mRNA_H-elongata_contig81419.15806.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81419.15806.1
Unique NamemRNA_H-elongata_contig81419.15806.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.710e-44
Identity = 108/283 (38.16%), Postives = 161/283 (56.89%), Query Frame = 1
Query:    1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
            T+NVRT++  G N  GH    ++   +   CD I +Q+TR  G+ +I   A D Y++  SG   G   K  + GVG+A++E++  ++G +G   E IS  ++KV +        TF+VGYAPTET  T        K  FW  L + + EV + DHL+++MDANAR G + +G    D  ++  Y RD + +NG +LL  A++++LS+ NT+F T K GG    F     K   ++RLD+I +RQ DRR V N++V       SDH+LV  ++RL  R APNR
Sbjct:  179 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRLPPRVAPNR 454          
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.030e-43
Identity = 108/282 (38.30%), Postives = 157/282 (55.67%), Query Frame = 1
Query:    1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAADYIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
            T+NVRT++  G N  GH    ++   A  +CD I +Q+TR  G+  I      Y++  SG   G   K  + GVG+A++E++  ++G  G   E IS  ++KV +        TF+VGYAPTETA          K  FW  L + + EV + DHL+++MDANAR G + +G    D  ++  Y RD + +NG +LL  AA+++LS++NT+F T K G      +    K+ H  RLD+IL+RQ DRRLV N +V       SDH LV  ++R   R APNR
Sbjct:   94 TFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAI--THDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKH--RLDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNR 369          
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 6.870e-43
Identity = 106/283 (37.46%), Postives = 158/283 (55.83%), Query Frame = 1
Query:    1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
            T+NVRT++  G N  GH    ++   +   CD I +Q+TR  G+ +I   A D Y++  SG   G   K  + GVG+ ++E++  ++G +G   E I   ++KV +         F+VGYAPTET  T        K  FW  L + + EV + DHL+++MDANAR G + +G    D  ++  Y RD + +NG +LL  A++++LS+ NT+F T K GG    F     K   ++RLD+IL+RQ DRR V N++V       SDH LV  ++RL  R APNR
Sbjct:   85 TFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 360          
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 8.380e-42
Identity = 107/283 (37.81%), Postives = 160/283 (56.54%), Query Frame = 1
Query:    1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
            T+NV T++  G N  GH    ++   +   CD I +Q+TR +G+ +I   A D Y++  SG   G   K  + GVG+A++E++  ++G +G   E IS  ++KV +        TF+V YAPTET  T        K  FW  L + + EV + DHL+++MDANAR G + +G    D  ++  Y RD + +NG +LL  A++++LS+ NT+F T K GG    F     K   ++RLD+IL+RQ DRR V N++V       SDH LV  ++RL  R APNR
Sbjct:  661 TFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 936          
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.480e-41
Identity = 107/283 (37.81%), Postives = 159/283 (56.18%), Query Frame = 1
Query:    1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
            T++VRT+   G N  GH    ++  ++   CD I +Q+TR +G+ +I   A D Y++  SG   G   K    GVG+A++E++   +G +G   E IS  ++KV +        TF+VGYAPTET           K  FW  L + + EV + DHL+++MDANAR G + +G    D  ++  Y RD + +NG +LL  A++++LS+ NT+F T K GG    F     K   ++RLD+IL+RQ DRR V N++V       SDH LV  ++RL  R APNR
Sbjct:  159 TFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQCSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLRPRVAPNR 434          
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 6.970e-41
Identity = 101/262 (38.55%), Postives = 148/262 (56.49%), Query Frame = 1
Query:   61 LLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
            ++   +   CD I +Q+TR +G+ +I   A D Y++  SG   G   K  + GVG+A++E++  ++G +G   E IS  ++KV +        TF+VGYAPTET  T        K  FW  L + + EV + DHL+++MDANAR G +  GG   D  VL  Y RD + +NG +L   A++++ S+ NT+F T K GG    F     K   ++RLD+IL+RQ DRR V N++V       SDH LV  ++RL  R APNR
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR-RGGCC-DAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257          
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.890e-40
Identity = 105/283 (37.10%), Postives = 157/283 (55.48%), Query Frame = 1
Query:    1 TWNVRTMSERGTNGPGH-AEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVH--PKMKSDHRLVSASIRLLGRNAPNR 819
            T+NVRT++  G N  GH    ++   +   CD I +Q+TR  G+ +I   A D Y++  SG   G   K  + GVG+A++E++  ++G +G   E IS  ++KV +        TF+VGYAPTET  T        K  FW  L + + EV + DHL+++MDANAR G + +G    D  ++  Y RD + +NG +LL  A++++LS+ NT+  T K GG    F     K   ++RLD IL+RQ DRR V N++V        DH LV  ++R   R AP+R
Sbjct:   90 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPK-GGVQHTFQSSN-KGKEKYRLDLILMRQTDRRFVRNVSVKCVDFKDPDHNLVLTTVRRPPRVAPHR 365          
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.690e-40
Identity = 99/262 (37.79%), Postives = 147/262 (56.11%), Query Frame = 1
Query:   61 LLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
            ++   +   CD I +Q+TR +G+ +   LA D Y++  SG   G   K  + GVG+A++E++  ++G  G   E I+  ++KV +        TF+VGYAPTET  T        K  FW  L   + EV + DHL+++MDANAR G + +G    D  ++  Y RD + +NG +LL  A+ ++LS+ NT+F T K GG    F     K   ++RLD+IL+RQ DRR V N++V       SDH LV  ++RL  R APNR
Sbjct:    3 VMQLCSATGCDVIGLQETRREGQGS---LAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257          
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 9.930e-40
Identity = 100/262 (38.17%), Postives = 150/262 (57.25%), Query Frame = 1
Query:   61 LLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
            ++   +   CD I +Q+TR +G+ +I   A D Y++  SG   G   K  + GVG+A++E++  ++G +G   E IS  ++KV +        TF+VGYAPTET  T        K  FW  L + + EV + DHL+++MDANAR G + +G    D  ++  Y RD + +NG +LL  A++++LS+ NT+F T K GG    F     K   ++RLD+IL+RQ DRR V N++V       SDH LV  ++RL  R APNR
Sbjct:    3 VMQICSATGCDVIGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257          
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.470e-39
Identity = 97/262 (37.02%), Postives = 149/262 (56.87%), Query Frame = 1
Query:   61 LLMFAAKYECDFIAIQKTRCDGRTTIQALAAD-YIVHCSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIFKHRAVTTFIVGYAPTETAATCH------KSKFWKKLRSTVAEVPASDHLILMMDANARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFSTSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPK--MKSDHRLVSASIRLLGRNAPNR 819
            ++   +   CD   +Q+TR +G+ +I   A D Y++  SG   G   K  + GVG+A++E++  ++G +G   E IS  ++KV +        TF++GYAPTET  T        K  FW  L + + EV + DHL+++MDANAR G + +G    D  ++  Y RD + +NG +LL  A++++LS+ NT+F T K GG    F      K  ++RLD+IL+RQ DRR V +++V       SDH LV  ++RL  R APNR
Sbjct:    3 VMQICSATGCDVTGLQETRREGQGSI---AHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGAQHTFQSSNTGKE-KYRLDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81419.15806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3Q1_9PHAE4.710e-4438.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQH5_9PHAE4.030e-4338.30Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KV75_9PHAE6.870e-4337.46Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K1H7_9PHAE8.380e-4237.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN7_9PHAE2.480e-4137.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBZ6_9PHAE6.970e-4138.55Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JMB4_9PHAE1.890e-4037.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K259_9PHAE2.690e-4037.79Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L7A7_9PHAE9.930e-4038.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSV0_9PHAE3.470e-3937.02Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81419contigH-elongata_contig81419:11..835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score92.4
Seed ortholog evalue3.4e-16
Seed eggNOG ortholog6500.XP_005107471.1
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BKMM@33208,3D1CS@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size825
Cds size807
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.9978046-UTR-H-elongata_contig81419:10..281622931221.9978046-UTR-H-elongata_contig81419:10..28Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81419 11..28 +
1691679747.960013-UTR-H-elongata_contig81419:10..281691679747.960013-UTR-H-elongata_contig81419:10..28Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81419 11..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.0098076-CDS-H-elongata_contig81419:28..8351622931222.0098076-CDS-H-elongata_contig81419:28..835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81419 29..835 +
1691679747.9725535-CDS-H-elongata_contig81419:28..8351691679747.9725535-CDS-H-elongata_contig81419:28..835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81419 29..835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81419.15806.1prot_H-elongata_contig81419.15806.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81419 29..835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81419.15806.1

>prot_H-elongata_contig81419.15806.1 ID=prot_H-elongata_contig81419.15806.1|Name=mRNA_H-elongata_contig81419.15806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
MSERGTNGPGHAEDLLMFAAKYECDFIAIQKTRCDGRTTIQALAADYIVH
CSGHCDGDGGKPWILGVGLAVRESIARALGPDGIVPEHISAWVLKVSVIF
KHRAVTTFIVGYAPTETAATCHKSKFWKKLRSTVAEVPASDHLILMMDAN
ARAGGKGEGGRQGDFWVLRPYDRDTLIDNGSQLLACAAEHKLSVVNTFFS
TSKRGGNSDAFTYEGPKKSHRWRLDYILVRQYDRRLVWNITVHPKMKSDH
RLVSASIRLLGRNAPNRP*
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mRNA from alignment at H-elongata_contig81419:11..835+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81419.15806.1 ID=mRNA_H-elongata_contig81419.15806.1|Name=mRNA_H-elongata_contig81419.15806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=825bp|location=Sequence derived from alignment at H-elongata_contig81419:11..835+ (Himanthalia elongata Himel1 dioecious)
ACATGGAACGTCCGTACCATGTCCGAGAGAGGGACCAACGGCCCGGGGCA CGCGGAGGATCTTTTGATGTTCGCTGCGAAATACGAGTGCGACTTCATCG CCATACAGAAGACTCGCTGCGATGGAAGGACAACCATCCAAGCATTAGCC GCTGATTATATCGTGCACTGCAGTGGTCATTGCGATGGTGATGGAGGTAA GCCCTGGATACTCGGAGTTGGTCTGGCTGTCAGGGAGTCTATCGCTCGCG CACTCGGCCCAGATGGCATTGTGCCGGAACACATCAGTGCGTGGGTGCTG AAGGTAAGCGTGATTTTCAAACACAGAGCCGTCACAACCTTCATCGTGGG ATACGCTCCAACTGAAACAGCAGCGACCTGTCACAAGTCTAAGTTCTGGA AGAAACTTCGCAGCACTGTCGCTGAGGTACCTGCAAGCGACCACCTGATT TTGATGATGGATGCCAACGCCCGTGCGGGAGGAAAGGGAGAGGGAGGTAG ACAAGGGGATTTCTGGGTTTTGAGACCATACGACAGAGACACCCTCATTG ACAATGGGTCTCAACTTCTAGCATGTGCTGCTGAGCACAAGCTGTCGGTT GTCAACACCTTTTTCAGCACGTCGAAGCGTGGGGGAAACTCGGATGCATT CACATACGAGGGGCCGAAGAAATCCCATCGCTGGCGCTTGGACTACATCC TGGTACGCCAGTATGACCGCAGGCTCGTCTGGAATATTACTGTCCACCCG AAGATGAAATCAGACCACCGCTTGGTTTCAGCTTCCATCCGCCTCCTAGG ACGGAACGCACCAAACCGTCCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig81419:11..835+

>mRNA_H-elongata_contig81419.15806.1 ID=mRNA_H-elongata_contig81419.15806.1|Name=mRNA_H-elongata_contig81419.15806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig81419:11..835+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGAGAGAGGGACCAACGGCCCGGGGCACGCGGAGGATCTTTTGAT
GTTCGCTGCGAAATACGAGTGCGACTTCATCGCCATACAGAAGACTCGCT
GCGATGGAAGGACAACCATCCAAGCATTAGCCGCTGATTATATCGTGCAC
TGCAGTGGTCATTGCGATGGTGATGGAGGTAAGCCCTGGATACTCGGAGT
TGGTCTGGCTGTCAGGGAGTCTATCGCTCGCGCACTCGGCCCAGATGGCA
TTGTGCCGGAACACATCAGTGCGTGGGTGCTGAAGGTAAGCGTGATTTTC
AAACACAGAGCCGTCACAACCTTCATCGTGGGATACGCTCCAACTGAAAC
AGCAGCGACCTGTCACAAGTCTAAGTTCTGGAAGAAACTTCGCAGCACTG
TCGCTGAGGTACCTGCAAGCGACCACCTGATTTTGATGATGGATGCCAAC
GCCCGTGCGGGAGGAAAGGGAGAGGGAGGTAGACAAGGGGATTTCTGGGT
TTTGAGACCATACGACAGAGACACCCTCATTGACAATGGGTCTCAACTTC
TAGCATGTGCTGCTGAGCACAAGCTGTCGGTTGTCAACACCTTTTTCAGC
ACGTCGAAGCGTGGGGGAAACTCGGATGCATTCACATACGAGGGGCCGAA
GAAATCCCATCGCTGGCGCTTGGACTACATCCTGGTACGCCAGTATGACC
GCAGGCTCGTCTGGAATATTACTGTCCACCCGAAGATGAAATCAGACCAC
CGCTTGGTTTCAGCTTCCATCCGCCTCCTAGGACGGAACGCACCAAACCG
TCCCTAAATGTCCGAGAGAGGGACCAACGGCCCGGGGCACGCGGAGGATC
TTTTGATGTTCGCTGCGAAATACGAGTGCGACTTCATCGCCATACAGAAG
ACTCGCTGCGATGGAAGGACAACCATCCAAGCATTAGCCGCTGATTATAT
CGTGCACTGCAGTGGTCATTGCGATGGTGATGGAGGTAAGCCCTGGATAC
TCGGAGTTGGTCTGGCTGTCAGGGAGTCTATCGCTCGCGCACTCGGCCCA
GATGGCATTGTGCCGGAACACATCAGTGCGTGGGTGCTGAAGGTAAGCGT
GATTTTCAAACACAGAGCCGTCACAACCTTCATCGTGGGATACGCTCCAA
CTGAAACAGCAGCGACCTGTCACAAGTCTAAGTTCTGGAAGAAACTTCGC
AGCACTGTCGCTGAGGTACCTGCAAGCGACCACCTGATTTTGATGATGGA
TGCCAACGCCCGTGCGGGAGGAAAGGGAGAGGGAGGTAGACAAGGGGATT
TCTGGGTTTTGAGACCATACGACAGAGACACCCTCATTGACAATGGGTCT
CAACTTCTAGCATGTGCTGCTGAGCACAAGCTGTCGGTTGTCAACACCTT
TTTCAGCACGTCGAAGCGTGGGGGAAACTCGGATGCATTCACATACGAGG
GGCCGAAGAAATCCCATCGCTGGCGCTTGGACTACATCCTGGTACGCCAG
TATGACCGCAGGCTCGTCTGGAATATTACTGTCCACCCGAAGATGAAATC
AGACCACCGCTTGGTTTCAGCTTCCATCCGCCTCCTAGGACGGAACGCAC
CAAACCGTCCCTAA
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