mRNA_H-elongata_contig81705.15837.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81705.15837.1
Unique NamemRNA_H-elongata_contig81705.15837.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig81705.15837.1 vs. uniprot
Match: D8LB26_ECTSI (ELMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB26_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.620e-17
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 YYTQGDEEDPETGVRSSFRVERPAPPRALTLYRIKEAFPFAGTFHFRLKV 153
            Y  QGD++DPETGV+SSFRV+RP PPR LTL+R++E FPF GTFHFRLKV
Sbjct:    9 YVIQGDDDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKV 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81705.15837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB26_ECTSI1.620e-1774.00ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81705contigH-elongata_contig81705:2335..2508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2e-14
Seed eggNOG ortholog2880.D8LB26
EggNOG free text desc.ELMO domain-containing protein
EggNOG OGsKOG2998@1,KOG2998@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931224.9192748-CDS-H-elongata_contig81705:2334..25081622931224.9192748-CDS-H-elongata_contig81705:2334..2508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81705 2335..2508 -
1691679749.26861-CDS-H-elongata_contig81705:2334..25081691679749.26861-CDS-H-elongata_contig81705:2334..2508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81705 2335..2508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81705.15837.1prot_H-elongata_contig81705.15837.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81705 2335..2508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81705.15837.1

>prot_H-elongata_contig81705.15837.1 ID=prot_H-elongata_contig81705.15837.1|Name=mRNA_H-elongata_contig81705.15837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
AYYTQGDEEDPETGVRSSFRVERPAPPRALTLYRIKEAFPFAGTFHFRLK
VRLFNLK*
back to top

mRNA from alignment at H-elongata_contig81705:2335..2508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81705.15837.1 ID=mRNA_H-elongata_contig81705.15837.1|Name=mRNA_H-elongata_contig81705.15837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig81705:2335..2508- (Himanthalia elongata Himel1 dioecious)
GCCTATTACACACAGGGAGACGAAGAAGACCCGGAGACTGGCGTCCGGTC
AAGCTTTCGGGTTGAGCGGCCGGCCCCGCCCCGAGCCCTCACCCTGTATC
GGATTAAAGAGGCGTTCCCCTTCGCCGGGACGTTCCACTTCCGCCTTAAG
GTGAGGTTATTTAATCTCAAATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig81705:2335..2508-

>mRNA_H-elongata_contig81705.15837.1 ID=mRNA_H-elongata_contig81705.15837.1|Name=mRNA_H-elongata_contig81705.15837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig81705:2335..2508- (Himanthalia elongata Himel1 dioecious)
GCCTATTACACACAGGGAGACGAAGAAGACCCGGAGACTGGCGTCCGGTC
AAGCTTTCGGGTTGAGCGGCCGGCCCCGCCCCGAGCCCTCACCCTGTATC
GGATTAAAGAGGCGTTCCCCTTCGCCGGGACGTTCCACTTCCGCCTTAAG
GTGAGGTTATTTAATCTCAAATAGGCCTATTACACACAGGGAGACGAAGA
AGACCCGGAGACTGGCGTCCGGTCAAGCTTTCGGGTTGAGCGGCCGGCCC
CGCCCCGAGCCCTCACCCTGTATCGGATTAAAGAGGCGTTCCCCTTCGCC
GGGACGTTCCACTTCCGCCTTAAGGTGAGGTTATTTAATCTCAAATAG
back to top