mRNA_H-elongata_contig81419.15806.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 167 bits (422), Expect = 4.710e-44 Identity = 108/283 (38.16%), Postives = 161/283 (56.89%), Query Frame = 1
Query: 1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
T+NVRT++ G N GH ++ + CD I +Q+TR G+ +I A D Y++ SG G K + GVG+A++E++ ++G +G E IS ++KV + TF+VGYAPTET T K FW L + + EV + DHL+++MDANAR G + +G D ++ Y RD + +NG +LL A++++LS+ NT+F T K GG F K ++RLD+I +RQ DRR V N++V SDH+LV ++RL R APNR
Sbjct: 179 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRLPPRVAPNR 454
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 167 bits (422), Expect = 4.030e-43 Identity = 108/282 (38.30%), Postives = 157/282 (55.67%), Query Frame = 1
Query: 1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAADYIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
T+NVRT++ G N GH ++ A +CD I +Q+TR G+ I Y++ SG G K + GVG+A++E++ ++G G E IS ++KV + TF+VGYAPTETA K FW L + + EV + DHL+++MDANAR G + +G D ++ Y RD + +NG +LL AA+++LS++NT+F T K G + K+ H RLD+IL+RQ DRRLV N +V SDH LV ++R R APNR
Sbjct: 94 TFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAI--THDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKH--RLDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNR 369
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 161 bits (408), Expect = 6.870e-43 Identity = 106/283 (37.46%), Postives = 158/283 (55.83%), Query Frame = 1
Query: 1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
T+NVRT++ G N GH ++ + CD I +Q+TR G+ +I A D Y++ SG G K + GVG+ ++E++ ++G +G E I ++KV + F+VGYAPTET T K FW L + + EV + DHL+++MDANAR G + +G D ++ Y RD + +NG +LL A++++LS+ NT+F T K GG F K ++RLD+IL+RQ DRR V N++V SDH LV ++RL R APNR
Sbjct: 85 TFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 360
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 163 bits (412), Expect = 8.380e-42 Identity = 107/283 (37.81%), Postives = 160/283 (56.54%), Query Frame = 1
Query: 1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
T+NV T++ G N GH ++ + CD I +Q+TR +G+ +I A D Y++ SG G K + GVG+A++E++ ++G +G E IS ++KV + TF+V YAPTET T K FW L + + EV + DHL+++MDANAR G + +G D ++ Y RD + +NG +LL A++++LS+ NT+F T K GG F K ++RLD+IL+RQ DRR V N++V SDH LV ++RL R APNR
Sbjct: 661 TFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 936
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 161 bits (408), Expect = 2.480e-41 Identity = 107/283 (37.81%), Postives = 159/283 (56.18%), Query Frame = 1
Query: 1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
T++VRT+ G N GH ++ ++ CD I +Q+TR +G+ +I A D Y++ SG G K GVG+A++E++ +G +G E IS ++KV + TF+VGYAPTET K FW L + + EV + DHL+++MDANAR G + +G D ++ Y RD + +NG +LL A++++LS+ NT+F T K GG F K ++RLD+IL+RQ DRR V N++V SDH LV ++RL R APNR
Sbjct: 159 TFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQCSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLRPRVAPNR 434
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 153 bits (387), Expect = 6.970e-41 Identity = 101/262 (38.55%), Postives = 148/262 (56.49%), Query Frame = 1
Query: 61 LLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
++ + CD I +Q+TR +G+ +I A D Y++ SG G K + GVG+A++E++ ++G +G E IS ++KV + TF+VGYAPTET T K FW L + + EV + DHL+++MDANAR G + GG D VL Y RD + +NG +L A++++ S+ NT+F T K GG F K ++RLD+IL+RQ DRR V N++V SDH LV ++RL R APNR
Sbjct: 3 VMQICSATGCDVIGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR-RGGCC-DAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.890e-40 Identity = 105/283 (37.10%), Postives = 157/283 (55.48%), Query Frame = 1
Query: 1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVH--PKMKSDHRLVSASIRLLGRNAPNR 819
T+NVRT++ G N GH ++ + CD I +Q+TR G+ +I A D Y++ SG G K + GVG+A++E++ ++G +G E IS ++KV + TF+VGYAPTET T K FW L + + EV + DHL+++MDANAR G + +G D ++ Y RD + +NG +LL A++++LS+ NT+ T K GG F K ++RLD IL+RQ DRR V N++V DH LV ++R R AP+R
Sbjct: 90 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPK-GGVQHTFQSSN-KGKEKYRLDLILMRQTDRRFVRNVSVKCVDFKDPDHNLVLTTVRRPPRVAPHR 365
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 152 bits (384), Expect = 2.690e-40 Identity = 99/262 (37.79%), Postives = 147/262 (56.11%), Query Frame = 1
Query: 61 LLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
++ + CD I +Q+TR +G+ + LA D Y++ SG G K + GVG+A++E++ ++G G E I+ ++KV + TF+VGYAPTET T K FW L + EV + DHL+++MDANAR G + +G D ++ Y RD + +NG +LL A+ ++LS+ NT+F T K GG F K ++RLD+IL+RQ DRR V N++V SDH LV ++RL R APNR
Sbjct: 3 VMQLCSATGCDVIGLQETRREGQGS---LAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 157 bits (396), Expect = 9.930e-40 Identity = 100/262 (38.17%), Postives = 150/262 (57.25%), Query Frame = 1
Query: 61 LLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
++ + CD I +Q+TR +G+ +I A D Y++ SG G K + GVG+A++E++ ++G +G E IS ++KV + TF+VGYAPTET T K FW L + + EV + DHL+++MDANAR G + +G D ++ Y RD + +NG +LL A++++LS+ NT+F T K GG F K ++RLD+IL+RQ DRR V N++V SDH LV ++RL R APNR
Sbjct: 3 VMQICSATGCDVIGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 152 bits (383), Expect = 3.470e-39 Identity = 97/262 (37.02%), Postives = 149/262 (56.87%), Query Frame = 1
Query: 61 LLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
++ + CD +Q+TR +G+ +I A D Y++ SG G K + GVG+A++E++ ++G +G E IS ++KV + TF++GYAPTET T K FW L + + EV + DHL+++MDANAR G + +G D ++ Y RD + +NG +LL A++++LS+ NT+F T K GG F K ++RLD+IL+RQ DRR V +++V SDH LV ++RL R APNR
Sbjct: 3 VMQICSATGCDVTGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGAQHTFQSSNTGKE-KYRLDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig81419.15806.1 >prot_H-elongata_contig81419.15806.1 ID=prot_H-elongata_contig81419.15806.1|Name=mRNA_H-elongata_contig81419.15806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp MSERGTNGPGHAEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAADYIVHback to top mRNA from alignment at H-elongata_contig81419:11..835+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig81419.15806.1 ID=mRNA_H-elongata_contig81419.15806.1|Name=mRNA_H-elongata_contig81419.15806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=825bp|location=Sequence derived from alignment at H-elongata_contig81419:11..835+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig81419:11..835+ >mRNA_H-elongata_contig81419.15806.1 ID=mRNA_H-elongata_contig81419.15806.1|Name=mRNA_H-elongata_contig81419.15806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig81419:11..835+ (Himanthalia elongata Himel1 dioecious)back to top |