mRNA_H-elongata_contig81994.15863.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81994.15863.1
Unique NamemRNA_H-elongata_contig81994.15863.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81994.15863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81994contigH-elongata_contig81994:629..1162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size513
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931227.3966246-CDS-H-elongata_contig81994:628..11411622931227.3966246-CDS-H-elongata_contig81994:628..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81994 629..1141 -
1691679750.2882977-CDS-H-elongata_contig81994:628..11411691679750.2882977-CDS-H-elongata_contig81994:628..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81994 629..1141 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931227.416334-UTR-H-elongata_contig81994:1141..11621622931227.416334-UTR-H-elongata_contig81994:1141..1162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81994 1142..1162 -
1691679750.2969193-UTR-H-elongata_contig81994:1141..11621691679750.2969193-UTR-H-elongata_contig81994:1141..1162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81994 1142..1162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81994.15863.1prot_H-elongata_contig81994.15863.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81994 629..1141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81994.15863.1

>prot_H-elongata_contig81994.15863.1 ID=prot_H-elongata_contig81994.15863.1|Name=mRNA_H-elongata_contig81994.15863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MTLINSCRGIALEIVQRSNSPNDGWGNLETHYRAKGTKEILRLSHEINGK
IMGPGGDPFKFMMEIDGLAADLNRSGDKSVTELRKCVIIVSGLPTDYEME
CRMLENSPVGLNKAEIERVVGNQFNRRLRQQHNSKAMSASKGHIKVNRGK
GGGRRHHPKFNRKCFNCGKE*
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mRNA from alignment at H-elongata_contig81994:629..1162-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81994.15863.1 ID=mRNA_H-elongata_contig81994.15863.1|Name=mRNA_H-elongata_contig81994.15863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig81994:629..1162- (Himanthalia elongata Himel1 dioecious)
CAAAATGCGCATGCGGCTTGGATGACTCTAATTAACAGCTGCAGAGGAAT
TGCACTTGAAATCGTGCAACGTAGCAACTCACCGAACGATGGGTGGGGAA
ATCTTGAAACACACTACAGAGCAAAGGGGACAAAGGAGATACTTCGTCTG
TCCCATGAAATTAACGGGAAAATAATGGGACCAGGTGGGGACCCATTCAA
ATTTATGATGGAAATTGACGGGCTTGCAGCTGATCTCAACCGATCGGGTG
ACAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCGTATCTGGTCTC
CCTACTGACTACGAGATGGAGTGCCGCATGTTGGAAAATAGCCCTGTTGG
TCTTAACAAGGCTGAGATTGAGCGTGTCGTAGGGAATCAGTTCAACAGAC
GTCTCAGGCAACAACATAATTCGAAGGCTATGTCGGCATCGAAGGGCCAC
ATTAAGGTGAATCGCGGAAAGGGGGGGGGCAGAAGACACCACCCCAAATT
CAACCGAAAGTGCTTCAATTGCGGAAAGGAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig81994:629..1162-

>mRNA_H-elongata_contig81994.15863.1 ID=mRNA_H-elongata_contig81994.15863.1|Name=mRNA_H-elongata_contig81994.15863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig81994:629..1162- (Himanthalia elongata Himel1 dioecious)
ATGACTCTAATTAACAGCTGCAGAGGAATTGCACTTGAAATCGTGCAACG
TAGCAACTCACCGAACGATGGGTGGGGAAATCTTGAAACACACTACAGAG
CAAAGGGGACAAAGGAGATACTTCGTCTGTCCCATGAAATTAACGGGAAA
ATAATGGGACCAGGTGGGGACCCATTCAAATTTATGATGGAAATTGACGG
GCTTGCAGCTGATCTCAACCGATCGGGTGACAAATCCGTGACTGAATTAA
GAAAATGCGTAATTATCGTATCTGGTCTCCCTACTGACTACGAGATGGAG
TGCCGCATGTTGGAAAATAGCCCTGTTGGTCTTAACAAGGCTGAGATTGA
GCGTGTCGTAGGGAATCAGTTCAACAGACGTCTCAGGCAACAACATAATT
CGAAGGCTATGTCGGCATCGAAGGGCCACATTAAGGTGAATCGCGGAAAG
GGGGGGGGCAGAAGACACCACCCCAAATTCAACCGAAAGTGCTTCAATTG
CGGAAAGGAATGAATGACTCTAATTAACAGCTGCAGAGGAATTGCACTTG
AAATCGTGCAACGTAGCAACTCACCGAACGATGGGTGGGGAAATCTTGAA
ACACACTACAGAGCAAAGGGGACAAAGGAGATACTTCGTCTGTCCCATGA
AATTAACGGGAAAATAATGGGACCAGGTGGGGACCCATTCAAATTTATGA
TGGAAATTGACGGGCTTGCAGCTGATCTCAACCGATCGGGTGACAAATCC
GTGACTGAATTAAGAAAATGCGTAATTATCGTATCTGGTCTCCCTACTGA
CTACGAGATGGAGTGCCGCATGTTGGAAAATAGCCCTGTTGGTCTTAACA
AGGCTGAGATTGAGCGTGTCGTAGGGAATCAGTTCAACAGACGTCTCAGG
CAACAACATAATTCGAAGGCTATGTCGGCATCGAAGGGCCACATTAAGGT
GAATCGCGGAAAGGGGGGGGGCAGAAGACACCACCCCAAATTCAACCGAA
AGTGCTTCAATTGCGGAAAGGAATGA
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