027.15867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig82027.15867.1
Unique NamemRNA_H-elongata_contig82027.15867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig82027.15867.1 vs. uniprot
Match: D8LCN2_ECTSI (Adenine nucleotide translocator 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN2_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.210e-22
Identity = 60/107 (56.07%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:  169 DFSGDQSI-LRRLSLFVLVAGATAVALGYSHEHGMTEFHLFKSWTGDALPHPSPHATAGDDHGGLRVTPLDSMVTGLGAGFTRALSRTLTFPLDTLKTRRQVSRLRA 486
            D S D  + +R+LS+   +AG  AVA+ Y  EHGM  F   + W G A PH  PHA A D  G + +TPL S+ TGLGAGFTRA SRTLTFPLDT+KTR Q+SRL A
Sbjct:  103 DGSADLMVSMRQLSILGALAGVAAVAVDY--EHGMAGFLWIQDWAGGAAPHFPPHAAA-DGAGQVHLTPLRSVATGLGAGFTRAASRTLTFPLDTIKTRSQLSRLGA 206
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BLAST of mRNA_H-elongata_contig82027.15867.1 vs. uniprot
Match: A0A6H5JB89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB89_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.560e-22
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:  193 LRRLSLFVLVAGATAVALGYSHEHGMTEFHLFKSWTGDALPHPSPHATAGDDHGGLRVTPLDSMVTGLGAGFTRALSRTLTFPLDTLKTRRQVSRLRA 486
            +R+LS+   +AG  AVA+GY  EHGM  F   + W G   PH  P  TA D  G + +TPL S+ TGLGAGFTRA+SRTLTFPLDT+KTR Q+SRL A
Sbjct:  204 MRQLSILGALAGVAAVAVGY--EHGMAGFLWIQDWAGVTAPHFPPR-TAADGAGQVHLTPLKSVATGLGAGFTRAVSRTLTFPLDTIKTRSQLSRLGA 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82027.15867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN2_ECTSI1.210e-2256.07Adenine nucleotide translocator 3 n=1 Tax=Ectocarp... [more]
A0A6H5JB89_9PHAE8.560e-2257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82027contigH-elongata_contig82027:893..2051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue8.8e-20
Seed eggNOG ortholog2880.D8LCN2
KEGG rclassRC00004,RC00064
KEGG koko:K14682,ko:K15111,ko:K15113
KEGG TC2.A.29.18,2.A.29.5
KEGG ReactionR00259
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
EC2.3.1.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-03_002250.1
Exons2
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931228.0061066-CDS-H-elongata_contig82027:892..11891622931228.0061066-CDS-H-elongata_contig82027:892..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82027 893..1189 +
1691679750.5119975-CDS-H-elongata_contig82027:892..11891691679750.5119975-CDS-H-elongata_contig82027:892..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82027 893..1189 +
1622931228.0315888-CDS-H-elongata_contig82027:1862..20511622931228.0315888-CDS-H-elongata_contig82027:1862..2051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82027 1863..2051 +
1691679750.5258224-CDS-H-elongata_contig82027:1862..20511691679750.5258224-CDS-H-elongata_contig82027:1862..2051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig82027 1863..2051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82027.15867.1prot_H-elongata_contig82027.15867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig82027 893..2051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig82027.15867.1

>prot_H-elongata_contig82027.15867.1 ID=prot_H-elongata_contig82027.15867.1|Name=mRNA_H-elongata_contig82027.15867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MLLLLATSKEGLLEARNPLESPACTSNTTLGDAGEFEYTEAFAREDPREA
TAVGVADFSGDQSILRRLSLFVLVAGATAVALGYSHEHGMTEFHLFKSWT
GDALPHPSPHATAGDDHGGLRVTPLDSMVTGLGAGFTRALSRTLTFPLDT
LKTRRQVSRLRA
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mRNA from alignment at H-elongata_contig82027:893..2051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig82027.15867.1 ID=mRNA_H-elongata_contig82027.15867.1|Name=mRNA_H-elongata_contig82027.15867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1159bp|location=Sequence derived from alignment at H-elongata_contig82027:893..2051+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTTGTTATTGGCAACCTCGAAAGAAGGATTGCTCGAGGCCCGCAA
CCCTCTAGAATCGCCCGCGTGTACCTCGAACACCACCCTCGGTGACGCAG
GGGAGTTCGAATATACCGAGGCGTTCGCGCGGGAAGACCCGCGGGAGGCT
ACTGCGGTTGGGGTAGCGGACTTTTCTGGGGATCAGTCGATTTTGCGGCG
ACTCTCGCTATTCGTCCTGGTGGCTGGTGCGACCGCCGTGGCTCTCGGCT
ACTCGCACGAGCACGGCATGACCGAGTTTCACTTGTTCAAGAGCTGGGTG
AGCGATAAAAAGCGTCGTCGAAAGGGGAAGGGGGGTTCTTGTAGCAATCG
AGCGAGAAAACGGCTCTCTCCTCTTCCTCCTCCACCTCGTTTAGTTCTTT
CGAATGGGTGCGGTTTTATTCATAATAGGATCTTTCTTTGATACATATAC
AGATTCCCCGCAACTTTCAAACCTTCAAACCTTCAAGGGGGAAATATAAG
AAGAATGTGTCTATTTTATTGTTTTTTTCTTAGCTCCTCAAAAAACCGCG
CACGGAAATCTCTCTCCGTTTTTATCTACATTAATTTCTGTATTTCTCTG
CCTCCTGCATCTCCCTAAAATTACTGAAATCGCCACGTGGAGCTTCTGTG
TTTTTTTGTTTTTTTTCGTAGCCCACCGAGTCGTTTATAAAGTACAAACG
TGATACGTATGGTTTGCCGTGATTCACGTAAGTAAATTAACATACGACTG
CACGCGTGGGAAATTTCTCGGGAGCATCTTTGTCCTCGAAACAACTCTTC
ACAAGCGCATAGCAAGATATCATTATCGAATTGATTCCCAAATGCTGCAA
AACCCCACGAGCTGATAGCAAGCCCCTCTCGGGCCCACCCCCCTGCTCTT
GTTGTTCTTGTCCATCATGTAGACCGCTCTGCCCCCCCCCCCCCCCCCCC
CCCCTTGAACTCGTCGTCAGACCGGGGATGCTCTGCCTCATCCGTCCCCT
CACGCCACTGCCGGTGATGACCACGGCGGTCTGCGCGTGACACCCCTCGA
CAGCATGGTCACGGGGCTCGGCGCAGGGTTCACACGAGCTCTGTCCCGCA
CGCTAACGTTCCCGCTTGACACACTCAAGACCCGGAGACAAGTCTCCAGA
CTCCGTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig82027:893..2051+

>mRNA_H-elongata_contig82027.15867.1 ID=mRNA_H-elongata_contig82027.15867.1|Name=mRNA_H-elongata_contig82027.15867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig82027:893..2051+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTTGTTATTGGCAACCTCGAAAGAAGGATTGCTCGAGGCCCGCAA
CCCTCTAGAATCGCCCGCGTGTACCTCGAACACCACCCTCGGTGACGCAG
GGGAGTTCGAATATACCGAGGCGTTCGCGCGGGAAGACCCGCGGGAGGCT
ACTGCGGTTGGGGTAGCGGACTTTTCTGGGGATCAGTCGATTTTGCGGCG
ACTCTCGCTATTCGTCCTGGTGGCTGGTGCGACCGCCGTGGCTCTCGGCT
ACTCGCACGAGCACGGCATGACCGAGTTTCACTTGTTCAAGAGCTGGATG
TTGTTGTTATTGGCAACCTCGAAAGAAGGATTGCTCGAGGCCCGCAACCC
TCTAGAATCGCCCGCGTGTACCTCGAACACCACCCTCGGTGACGCAGGGG
AGTTCGAATATACCGAGGCGTTCGCGCGGGAAGACCCGCGGGAGGCTACT
GCGGTTGGGGTAGCGGACTTTTCTGGGGATCAGTCGATTTTGCGGCGACT
CTCGCTATTCGTCCTGGTGGCTGGTGCGACCGCCGTGGCTCTCGGCTACT
CGCACGAGCACGGCATGACCGAGTTTCACTTGTTCAAGAGCTGGACCGGG
GATGCTCTGCCTCATCCGTCCCCTCACGCCACTGCCGGTGATGACCACGG
CGGTCTGCGCGTGACACCCCTCGACAGCATGGTCACGGGGCTCGGCGCAG
GGTTCACACGAGCTCTGTCCCGCACGCTAACGTTCCCGCTTGACACACTC
AAGACCCGGAGACAAGTCTCCAGACTCCGTGCCACCGGGGATGCTCTGCC
TCATCCGTCCCCTCACGCCACTGCCGGTGATGACCACGGCGGTCTGCGCG
TGACACCCCTCGACAGCATGGTCACGGGGCTCGGCGCAGGGTTCACACGA
GCTCTGTCCCGCACGCTAACGTTCCCGCTTGACACACTCAAGACCCGGAG
ACAAGTCTCCAGACTCCGTGCC
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