mRNA_H-elongata_contig81451.15814.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81451.15814.1
Unique NamemRNA_H-elongata_contig81451.15814.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 457 bits (1175), Expect = 3.860e-156
Identity = 256/378 (67.72%), Postives = 275/378 (72.75%), Query Frame = 1
Query:    1 NPLQVRPAEGQAEQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKR---PSASRAQSMIGSPGRHGGNLHPDAPGWMSHPPGA---AGYPYAMQGPPMSSSHVMGGIPAYNMPYAQGAAASGPXXXXQGSFLYYPYPTPGGYPPQ----GTYHSGPPSPNPRSIVGYGAGGHMHSPQGRDARHRQRPLYEGEDVGGGAISRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKRRGQNTEDPDDRAGDGAGG-FGETG--DYYSHPDYLGHHEA 1095
            NPLQVRPAEGQAEQENKLFVGMAPKSANE+EIRAVFA YGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAI+ALHEQYTMQGGPRPLVVKFADNKR    +A R   +IGSPGRHG   HP+A GWM HP      AGYPY M GPPMS  H+M G+P Y M Y  G A   P    QGS++YYPY  PG YPPQ    G YHSGPPSP+                                       +RPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSY+  +HAEAAIAQMNGFQIGSKRLKVQHKRRGQ+T+DPD          +G+ G  DYY HPDY+GH + 
Sbjct:  116 NPLQVRPAEGQAEQENKLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQGGPRPLVVKFADNKRGTQAAAGRLGGLIGSPGRHGSGPHPEAGGWMGHPGAGGQGAGYPYPMPGPPMSP-HMMSGMP-YGMAYGGGQAPGAPA---QGSYVYYPYGAPG-YPPQPGGPGQYHSGPPSPSRGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYSLPSHAEAAIAQMNGFQIGSKRLKVQHKRRGQSTDDPDXXXXXXXXXXYGDQGQGDYYPHPDYMGHQDG 487          
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: A0A7S1BYN5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYN5_9STRA)

HSP 1 Score: 260 bits (665), Expect = 5.630e-78
Identity = 166/358 (46.37%), Postives = 208/358 (58.10%), Query Frame = 1
Query:    4 PLQVRPAEGQ------AEQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKRPSASRAQSM----IGSPGRHGGNLHPDAPGWMSHPPGAAGYPYAMQGPPMSSSHVMGGIPAYNMPYAQGAAASGPXXXXQGSFLYYPYPTPGGYP---------------------PQGTYHSGPPSPNPRSIVGYGAGGHMHSPQGRDARHRQRPLYEGEDVGGGAISRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKR 984
            P+Q+RPA G        EQENKLF+GM  ++A+E  IR VFAS+G +REI++IRN DG+NKGCAF+KY+ R SAL AI  L+ +  M G  RPL+VKFAD K    +R   M    +GSPGR     +P +P ++   P    Y  A + PP+   H     P     Y Q ++ +         F+Y P   P GYP                     P G   +  P PNP   V    G    SP+   A  +   +Y+    G    +RP EGPPGANLFIYHLP DL+DADLATAFAPFG+V+SAKVY+D+ +GESKGFGFVSY+    A+AAI QMNGFQIGSKRLKVQHKR
Sbjct:  199 PVQIRPAIGSNSTPTTPEQENKLFIGMTSRNADENAIREVFASFGEIREIYIIRNADGSNKGCAFLKYSQRDSALSAITMLNNKVVMDGASRPLIVKFADTKAQRRARGNGMSSRGLGSPGRGQSGHNPSSPYFIPPVPVYPNY-QAQRAPPIGIPHQYSQYPPQ---YGQSSSQN---------FMYVPT-GPYGYPSAPFNHNQMGNHSGGGSGAQQPGGAPSAFEPVPNPNHAVHPSRG----SPRTSPAPGK---VYQHRSDGPNTNTRPKEGPPGANLFIYHLPHDLTDADLATAFAPFGNVISAKVYVDKFTGESKGFGFVSYDVVTSADAAIEQMNGFQIGSKRLKVQHKR 535          
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: A0A836CBS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS7_9STRA)

HSP 1 Score: 242 bits (617), Expect = 5.110e-72
Identity = 159/335 (47.46%), Postives = 192/335 (57.31%), Query Frame = 1
Query:    1 NPLQVRPAEGQAEQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKRPSASRAQSMIGSPGRHGGNLHPDAPGWMSHPPGAAGYPY----AMQGPPMSS---SHVMGGIPAYNMPYAQGAAASGPXXXXQGSFLYYPYPTPGGYPPQGTYHSGPPSPNPRSIVGYGAGGHMHSPQGRDARHRQRPLYEGEDVGGGAISRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKR 984
            N LQVRPAEG  E++NKLFVGM PK+ANE+E+R VF+S+G LRE+H+IRN DG+NKGCAFVK+  R+ A+ AIDALHE+YT++G PRPLVVKFADN + +      M+  P   G +  P    + S P GA G       + QG PM S    +                     XX   G  + YP       PP G   S                     PQG         L           +RP EGP  +NLFIYHLP DL+DADLATAFA FG+V+SAKVY+DR + ESKGFGFVSY+    A AAI  MNGFQIG+KRLKVQHKR
Sbjct:  100 NALQVRPAEGHNERDNKLFVGMVPKAANEQELRKVFSSFGELREVHIIRNSDGSNKGCAFVKFMERECAVQAIDALHERYTLEGAPRPLVVKFADNNKRNV--VPRMLTGPIPGGTDSSP----YWSPPGGALGNLALAGGSQQGAPMYSYGGGYXXXXXXXXXXXXXXXXXXXXXXXGSSGQQMGYPP-----VPPAGP--SAXXXXXXXXXXXXXXXXXXXVPQGGGPSALVEELTP---------ARPQEGPAKSNLFIYHLPHDLTDADLATAFASFGNVISAKVYVDRVTNESKGFGFVSYDNPEAAAAAIVHMNGFQIGTKRLKVQHKR 412          
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: A0A448YXA3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXA3_9STRA)

HSP 1 Score: 242 bits (617), Expect = 1.150e-70
Identity = 161/347 (46.40%), Postives = 198/347 (57.06%), Query Frame = 1
Query:    4 PLQVRPAEGQAEQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKRP-------SASRAQSMIGSP-----GRHGGNLHPDAPGWMSHPPGAAGYPYAMQGPPMSSSHVMGGIPAYNMPYAQGAAASGPXXXXQGSFLYYPYPTPGGYPPQGTYHSGPPSPNP----RSIVGYGA-GGHMHS---PQGRDARHRQRPLYEGEDVGGGAISRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKR 984
            P QV+PAE    QENKLF+GM  + A E+E+R +FA +G +REI++IRN DGT+K  AF++Y  R +A++AI+ALH    M+G  RPL+VKFAD K         S  R +  IG P     G + G+  P  P  +  PP    Y   M  PP    H       Y  PY       GP    Q   +Y P     GYPP   Y    PSP+P        G G  GGH H    PQ      R  P +  +        RP EGP GANLF+YHLP DL+DADLATAF PFG+V+SAKVY+DR +G+SKGFGFVSY+    AE+AI QMNGFQIG+KRLKVQHKR
Sbjct:  255 PAQVKPAEPSV-QENKLFIGMLSRRAGEDEVRELFAPFGEIREIYMIRNGDGTSKCAAFLRYVGRDAAVNAIEALHNNLVMEGAARPLIVKFADTKHQRHVRQMRSVRRHEMFIGGPAGGYPGPYPGHHMPMGPPPVGGPPHQ--YAAHMGAPPHQMQH-------YGGPYP------GPGAGGQ---MYNPM----GYPPAPHY----PSPHPYGGFSERQGQGPDGGHQHQSTHPQRMKDGIRGNPRHHNQSTN----PRPREGPAGANLFVYHLPHDLTDADLATAFNPFGNVISAKVYVDRYTGDSKGFGFVSYDSVISAESAIEQMNGFQIGNKRLKVQHKR 570          
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: A0A662WJB0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJB0_9STRA)

HSP 1 Score: 238 bits (607), Expect = 2.750e-70
Identity = 174/397 (43.83%), Postives = 213/397 (53.65%), Query Frame = 1
Query:    1 NPLQVRPAEGQA--EQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQ-DGTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKRPSASRAQSMIGSPGRHGGNLHPDAPGWMSHPPGAAGYPYA----MQGPPMSSSHVMGGIPAYNM-PYAQG------AAASGPXXXXQGSFLYYPYPTPGGYPPQGTYHSGPPSPNPRSIVG---YGAGGHMHSPQGRDARHRQRPLYEGEDVGGGAISRPA---------EGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKRRGQNTEDPDDRAGD--GAGGFGETGDYYSHPDYLG----HHEA 1095
            NPLQVRPAEGQA   QE+KLF+GM PK+A+E  IR VF  +GT+ E++++R+   G +KGCAF+K+  R SAL AID ++   TM  G  PLVVKFAD++R    RA+++  +           A  +   PPGA G P+     +Q   M      G   A  M P A G      AAA+GP      SF+YY                     NP    G   YG  G      G D +        G D     +   A         EGP GANLFIYHLP DL+DADLATAFAPFG V+SAKVY+D+ +GESKGFGFVSY+ +  A+AAIA MNGFQIGSKRLKVQHKR  Q         GD  G GG G +G    H D L     HH+ 
Sbjct:  134 NPLQVRPAEGQAGASQEHKLFIGMIPKTADEAAIREVFELFGTIEEVYILRHPATGQSKGCAFLKFKDRNSALAAIDEVNGAVTMDRGTSPLVVKFADSRRQRLQRARNLAAAA----------ANTYWPMPPGA-GLPFPQLQQLQQQYMQQMQAFGAQTAAGMNPVAAGLSSPVGAAATGPGSPTN-SFMYY---------------------NPYGFAGAAPYGFNGLPSVGGGFDMQASLMGAAGGVDAQSQGVEAAAKASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFGFVSYDSADAADAAIASMNGFQIGSKRLKVQHKRIHQR--------GDYFGGGGVGSSGSLGGHEDELAGLEYHHQT 489          
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: A0A485KNC1_9STRA (Aste57867_9466 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNC1_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.910e-69
Identity = 155/336 (46.13%), Postives = 192/336 (57.14%), Query Frame = 1
Query:    1 NPLQVRPAEGQA--EQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQD-GTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKRPSASRAQSMIGSPGRHGGNLHPDAPGWMSHPPGAAGYPYA----MQGPPMSSSHVMGGIPAYNMPYAQGAAASGPXXXXQGSFLYY-PYPTPGGYPPQGTYHSGPPSPNPRSIVGYGAGGHMHSPQGRDARHRQRPLYEGEDVGGGAISRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKR 984
            NPLQVRPAEGQA   QE+KLF+GM PK A+E +IRAVF S+G + EI+++R+   G +KGCAF+KY  R +A  AID ++   TM  G  PLVVKFAD++R    RA++   +           A  +   PPGAA  P+     +Q   M      G   A   P + G     P      +F+YY PY  PG YP             P + VG+       +     A      L               EGP GANLFIYHLP DL+DADLATAFAPFG V+SAKVY+D+ +GESKGFGFVSY+ +  A+AAIA MNGFQIGSKRLKVQHKR
Sbjct:  105 NPLQVRPAEGQAGASQEHKLFIGMIPKHADEADIRAVFESHGEIEEIYILRHPGTGQSKGCAFLKYKDRHAASTAIDMINGVVTMDRGTAPLVVKFADSRRQRIQRARNQAAT----------SAAAYWQMPPGAA-IPFPQLQQIQQQYMQQMQAFGAQAAALNPSSNGVPPPAPANPA--AFMYYNPYGIPGAYPSF-----------PAAPVGFPLDPAAAAAASDSAARASSQL---------------EGPIGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKNTGESKGFGFVSYDSAQAADAAIASMNGFQIGSKRLKVQHKR 401          
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: A0A024FWI3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FWI3_9STRA)

HSP 1 Score: 236 bits (601), Expect = 3.060e-69
Identity = 164/372 (44.09%), Postives = 210/372 (56.45%), Query Frame = 1
Query:    1 NPLQVRPAEGQA--EQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQD-GTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKRPSASRAQSMIGSPGRHGGNLHPDAPGWMSHPPGAAGYPYAMQGPPMSSSHVMGGIPAYNMP---YAQGAAASGPXXXXQGSFLYY-PYPTPGGYPP--QGTYHSGPPSPNPRSIVGYGAGGHMHSPQGRDARHRQRPLYEGEDV----GGGAISRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKR--RGQNTEDPDDRAGDGAGGFGETGDYYSHP 1071
            NPLQVRPAEGQA   QE+KLF+GM PK+A E+ I  +F  +G + E+ ++R+Q  G +KGCAF+K+  R+SA+ AI+ L+ + TM  G  PLVVKFAD++R    R +S      + G    P  P    +     G    +        H M  + A+         G+   G       SF+YY PY   G  P    G+ +    +PNP      G  G      G DA      L  G D+    GG   +   EGPPGANLFIYHLP DL+DADLATAFAPFG V+SAKVY+D+ +GESKGFGFVSY+ S  A+ AIA MNGFQIGSKRLKVQHKR   GQ   +     GD   GF E+G+  ++P
Sbjct:  148 NPLQVRPAEGQAGAAQEHKLFIGMIPKTATEQAIYEIFGDFGPIDEVFILRHQPTGQSKGCAFLKFKERESAVAAIEQLNGKITMMNGVSPLVVKFADSRRQRLQRVRSTTSDTSQAGYWQMPHIPDGSIN-----GISLPVSQMQQMQQHYMQQVQAFGTQANGIGSGSVLPGSTSPTN-SFMYYNPYALSGAMPYGYNGSMYETMGAPNPAYSESIGHSGSSDVMTGADAAALTSSLA-GIDINANAGGTRSTTQLEGPPGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKLTGESKGFGFVSYDASEAADNAIASMNGFQIGSKRLKVQHKRIHSGQTQAN----YGDMNAGFAESGELSTYP 508          
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: D8LNL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL8_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 4.740e-69
Identity = 166/381 (43.57%), Postives = 203/381 (53.28%), Query Frame = 1
Query:    1 NPLQVRPAEGQ--------------AEQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKR---------PSASRAQSMIGSPGR-HGGNLHPDAPGWMSHPPGAA-----------------GYPYAMQGPPMSSSHVMGGIPAYNMPYAQGAAASGPXXXXQGSFLYYPYPTPGGYPPQGTYHSGPPSPNPRSIVGYGAGGHMH---SPQGRDA---------RHRQRPLYEGEDVGGGAISRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKR 984
            NP+QVRPA+ Q               ++ENKLFVGM P  A++  +  VF+ +G + EI+ +RN DGT KGCAFVK++TR +A+ AI+ALHE+ TM G  R LVVKFAD K+         P  +R  S +G  GR HGG          +  PG                   GYPY +  P    S   G  P Y  P+  G   +       G ++ Y    P  YP Q      P S         GAG   H   SP G                     GE  GG   +RP EGPPGANLFIYHLP DL+DADLATAFAPFGHV+SAKV++D+ + ESKGFGFVSYN  A AE AI++MNGFQIGSKRLKVQHK+
Sbjct:   43 NPVQVRPADSQMGDDRLGPNGRVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMDGATRALVVKFADVKKAQTAKGWMVPPDARGASPLGYNGRYHGGGTSVGGYWQATGAPGGRDVYSKGREVYPDYANHRGYPYQVGPPGGGYSQSYG--PEY--PHHPGQPQA-----RHGGYVAYSNLNPSHYPAQVDRSLSPSS---------GAGDRSHNFSSPPGGPVPGGIGXXXXXXXXXXXXRGEHGGG---ARPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTQESKGFGFVSYNHPAEAEVAISKMNGFQIGSKRLKVQHKK 402          
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: A0A0P1AE29_PLAHL (Cug-bp-and etr-3-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE29_PLAHL)

HSP 1 Score: 233 bits (595), Expect = 5.690e-69
Identity = 161/340 (47.35%), Postives = 194/340 (57.06%), Query Frame = 1
Query:    1 NPLQVRPAEGQA--EQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQD-GTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKRPSASRAQSMIGSPGRHGGNLHPDAPGWMSHPPGAA-GYPYA--MQGPPMSSSHVMGGIPAYNMPYAQ-----GAAASGPXXXXQGSFLYY-PYPTPGGYPPQGTYHSGPPSPNPRSIVGYGAGGHMHSPQGRDARHRQRPLYEGEDVGGGAISRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKR 984
            NPLQVRPAEGQA   QE+KLF+GM PK+A+E  IR VF  YGT+ E++++R+   G +KGCAF+K+  R SAL AID ++   TM  G  PLVVKFAD++R    RA++M  +           A  +   PPGA   +P    +Q   M      G     N   A      G A  GP      SFLYY PY    G  P G Y           +   GA    +  Q       Q    E   V     +   EGP GANLFIYHLP DL+DADLATAFAPFG V+SAKVY+D+ +GESKGFGFVSY+ S  A+AAIA MNGFQIGSKRLKVQHKR
Sbjct:  104 NPLQVRPAEGQAGASQEHKLFIGMIPKTADEGAIREVFELYGTIEEVYILRHPSTGLSKGCAFLKFKDRTSALAAIDDVNGNITMDRGTSPLVVKFADSRRQRLQRARNMAAA-----------ANAYWPLPPGAGLAFPQLQQLQQQYMQQMQAFGVQVGLNPAVAGLESPVGGAGGGPASPTN-SFLYYNPYGFAAG--PAGPYGF-------NGLPNVGAAISSYDMQSGGLVEMQGQAVEA--VKAARTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFGFVSYDSSEAADAAIASMNGFQIGSKRLKVQHKR 420          
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Match: A0A1E7FGE6_9STRA (RNA-binding domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGE6_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.540e-68
Identity = 157/353 (44.48%), Postives = 195/353 (55.24%), Query Frame = 1
Query:    4 PLQVRPAEGQAEQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKRPSASRAQSMIG--------SPGRHGGNLHPDAPGWMSHPPGAAGYPYAMQGPPMSSSHVMGGIP-AYNMPYAQGAAASGPXXXXQGSFLYYP-YPTPGGYPPQGTYHSGPPSPNPRSIVGYGAGGHMHSPQG-RDARHRQRPLYEGEDVGG---------------GAISRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYNQSAHAEAAIAQMNGFQIGSKRLKVQHKR 984
            P QV+PAE     ENKLFVGM  + A E+EIR +FA +G +REI++IRN DG++K  AF++Y  R SA+ AI+ LH    ++G  RPL+VKFADNK     R    +          PG     ++P     M+  PGA  + Y    PP    H MGG P A+++P   GA   G         +Y P YP+P        ++ GPP P       YGAGG     Q  R   H                             A  RP EGP GANLF+YHLP DL+DADLATAF PFG+V+SAKVY+DR + ESKGFGFVSY+    AE+AI QMNGFQIG+KRLKVQHKR
Sbjct:  158 PAQVKPAEPSVP-ENKLFVGMLSRKAGEDEIRELFAPFGEIREIYMIRNADGSSKCAAFLRYIDRDSAIQAIEMLHNNLVLEGAARPLIVKFADNKHQRQQRHMRNVRRQELMTVMGPGVGYPGIYPGHHMAMAPLPGAPSHQY----PP---HHQMGGPPHAHHLPQYHGAPYPGGPGGGGPPAMYNPMYPSP-------QHYGGPPHP-------YGAGGFQDPNQNNRQGSHXXXXXXXXXXXXXXXXXXXXXXXXXPNQAANPRPREGPAGANLFVYHLPHDLTDADLATAFNPFGNVISAKVYVDRYTDESKGFGFVSYDSVISAESAIEQMNGFQIGNKRLKVQHKR 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81451.15814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV60_ECTSI3.860e-15667.72Trinucleotide repeat containing 4, isoform CRA_d n... [more]
A0A7S1BYN5_9STRA5.630e-7846.37Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A836CBS7_9STRA5.110e-7247.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A448YXA3_9STRA1.150e-7046.40Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A662WJB0_9STRA2.750e-7043.83Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A485KNC1_9STRA1.910e-6946.13Aste57867_9466 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024FWI3_9STRA3.060e-6944.09Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
D8LNL8_ECTSI4.740e-6943.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0P1AE29_PLAHL5.690e-6947.35Cug-bp-and etr-3-like n=1 Tax=Plasmopara halstedii... [more]
A0A1E7FGE6_9STRA1.540e-6844.48RNA-binding domain-containing protein n=1 Tax=Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81451contigH-elongata_contig81451:770..2121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.5
Seed ortholog evalue3.8e-127
Seed eggNOG ortholog2880.D7FV60
Preferred nameCELF2
KEGG rclassRC00002,RC00017
KEGG koko:K00852,ko:K02177,ko:K13207
KEGG ReactionR01051,R02750
KEGG Pathwayko00030,ko04320,map00030,map04320
GOsGO:0000003,GO:0000166,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0000900,GO:0001889,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006928,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007010,GO:0007088,GO:0007096,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007319,GO:0007346,GO:0007368,GO:0007389,GO:0007568,GO:0008016,GO:0008150,GO:0008152,GO:0008219,GO:0008340,GO:0008380,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009626,GO:0009628,GO:0009648,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010228,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010927,GO:0012501,GO:0012505,GO:0014743,GO:0014881,GO:0016020,GO:0016043,GO:0016049,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016477,GO:0016604,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019827,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023056,GO:0030029,GO:0030036,GO:0030154,GO:0030239,GO:0030371,GO:0030718,GO:0031016,GO:0031032,GO:0031047,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031369,GO:0031536,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0034050,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034655,GO:0035194,GO:0035239,GO:0035295,GO:0035770,GO:0036002,GO:0036094,GO:0036099,GO:0036464,GO:0040007,GO:0040008,GO:0040011,GO:0040014,GO:0040018,GO:0040029,GO:0042692,GO:0042802,GO:0042803,GO:0042835,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044057,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045087,GO:0045182,GO:0045214,GO:0045495,GO:0045595,GO:0045597,GO:0045787,GO:0045840,GO:0045927,GO:0045931,GO:0045935,GO:0046011,GO:0046483,GO:0046700,GO:0046983,GO:0048024,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048546,GO:0048565,GO:0048568,GO:0048573,GO:0048580,GO:0048583,GO:0048584,GO:0048588,GO:0048589,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048870,GO:0050684,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0055001,GO:0055002,GO:0055123,GO:0060255,GO:0060293,GO:0061008,GO:0061013,GO:0061014,GO:0061031,GO:0061061,GO:0061113,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080151,GO:0090066,GO:0090068,GO:0090079,GO:0090257,GO:0090304,GO:0097159,GO:0097435,GO:0098727,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1903311,GO:1903313,GO:1903522,GO:1990402,GO:1990904,GO:2000026,GO:2000028,GO:2000031,GO:2000112,GO:2000113,GO:2000241,GO:2000736,GO:2000738,GO:2001023,GO:2001025,GO:2001038,GO:2001040
EggNOG free text desc.RNA binding
EggNOG OGsKOG0144@1,KOG0144@2759
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-12_007440.1
EC2.7.1.15
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size1101
Cds size1101
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.6297061-CDS-H-elongata_contig81451:769..16521622931222.6297061-CDS-H-elongata_contig81451:769..1652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81451 770..1652 +
1691679748.3169923-CDS-H-elongata_contig81451:769..16521691679748.3169923-CDS-H-elongata_contig81451:769..1652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81451 770..1652 +
1622931222.6455448-CDS-H-elongata_contig81451:1903..21211622931222.6455448-CDS-H-elongata_contig81451:1903..2121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81451 1904..2121 +
1691679748.3484335-CDS-H-elongata_contig81451:1903..21211691679748.3484335-CDS-H-elongata_contig81451:1903..2121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81451 1904..2121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81451.15814.1prot_H-elongata_contig81451.15814.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81451 770..2121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81451.15814.1

>prot_H-elongata_contig81451.15814.1 ID=prot_H-elongata_contig81451.15814.1|Name=mRNA_H-elongata_contig81451.15814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=367bp
NPLQVRPAEGQAEQENKLFVGMAPKSANEEEIRAVFASYGTLREIHVIRN
QDGTNKGCAFVKYTTRQSALDAIDALHEQYTMQGGPRPLVVKFADNKRPS
ASRAQSMIGSPGRHGGNLHPDAPGWMSHPPGAAGYPYAMQGPPMSSSHVM
GGIPAYNMPYAQGAAASGPPPPPQGSFLYYPYPTPGGYPPQGTYHSGPPS
PNPRSIVGYGAGGHMHSPQGRDARHRQRPLYEGEDVGGGAISRPAEGPPG
ANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYN
QSAHAEAAIAQMNGFQIGSKRLKVQHKRRGQNTEDPDDRAGDGAGGFGET
GDYYSHPDYLGHHEAR*
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mRNA from alignment at H-elongata_contig81451:770..2121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81451.15814.1 ID=mRNA_H-elongata_contig81451.15814.1|Name=mRNA_H-elongata_contig81451.15814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1352bp|location=Sequence derived from alignment at H-elongata_contig81451:770..2121+ (Himanthalia elongata Himel1 dioecious)
AATCCGCTGCAGGTAAGGCCAGCTGAAGGCCAGGCTGAGCAAGAGAACAA ACTCTTCGTTGGCATGGCACCCAAGTCAGCGAACGAAGAGGAGATTCGCG CCGTGTTTGCGTCGTATGGAACGCTCCGAGAGATTCACGTCATCCGAAAC CAGGATGGAACTAACAAGGGCTGCGCTTTCGTCAAGTACACTACTCGCCA AAGTGCTCTGGATGCCATCGATGCTCTTCACGAGCAGTACACCATGCAGG GTGGACCGCGTCCGCTCGTAGTCAAGTTTGCCGACAACAAGCGGCCTTCC GCGTCCCGGGCCCAAAGTATGATAGGATCACCCGGTCGGCACGGTGGTAA CCTCCACCCAGATGCCCCAGGTTGGATGAGTCACCCTCCCGGAGCTGCAG GGTACCCTTACGCCATGCAAGGGCCACCGATGTCATCCTCGCATGTAATG GGGGGTATTCCGGCGTACAACATGCCCTACGCACAAGGGGCGGCAGCGTC CGGTCCTCCACCCCCGCCTCAGGGCAGCTTCCTTTATTATCCATACCCAA CCCCGGGGGGCTATCCTCCACAGGGGACCTACCACTCTGGTCCGCCCAGC CCGAACCCAAGATCTATTGTTGGCTATGGGGCGGGGGGGCACATGCACTC TCCACAGGGAAGAGATGCTCGTCACCGGCAGCGTCCTCTATATGAAGGAG AGGATGTCGGGGGTGGGGCCATCTCTCGCCCCGCAGAAGGCCCTCCTGGA GCGAACCTGTTTATCTACCACTTGCCTCAAGACCTTTCTGACGCAGACTT GGCCACCGCATTCGCGCCATTCGGGCACGTGTTGAGTGCCAAGGTGTACA TCGACAGGGCTTCGGGAGAAAGCAAGGGCTTTGGTAAGCACCACATTGAG TTTGAGAGCGACAAAAGTTCCGCCGGCTCGAGGGATTTGTTGAAGGTTGC ACAAAGCATAAATAAATGGAACACAACGCGACCTGGAAGGTCGTGACACC GTCAATGTCCTCCTTGTCTTACTGTCCAGTATAGGAGCACCGATCATACT CACATATTATGCCCTCATTTTCGCAGTGTGACCCCCCTATGCCCATTGTC CGTTTGCCGTCTTGGGAACTGTAATCTTGAACAGGGTTTGTTTCCTACAA CCAGTCGGCGCACGCAGAGGCTGCAATCGCGCAGATGAATGGTTTCCAGA TCGGATCGAAGCGTCTCAAAGTACAACACAAGCGTCGCGGGCAAAATACC GAAGACCCAGACGACCGTGCCGGCGACGGAGCGGGCGGGTTCGGGGAAAC AGGGGATTATTACTCCCACCCAGACTATTTAGGACACCACGAGGCCAGGT AA
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Coding sequence (CDS) from alignment at H-elongata_contig81451:770..2121+

>mRNA_H-elongata_contig81451.15814.1 ID=mRNA_H-elongata_contig81451.15814.1|Name=mRNA_H-elongata_contig81451.15814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2202bp|location=Sequence derived from alignment at H-elongata_contig81451:770..2121+ (Himanthalia elongata Himel1 dioecious)
AATCCGCTGCAGGTAAGGCCAGCTGAAGGCCAGGCTGAGCAAGAGAACAA
ACTCTTCGTTGGCATGGCACCCAAGTCAGCGAACGAAGAGGAGATTCGCG
CCGTGTTTGCGTCGTATGGAACGCTCCGAGAGATTCACGTCATCCGAAAC
CAGGATGGAACTAACAAGGGCTGCGCTTTCGTCAAGTACACTACTCGCCA
AAGTGCTCTGGATGCCATCGATGCTCTTCACGAGCAGTACACCATGCAGG
GTGGACCGCGTCCGCTCGTAGTCAAGTTTGCCGACAACAAGCGGCCTTCC
GCGTCCCGGGCCCAAAGTATGATAGGATCACCCGGTCGGCACGGTGGTAA
CCTCCACCCAGATGCCCCAGGTTGGATGAGTCACCCTCCCGGAGCTGCAG
GGTACCCTTACGCCATGCAAGGGCCACCGATGTCATCCTCGCATGTAATG
GGGGGTATTCCGGCGTACAACATGCCCTACGCACAAGGGGCGGCAGCGTC
CGGTCCTCCACCCCCGCCTCAGGGCAGCTTCCTTTATTATCCATACCCAA
CCCCGGGGGGCTATCCTCCACAGGGGACCTACCACTCTGGTCCGCCCAGC
CCGAACCCAAGATCTATTGTTGGCTATGGGGCGGGGGGGCACATGCACTC
TCCACAGGGAAGAGATGCTCGTCACCGGCAGCGTCCTCTATATGAAGGAG
AGGATGTCGGGGGTGGGGCCATCTCTCGCCCCGCAGAAGGCCCTCCTGGA
GCGAACCTGTTTATCTACCACTTGCCTCAAGACCTTTCTGACGCAGACTT
GGCCACCGCATTCGCGCCATTCGGGCACGTGTTGAGTGCCAAGGTGTACA
TCGACAGGGCTTCGGGAGAAAGCAAGGGCTTTGAATCCGCTGCAGGTAAG
GCCAGCTGAAGGCCAGGCTGAGCAAGAGAACAAACTCTTCGTTGGCATGG
CACCCAAGTCAGCGAACGAAGAGGAGATTCGCGCCGTGTTTGCGTCGTAT
GGAACGCTCCGAGAGATTCACGTCATCCGAAACCAGGATGGAACTAACAA
GGGCTGCGCTTTCGTCAAGTACACTACTCGCCAAAGTGCTCTGGATGCCA
TCGATGCTCTTCACGAGCAGTACACCATGCAGGGTGGACCGCGTCCGCTC
GTAGTCAAGTTTGCCGACAACAAGCGGCCTTCCGCGTCCCGGGCCCAAAG
TATGATAGGATCACCCGGTCGGCACGGTGGTAACCTCCACCCAGATGCCC
CAGGTTGGATGAGTCACCCTCCCGGAGCTGCAGGGTACCCTTACGCCATG
CAAGGGCCACCGATGTCATCCTCGCATGTAATGGGGGGTATTCCGGCGTA
CAACATGCCCTACGCACAAGGGGCGGCAGCGTCCGGTCCTCCACCCCCGC
CTCAGGGCAGCTTCCTTTATTATCCATACCCAACCCCGGGGGGCTATCCT
CCACAGGGGACCTACCACTCTGGTCCGCCCAGCCCGAACCCAAGATCTAT
TGTTGGCTATGGGGCGGGGGGGCACATGCACTCTCCACAGGGAAGAGATG
CTCGTCACCGGCAGCGTCCTCTATATGAAGGAGAGGATGTCGGGGGTGGG
GCCATCTCTCGCCCCGCAGAAGGCCCTCCTGGAGCGAACCTGTTTATCTA
CCACTTGCCTCAAGACCTTTCTGACGCAGACTTGGCCACCGCATTCGCGC
CATTCGGGCACGTGTTGAGTGCCAAGGTGTACATCGACAGGGCTTCGGGA
GAAAGCAAGGGCTTTGGGTTTGTTTCCTACAACCAGTCGGCGCACGCAGA
GGCTGCAATCGCGCAGATGAATGGTTTCCAGATCGGATCGAAGCGTCTCA
AAGTACAACACAAGCGTCGCGGGCAAAATACCGAAGACCCAGACGACCGT
GCCGGCGACGGAGCGGGCGGGTTCGGGGAAACAGGGGATTATTACTCCCA
CCCAGACTATTTAGGACACCACGAGGCCAGGTAAGGTTTGTTTCCTACAA
CCAGTCGGCGCACGCAGAGGCTGCAATCGCGCAGATGAATGGTTTCCAGA
TCGGATCGAAGCGTCTCAAAGTACAACACAAGCGTCGCGGGCAAAATACC
GAAGACCCAGACGACCGTGCCGGCGACGGAGCGGGCGGGTTCGGGGAAAC
AGGGGATTATTACTCCCACCCAGACTATTTAGGACACCACGAGGCCAGGT
AA
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