mRNA_H-elongata_contig81633.15830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81633.15830.1
Unique NamemRNA_H-elongata_contig81633.15830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81633.15830.1 vs. uniprot
Match: D7FNB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB8_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 5.860e-89
Identity = 161/280 (57.50%), Postives = 195/280 (69.64%), Query Frame = 1 
Query:    1 QYSEALTVETSSGGSDLDPLRLKAGAVVEFLDWILPEAPTPGA-VGGY-LGFPAEALLTTGEEAAGTLLGLEHHNVGGLLARGDLCRLRARMAMLSGASLEEEGHWREESVQWFVRAVTVAPQNAEALSTAGEGSLEYGKRSLRLYRNIV--EAGQGRVAISVSPPPL--HAQGMQTSAIARLQEAGSLFSRAASAEASDSDVAYNAACAYALCGDHGSCSRAFREFCRRLADAGTATAGRRDAAIRSLREARSDGDLESVRTTDWFVNLVRRTEANLRG 822
            +YSEAL  ETSSGGSD D LRLKAG VV FLDW LPEA  P A +GG  +GFPAE +L  GEEA   LL L+  ++ G+LA+ DLCRLRAR +MLSGAS+EEEG  REESV WF RA T  PQ+A  L+ AGEG LEYG+RS+ LY+ +     GQ       +P P   H +GM+ SAI RLQEAG L + A S + SD++  YNAACA+AL GD GSC RA  E+CRRL  A   ++G+R+AA RSLREA +D DLE VR   WFV+L+R T+A L G
Sbjct:  246 KYSEALASETSSGGSDTDILRLKAGTVVNFLDWALPEALPPEAPIGGSDVGFPAEEILAAGEEAVQALLALDDSSMDGMLAKADLCRLRARTSMLSGASVEEEGARREESVAWFARAATGFPQDAGVLTAAGEGLLEYGRRSMALYQEVAVGSVGQSPYGYGSAPGPAAPHVEGMRMSAITRLQEAGRLLAEACSFDVSDANSPYNAACAFALAGDPGSCFRALSEYCRRLTLAANGSSGKREAARRSLREAGNDVDLEEVRGAPWFVDLLRGTDATLVG 525
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81633.15830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNB8_ECTSI5.860e-8957.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81633contigH-elongata_contig81633:342..2326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-24_000190.1
Exons4
Model size831
Cds size831
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81633.15830.1prot_H-elongata_contig81633.15830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81633 342..2326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931224.1786208-CDS-H-elongata_contig81633:341..6381622931224.1786208-CDS-H-elongata_contig81633:341..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81633 342..638 -
1691679749.0022557-CDS-H-elongata_contig81633:341..6381691679749.0022557-CDS-H-elongata_contig81633:341..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81633 342..638 -
1622931224.2045696-CDS-H-elongata_contig81633:953..12331622931224.2045696-CDS-H-elongata_contig81633:953..1233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81633 954..1233 -
1691679749.0119574-CDS-H-elongata_contig81633:953..12331691679749.0119574-CDS-H-elongata_contig81633:953..1233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81633 954..1233 -
1622931224.2245057-CDS-H-elongata_contig81633:1470..15851622931224.2245057-CDS-H-elongata_contig81633:1470..1585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81633 1471..1585 -
1691679749.0209138-CDS-H-elongata_contig81633:1470..15851691679749.0209138-CDS-H-elongata_contig81633:1470..1585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81633 1471..1585 -
1622931224.2446425-CDS-H-elongata_contig81633:2187..23261622931224.2446425-CDS-H-elongata_contig81633:2187..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81633 2188..2326 -
1691679749.030044-CDS-H-elongata_contig81633:2187..23261691679749.030044-CDS-H-elongata_contig81633:2187..2326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81633 2188..2326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81633.15830.1

>prot_H-elongata_contig81633.15830.1 ID=prot_H-elongata_contig81633.15830.1|Name=mRNA_H-elongata_contig81633.15830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
QYSEALTVETSSGGSDLDPLRLKAGAVVEFLDWILPEAPTPGAVGGYLGF
PAEALLTTGEEAAGTLLGLEHHNVGGLLARGDLCRLRARMAMLSGASLEE
EGHWREESVQWFVRAVTVAPQNAEALSTAGEGSLEYGKRSLRLYRNIVEA
GQGRVAISVSPPPLHAQGMQTSAIARLQEAGSLFSRAASAEASDSDVAYN
AACAYALCGDHGSCSRAFREFCRRLADAGTATAGRRDAAIRSLREARSDG
DLESVRTTDWFVNLVRRTEANLRGGI*
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mRNA from alignment at H-elongata_contig81633:342..2326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81633.15830.1 ID=mRNA_H-elongata_contig81633.15830.1|Name=mRNA_H-elongata_contig81633.15830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1985bp|location=Sequence derived from alignment at H-elongata_contig81633:342..2326- (Himanthalia elongata Himel1 dioecious)
CAGTACTCCGAAGCGCTGACTGTGGAAACAAGCAGCGGAGGATCAGACTT
GGACCCCTTGAGACTCAAGGCGGGAGCGGTGGTGGAGTTTCTGGATTGGA
TATTGCCCGAGGCTCCTACCCCGGGTGCAGTCGGTGGGTGTATGAACACA
CGCAGCAGACGCAGGGTTCGATCGTAGGCATCGAGCCATTACTTCAACCC
TCACGCTTTGTTTAGTAGAAAATATTATCTGGGATATTGTCTACGGAATT
TATTATACGAACTCTGGGGATGGTATCGTACGGACATGGCGATGTCGTGT
CGCCGGATAGAGCCTCCCGATCGTAATGCTAGTATAGCTAGAAGTATAAT
CGGCCTGTAACAATCGATGGATGTGACACGGAGGGCGAGGCGTCCGGCGG
AGAGAGCTCGACCAACGGCAACCGATCGTGAAACGCATGTCGCGTTTCCC
CGAAAGACTCCGAATTCCGGCTGGCACTTTCCCCGAATAGTCGCCCCAGA
CCAATTTAATTTTAAGTGTTCTCTCCGGCCCAATCGGTGGTCATTAACGA
TCGGTGATTGGTAATAATCGGTGTCTTCTCTTGCTCGAAGTAGAAATGCG
CGACCGGTTGGAACACCTGGGATCGAGGCCTGGAAAAGATGCGTGGTTCG
CTCCTAGGAAACCGTGCTTCCTGGCAGTATTTTTATTGCTCTCACAGGTA
TCCCTGACTCGTGATGCGCCGTGCTCTTCCCGATATTACAGACCTTGGGT
TTCCAGCAGAGGCGCTTTTAACCACGGGTGAGGAAGCAGCGGGGACTTTG
CTTGGCCTCGAGCATCACAACGTCGGCGGATTACTCGCAAGGGGGGACCT
TTGCAGGTGCACGGTCGAAATATATATTCAACAAGCAGCGACCCCGAGCG
TATGGGATTTCTCACTTGCGTTGACGGTGTTTTGACTTCAGGCAATATCG
CGCCCGTCATAAATATTATATGGATATGTAAGGGACGATACATGTTTCTC
GTGTTGGTTCCTTGCGTGCACCAAACCCTCGTGCCATAAGCGTTTGATGC
AAGCCCACACCTCTTTTTTAATTCCACGTACGTATGCTTGAAGGTTGCGA
GCCAGAATGGCTATGCTGTCTGGCGCTAGCTTGGAGGAAGAAGGTCATTG
GCGGGAAGAGTCGGTTCAATGGTTCGTTAGGGCCGTGACCGTAGCTCCTC
AGAATGCGGAGGCGCTTAGCACGGCTGGAGAGGGTTCGCTGGAGTACGGA
AAGCGGTCGCTGCGCTTGTACAGAAACATCGTGGAGGCCGGTCAGGGACG
GGTCGCTATCTCGGTTTCCCCGCCGCCATTACACGCCCAAGGGATGCAAA
CATCCGCGATCGCTCGGCTGCAGGTAGGGCAAGGCAATTACCATTTATCT
TGGTCGTACTCCGCCTTATGTATTTTTCTTCTGGTGTTGAGAATGATTGC
TTACTCCCCAAGCGCTTGACAGGCACAACTCAAGGCACGCAAGAGAATAT
ACAGGCAAACAGACAGTGTGTCGTTTGCTGATCTACTTTCGACGTCCGGT
AACCCCTTTAACCCTTTCGGTGAAGTAGAGTTAAATCCTTTCAGTTGCTC
ATGGTCAGTAATCTCGTGCCGGGCTGCTACACCCAACAGAGAACTTACTT
AGCATTTCCGTTCTCTTGTGATTCAACCGCCTTACCAGGAGGCGGGAAGC
CTATTTTCCCGCGCGGCCTCCGCGGAAGCCTCGGATTCGGATGTTGCCTA
CAACGCCGCGTGTGCCTACGCATTATGCGGTGACCACGGCTCGTGCTCTC
GAGCTTTTCGTGAGTTCTGCCGCCGTCTCGCCGACGCAGGCACGGCAACC
GCAGGGCGGCGAGATGCAGCGATAAGGTCGCTCCGAGAAGCAAGGAGTGA
TGGAGACTTGGAAAGTGTGAGGACCACTGACTGGTTCGTAAACCTTGTCA
GGCGTACCGAGGCGAATCTTCGTGGCGGGATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig81633:342..2326-

>mRNA_H-elongata_contig81633.15830.1 ID=mRNA_H-elongata_contig81633.15830.1|Name=mRNA_H-elongata_contig81633.15830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig81633:342..2326- (Himanthalia elongata Himel1 dioecious)
CAGTACTCCGAAGCGCTGACTGTGGAAACAAGCAGCGGAGGATCAGACTT
GGACCCCTTGAGACTCAAGGCGGGAGCGGTGGTGGAGTTTCTGGATTGGA
TATTGCCCGAGGCTCCTACCCCGGGTGCAGTCGGTGGGTCAGTACTCCGA
AGCGCTGACTGTGGAAACAAGCAGCGGAGGATCAGACTTGGACCCCTTGA
GACTCAAGGCGGGAGCGGTGGTGGAGTTTCTGGATTGGATATTGCCCGAG
GCTCCTACCCCGGGTGCAGTCGGTGGGTACCTTGGGTTTCCAGCAGAGGC
GCTTTTAACCACGGGTGAGGAAGCAGCGGGGACTTTGCTTGGCCTCGAGC
ATCACAACGTCGGCGGATTACTCGCAAGGGGGGACCTTTGCAGACCTTGG
GTTTCCAGCAGAGGCGCTTTTAACCACGGGTGAGGAAGCAGCGGGGACTT
TGCTTGGCCTCGAGCATCACAACGTCGGCGGATTACTCGCAAGGGGGGAC
CTTTGCAGGTTGCGAGCCAGAATGGCTATGCTGTCTGGCGCTAGCTTGGA
GGAAGAAGGTCATTGGCGGGAAGAGTCGGTTCAATGGTTCGTTAGGGCCG
TGACCGTAGCTCCTCAGAATGCGGAGGCGCTTAGCACGGCTGGAGAGGGT
TCGCTGGAGTACGGAAAGCGGTCGCTGCGCTTGTACAGAAACATCGTGGA
GGCCGGTCAGGGACGGGTCGCTATCTCGGTTTCCCCGCCGCCATTACACG
CCCAAGGGATGCAAACATCCGCGATCGCTCGGCTGCAGGTTGCGAGCCAG
AATGGCTATGCTGTCTGGCGCTAGCTTGGAGGAAGAAGGTCATTGGCGGG
AAGAGTCGGTTCAATGGTTCGTTAGGGCCGTGACCGTAGCTCCTCAGAAT
GCGGAGGCGCTTAGCACGGCTGGAGAGGGTTCGCTGGAGTACGGAAAGCG
GTCGCTGCGCTTGTACAGAAACATCGTGGAGGCCGGTCAGGGACGGGTCG
CTATCTCGGTTTCCCCGCCGCCATTACACGCCCAAGGGATGCAAACATCC
GCGATCGCTCGGCTGCAGGAGGCGGGAAGCCTATTTTCCCGCGCGGCCTC
CGCGGAAGCCTCGGATTCGGATGTTGCCTACAACGCCGCGTGTGCCTACG
CATTATGCGGTGACCACGGCTCGTGCTCTCGAGCTTTTCGTGAGTTCTGC
CGCCGTCTCGCCGACGCAGGCACGGCAACCGCAGGGCGGCGAGATGCAGC
GATAAGGTCGCTCCGAGAAGCAAGGAGTGATGGAGACTTGGAAAGTGTGA
GGACCACTGACTGGTTCGTAAACCTTGTCAGGCGTACCGAGGCGAATCTT
CGTGGCGGGATTTGAGAGGCGGGAAGCCTATTTTCCCGCGCGGCCTCCGC
GGAAGCCTCGGATTCGGATGTTGCCTACAACGCCGCGTGTGCCTACGCAT
TATGCGGTGACCACGGCTCGTGCTCTCGAGCTTTTCGTGAGTTCTGCCGC
CGTCTCGCCGACGCAGGCACGGCAACCGCAGGGCGGCGAGATGCAGCGAT
AAGGTCGCTCCGAGAAGCAAGGAGTGATGGAGACTTGGAAAGTGTGAGGA
CCACTGACTGGTTCGTAAACCTTGTCAGGCGTACCGAGGCGAATCTTCGT
GGCGGGATTTGA
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